Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 20 de 33
Filter
Add more filters

Publication year range
1.
PLoS Pathog ; 19(3): e1011272, 2023 03.
Article in English | MEDLINE | ID: mdl-36972308

ABSTRACT

The signaling pathways and networks regulating expression of chondroitin sulfate proteoglycan 4 (CSPG4), a cancer-related protein that serves as a receptor for Clostridiodes difficile TcdB, are poorly defined. In this study, TcdB-resistant/CSPG4-negative HeLa cells were generated by exposure to increasing concentrations of the toxin. The cells that emerged (HeLa R5) lost expression of CSPG4 mRNA and were resistant to binding by TcdB. mRNA expression profiles paired with integrated pathway analysis correlated changes in the Hippo and estrogen signaling pathways with a CSPG4 decrease in HeLa R5 cells. Both signaling pathways altered CSPG4 expression when modulated chemically or through CRISPR-mediated deletion of key transcriptional regulators in the Hippo pathway. Based on the in vitro findings, we predicted and experimentally confirmed that a Hippo pathway inactivating drug (XMU-MP-1) provides protection from C. difficile disease in a mouse model. These results provide insights into key regulators of CSPG4 expression and identify a therapeutic for C. difficile disease.


Subject(s)
Bacterial Toxins , Clostridioides difficile , Humans , Animals , Mice , Clostridioides difficile/genetics , Hippo Signaling Pathway , Bacterial Toxins/metabolism , HeLa Cells , Clostridioides , RNA, Messenger/metabolism , Membrane Proteins/metabolism , Chondroitin Sulfate Proteoglycans/metabolism
2.
Microbiol Spectr ; 11(1): e0358222, 2023 02 14.
Article in English | MEDLINE | ID: mdl-36475924

ABSTRACT

There is growing evidence that shows Clostridium (Clostridioides) difficile is a pathogen of One Health importance with a complex dissemination pathway involving animals, humans, and the environment. Thus, environmental discharge and agricultural recycling of human and animal waste have been suspected as factors behind the dissemination of Clostridium difficile in the community. Here, the presence of C. difficile in 12 wastewater treatment plants (WWTPs) in Western Australia was investigated. Overall, C. difficile was found in 90.5% (114/126) of raw sewage influent, 48.1% (50/104) of treated effluent, 40% (2/5) of reclaimed irrigation water, 100% (38/38) of untreated biosolids, 95.2% (20/21) of anaerobically digested biosolids, and 72.7% (8/11) of lime-amended biosolids. Over half of the isolates (55.3% [157/284]) were toxigenic, and 97 C. difficile ribotypes (RTs) were identified, with RT014/020 the most common (14.8% [42/284]). Thirteen C. difficile isolates with the toxin gene profile A+ B+ CDT+ (positive for genes coding for toxins A and B and the binary C. difficile transferase toxin [CDT]) were found, including the hypervirulent RT078 strain. Resistance to the antimicrobials fidaxomicin, vancomycin, metronidazole, rifaximin, amoxicillin-clavulanate, meropenem, and moxifloxacin was uncommon; however, resistance to clindamycin, erythromycin, and tetracycline was relatively frequent at 56.7% (161/284), 14.4% (41/284), and 13.7% (39/284), respectively. This study revealed that toxigenic C. difficile was commonly encountered in WWTPs and being released into the environment. This raises concern about the possible spillover of C. difficile into animal and/or human populations via land receiving the treated waste. In Western Australia, stringent measures are in place to mitigate the health and environmental risk of recycling human waste; however, further studies are needed to elucidate the public health significance of C. difficile surviving the treatment processes at WWTPs. IMPORTANCE Clostridium difficile infection (CDI) is a leading cause of antimicrobial-associated diarrhea in health care facilities. Extended hospital stays and recurrences increase the cost of treatment and morbidity and mortality. Community-associated CDI (CA-CDI) cases, with no history of antimicrobial use or exposure to health care settings, are increasing. The isolation of clinically important C. difficile strains from animals, rivers, soil, meat, vegetables, compost, treated wastewater, and biosolids has been reported. The objective of this study was to characterize C. difficile in wastewater treatment plants (WWTPs) in Australia. We found that C. difficile can survive the treatment processes of WWTPs, and toxigenic C. difficile was being released into the environment, becoming a potential source/reservoir for CA-CDI.


Subject(s)
Clostridioides difficile , Clostridium Infections , Water Purification , Animals , Humans , Clostridioides difficile/genetics , Clostridioides , Western Australia/epidemiology , Biosolids , Anti-Bacterial Agents/pharmacology , Clostridium Infections/epidemiology , Clostridium/genetics , Spores , Microbial Sensitivity Tests
3.
Euro Surveill ; 27(15)2022 04.
Article in English | MEDLINE | ID: mdl-35426363

ABSTRACT

BackgroundWhile human-to-human transmission of Clostridioides difficile occurs often, other infection sources, including food, animals and environment, are under investigation.AimWe present a large study on C. difficile in a food item in Europe, encompassing 12 European countries (Austria, France, Greece, Ireland, Italy, the Netherlands, Poland, Slovakia, Spain, Sweden, Romania and the United Kingdom).MethodsPotato was selected because of availability, ease of sampling and high C. difficile positivity rates. Identical protocols for sampling and isolation were used, enabling a direct comparison of the C. difficile positivity rate.ResultsFrom C. difficile-positive potato samples (33/147; 22.4%), we obtained 504 isolates, grouped into 38 PCR ribotypes. Positivity rates per country varied (0-100%) and were at least 10% in 9/12 countries. No geographical clustering of samples with high positivity rates or in PCR ribotype distribution was observed. The most frequently detected PCR ribotypes (014/020, 078/126, 010 and 023) are also commonly reported in Europe among human clinically relevant isolates, in animal isolates and in the environment. Whole genome sequencing revealed several genetically related strain pairs (Spain/RT126, France/RT010, Austria and Sweden/RT276) and a cluster of very similar strains in RT078/126.ConclusionOur results suggest, the high potato contamination rates could have public health relevance. They indicate potatoes can serve as a vector for introducing C. difficile spores in the household environment, where the bacterium can then multiply in sensitive hosts with disrupted or unmature microbiota. Potato contamination with PCR ribotypes shared between humans, animals and soil is supportive of this view.


Subject(s)
Clostridioides difficile , Clostridium Infections , Solanum tuberosum , Animals , Clostridioides , Clostridioides difficile/genetics , Clostridium Infections/diagnosis , Clostridium Infections/epidemiology , Clostridium Infections/microbiology , Europe/epidemiology , Humans , Polymerase Chain Reaction , Ribotyping , Solanum tuberosum/genetics
4.
J Antimicrob Chemother ; 75(11): 3120-3125, 2020 11 01.
Article in English | MEDLINE | ID: mdl-32747931

ABSTRACT

OBJECTIVES: To investigate the molecular epidemiology and antimicrobial susceptibility of Clostridioides difficile isolates from patients with C. difficile infection (CDI) from two Phase 3 clinical trials of surotomycin. METHODS: In both trials [Protocol MK-4261-005 (NCT01597505) conducted across Europe, North America and Israel; and Protocol MK-4261-006 (NCT01598311) conducted across North America, Asia-Pacific and South America], patients with CDI were randomized (1:1) to receive oral surotomycin (250 mg twice daily) or oral vancomycin (125 mg four times per day) for 10 days. Stool samples were collected at baseline and C. difficile isolates were characterized by restriction endonuclease analysis (REA) and PCR ribotyping. Susceptibility testing was performed by agar dilution, according to CLSI recommendations. RESULTS: In total, 1147 patients were included in the microbiological modified ITT population. Of 992 recovered isolates, 922 (92.9%) were typed. There was a high association between REA groups and their corresponding predominant PCR ribotype (RT) for BI, DH, G and CF strains. REA group A showed more diverse PCR RTs. Overall, the most common strain was BI/RT027 (20.3%) followed by Y/RT014/020 (15.0%) and DH/RT106 (7.2%). The BI/RT027 strain was particularly prevalent in Europe (29.9%) and Canada (23.6%), with lower prevalence in the USA (16.8%) and Australia/New Zealand (3.4%). Resistance was most prevalent in the BI/RT027 strain, particularly to metronidazole, vancomycin and moxifloxacin. CONCLUSIONS: A wide variation in C. difficile strains, both within and across different geographical regions, was documented by both REA and ribotyping, which showed overall good correlation.


Subject(s)
Anti-Infective Agents , Clostridioides difficile , Clostridium Infections , Anti-Bacterial Agents/pharmacology , Anti-Bacterial Agents/therapeutic use , Asia , Canada , Clostridioides , Clostridioides difficile/genetics , Clostridium Infections/drug therapy , Clostridium Infections/epidemiology , DNA Restriction Enzymes , Europe , Humans , Israel , Lipopeptides , Microbial Sensitivity Tests , North America , Peptides, Cyclic , Polymerase Chain Reaction , Prohibitins , Ribotyping , South America
5.
Article in English | MEDLINE | ID: mdl-31964789

ABSTRACT

Clostridioides difficile infection (CDI) is a health care-associated infection associated with significant morbidity and cost, with highly varied risk across populations. More effective, risk-based prevention strategies are needed. Here, we investigate risk factors for hospital-associated CDI in a large integrated health system. In a retrospective cohort of all adult admissions to 21 Intermountain Healthcare hospitals from 2006 to 2012, we identified all symptomatic (i) hospital-onset and (ii) health care-facility-associated, community-onset CDI. We then evaluated the risk associated with antibiotic exposure, including that of specific agents, using multivariable logistic regression. A total of 2,356 cases of CDI among 506,068 admissions were identified (incidence, 46.6 per 10,000). Prior antibiotic use was the dominant risk factor, where for every antibiotic day of therapy prior to the index admission, the odds of subsequent CDI increased by 12.8% (95% confidence interval [CI], 12.2 to 13.4%; P < 0.0001). This was a much stronger association than was inpatient antibiotic exposure (odds ratio [OR], 1.007 [95% CI, 1.005 to 1.009]; P < 0.0001). The highest-risk antibiotics included second-generation and later cephalosporins (especially oral), carbapenems, fluoroquinolones, and clindamycin, while doxycycline and daptomycin were associated with a lower CDI risk. We concluded that cumulative antibiotic exposure prior to admission is the greatest contributor to the risk of subsequent CDI. Most classes of antibiotics carry some risk, which varies by drug and route. This information may be useful for antimicrobial stewardship efforts.


Subject(s)
Adaptation, Physiological/drug effects , Anti-Bacterial Agents/adverse effects , Antimicrobial Stewardship , Clostridioides difficile/drug effects , Clostridium Infections/drug therapy , Cross Infection/microbiology , Adaptation, Physiological/genetics , Anti-Bacterial Agents/therapeutic use , Carbapenems/adverse effects , Carbapenems/therapeutic use , Cephalosporins/adverse effects , Cephalosporins/therapeutic use , Clindamycin/adverse effects , Clindamycin/therapeutic use , Clostridioides difficile/genetics , Cross Infection/chemically induced , Cross Infection/drug therapy , Daptomycin/adverse effects , Daptomycin/therapeutic use , Doxycycline/adverse effects , Doxycycline/therapeutic use , Drug Resistance, Bacterial/genetics , Female , Fluoroquinolones/adverse effects , Fluoroquinolones/therapeutic use , Humans , Male , Middle Aged , Retrospective Studies
6.
Food Microbiol ; 78: 194-200, 2019 Apr.
Article in English | MEDLINE | ID: mdl-30497603

ABSTRACT

Clostridium difficile, recently reclassified to Clostridioides difficile, is among most important causes of intestinal infections in humans. Zoonotic potential and foodborne transmissions are considered to be partially involved in C. difficile spread. Here we report prevalence of C. difficile in 142 retail and 12 homegrown vegetables in Slovenia between years 2014 and 2017. The overall prevalence of C. difficile on vegetables was 18,2% (28/154). A total of 115 isolates were obtained which belonged to 25 PCR ribotypes. Ten of those were toxigenic and PCR ribotype 014/020 was the most prevalent. Most of 25 determined PCR ribotypes were previously reported in humans, animals, soil or water in Slovenia. Among tested vegetables, potatoes had the highest positivity rate (28,0% vs. 6,7% and 9,4% for ginger and leaf vegetables). Altogether 66,7% of C. difficile positive potato samples were imported from 12 different countries of three different continents. The origin of contamination could be any point between production and retail store, however, our results suggest a possibility that potatoes represent a transnational and transcontinental way of C. difficile transmissions.


Subject(s)
Clostridioides difficile/isolation & purification , Food Microbiology , Solanum tuberosum/microbiology , Vegetables/microbiology , Animals , Clostridioides difficile/genetics , Clostridium Infections/microbiology , Clostridium Infections/transmission , Feces/microbiology , Foodborne Diseases/epidemiology , Foodborne Diseases/microbiology , Foodborne Diseases/prevention & control , Humans , Polymerase Chain Reaction/methods , Prevalence , Ribotyping , Slovenia/epidemiology , Zoonoses/epidemiology , Zoonoses/microbiology , Zoonoses/prevention & control
7.
J Infect Chemother ; 24(8): 641-647, 2018 Aug.
Article in English | MEDLINE | ID: mdl-29685855

ABSTRACT

We conducted a nationwide molecular epidemiological study of Clostridium difficile infection (CDI) in Japan investigated the correlation between the presence of binary toxin genes and CDI severity. This is the first report on molecular epidemiological analyses for CDI in multiple university hospitals in Japan, to our knowledge. We examined 124,484 hospitalized patients in 25 national and public university hospitals in Japan between December 2013 and March 2014, investigating antimicrobial susceptibilities and toxin-related genes for C. difficile isolates from stools. Epidemiological genetic typing was performed by PCR-ribotyping and repetitive sequence-based (rep)-PCR to examine the genetic similarities. The results detected toxin A-positive, toxin B-positive, binary toxin-negative (A+B+CDT-) detected from 135 isolates (80.8%) and toxin A-negative, toxin B-positive, binary toxin-negative (A- B+CDT-) in 23 (13.8%). Toxin A-positive, toxin B-positive, and binary toxin-positive (A+B+CDT+) were seen in 9 isolates (5.4%). Vancomycin (n = 81, 37.7%) or metronidazole (n = 88, 40.9%) therapies were undertaken in analyzed cases. Ribotypes detected from isolates were 017/subgroup 1, 070, 078, 126, 176, 449, 475/subgroup 1, 499, 451, 566 and newtypes. Rep-PCR classified 167 isolates into 28 cluster groups including 2-15 isolates. In addition, 2 pairs of strains isolated from different institutions belonged to the same clusters. Seven out of 9 (77.8%) of the patients with binary toxin producing strains had "mild to moderate" outcome in evaluated symptoms. In conclusion, we found that binary toxin did not show regional specificity and had no relevance to severity of CDI.


Subject(s)
Anti-Bacterial Agents/therapeutic use , Clostridioides difficile/genetics , Clostridium Infections/epidemiology , Hospitals, University/statistics & numerical data , ADP Ribose Transferases/genetics , Adolescent , Adult , Aged , Aged, 80 and over , Bacterial Proteins/genetics , Clostridioides difficile/drug effects , Clostridioides difficile/isolation & purification , Clostridium Infections/drug therapy , Clostridium Infections/microbiology , Epidemiological Monitoring , Feces/microbiology , Female , Humans , Inhibitory Concentration 50 , Japan/epidemiology , Male , Metronidazole/therapeutic use , Microbial Sensitivity Tests , Middle Aged , Molecular Epidemiology , Polymerase Chain Reaction , Ribotyping/methods , Severity of Illness Index , Vancomycin/pharmacology , Vancomycin/therapeutic use , Young Adult
8.
Interdiscip Sci ; 10(3): 583-604, 2018 Sep.
Article in English | MEDLINE | ID: mdl-28217823

ABSTRACT

This study explores computational screening and molecular docking approaches to screen novel herbal therapeutics against probable drug targets of Clostridium difficile. The essential genes were predicted by comparative genome analysis of C. difficile and best homologous organisms using BLAST search at database of essential genes (DEG). The functions of these genes in various metabolic pathways were predicted and some of these genes were considered as potential targets. Three major proteins were selected as putative targets, namely permease IIC component, ABC transporter and histidine kinase. The three-dimensional structures of these targets were predicted by molecular modelling. The herbal bioactive compounds were screened by computer-aided virtual screening and binding potentials against the drug targets were predicted by molecular docking. Quercetin present in Psidium guajava (binding energy of -9.1 kcal/mol), Ellagic acid found in Punica granatum and Psidium guajava (binding energy -9.0 kcal/mol) and Curcumin, present in Curcuma longa (binding energy -7.8 kcal/mol) demonstrated minimum binding energy and more number of interacting residues with the drug targets. Further, comparative study revealed that phytoligands demonstrated better binding affinities to the drug targets in comparison with usual ligands. Thus, this investigation explores the therapeutic probabilities of selected phytoligands against the putative drug targets of C. difficile.


Subject(s)
Anti-Bacterial Agents/pharmacology , Clostridioides difficile/drug effects , Drug Evaluation, Preclinical , Molecular Docking Simulation , Phytochemicals/pharmacology , User-Computer Interface , Amino Acid Sequence , Bacterial Proteins/chemistry , Clostridioides difficile/genetics , Genes, Bacterial , Genes, Essential , Ligands , Metabolic Networks and Pathways , Phylogeny , Phytotherapy , Toxicity Tests
10.
J Appl Microbiol ; 124(2): 585-590, 2018 Feb.
Article in English | MEDLINE | ID: mdl-29193458

ABSTRACT

AIMS: The incidence of community-associated Clostridium difficile infection (CA-CDI) in Australia has increased since mid-2011. With reports of clinically important C. difficile strains being isolated from retail foods in Europe and North America, a foodborne source of C. difficile in cases of CA-CDI is a possibility. This study represents the first to investigate the prevalence and genotypes of C. difficile in Australian retail vegetables. METHODS AND RESULTS: A total of 300 root vegetables grown in Western Australia (WA) were collected from retail stores and farmers' markets. Three vegetables of the same kind bought from the same store/market were treated as one sample. Selective enrichment culture, toxin profiling and PCR ribotyping were performed. Clostridium difficile was isolated from 30% (30/100) of pooled vegetable samples, 55·6% of organic potatoes, 50% of nonorganic potatoes, 22·2% of organic beetroots, 5·6% of organic onions and 5·3% of organic carrots. Over half (51·2%, 22/43) the isolates were toxigenic. Many of the ribotypes of C. difficile isolated were common among human and Australian animals. CONCLUSIONS: Clostridium difficile could be found commonly on retail root vegetables of WA. This may be potential sources for CA-CDI. SIGNIFICANCE AND IMPACT OF THE STUDY: This study enhances knowledge of possible sources of C. difficile in the Australian community, outside the hospital setting.


Subject(s)
Clostridioides difficile/isolation & purification , Plant Roots/microbiology , Vegetables/microbiology , Animals , Beta vulgaris/microbiology , Clostridioides difficile/classification , Clostridioides difficile/genetics , Clostridioides difficile/growth & development , Daucus carota/microbiology , Humans , Onions/microbiology , Polymerase Chain Reaction , Prevalence , Ribotyping , Solanum tuberosum/microbiology , Western Australia
11.
Sci Rep ; 7(1): 14672, 2017 11 07.
Article in English | MEDLINE | ID: mdl-29116155

ABSTRACT

Clostridium difficile is a significant concern as a nosocomial pathogen, and genetic tools are important when analyzing the physiology of such organisms so that the underlying physiology/pathogenesis of the organisms can be studied. Here, we used TargeTron to investigate the role of selenoproteins in C. difficile Stickland metabolism and found that a TargeTron insertion into selD, encoding the selenophosphate synthetase that is essential for the specific incorporation of selenium into selenoproteins, results in a significant growth defect and a global loss of selenium incorporation. However, because of potential polar effects of the TargeTron insertion, we developed a CRISPR-Cas9 mutagenesis system for C. difficile. This system rapidly and efficiently introduces site-specific mutations into the C. difficile genome (20-50% mutation frequency). The selD CRISPR deletion mutant had a growth defect in protein-rich medium and mimicked the phenotype of a generated TargeTron selD mutation. Our findings suggest that Stickland metabolism could be a target for future antibiotic therapies and that the CRISPR-Cas9 system can introduce rapid and efficient modifications into the C. difficile genome.


Subject(s)
Clostridioides difficile/metabolism , Gene Editing/methods , Selenoproteins/metabolism , CRISPR-Associated Protein 9 , CRISPR-Cas Systems , Clostridioides difficile/genetics , Electrophoresis, Polyacrylamide Gel , Genes, Bacterial/genetics , Phosphotransferases/genetics , Phosphotransferases/metabolism , Selenium/metabolism , Selenoproteins/genetics
12.
PLoS One ; 12(8): e0182815, 2017.
Article in English | MEDLINE | ID: mdl-28800598

ABSTRACT

BACKGROUND: Clostridium difficile infection (CDI) is a significant nosocomial infection worldwide, that recurs in as many as 35% of infections. Risk of CDI recurrence varies by ribotype, which also vary in sporulation and germination rates. Whether sporulation/germination mediate risk of recurrence and effectiveness of treatment of recurring CDI remains unclear. We aim to assess the role of sporulation/germination patterns on risk of recurrence, and the relative effectiveness of the recommended tapered/pulsing regimens using an in silico model. METHODS: We created a compartmental in-host mathematical model of CDI, composed of vegetative cells, toxins, and spores, to explore whether sporulation and germination have an impact on recurrence rates. We also simulated the effectiveness of three tapered/pulsed vancomycin regimens by ribotype. RESULTS: Simulations underscored the importance of sporulation/germination patterns in determining pathogenicity and transmission. All recommended regimens for recurring CDI tested were effective in reducing risk of an additional recurrence. Most modified regimens were still effective even after reducing the duration or dosage of vancomycin. However, the effectiveness of treatment varied by ribotype. CONCLUSION: Current CDI vancomycin regimen for treating recurrent cases should be studied further to better balance associated risks and benefits.


Subject(s)
Anti-Bacterial Agents/pharmacology , Clostridioides difficile/drug effects , Clostridium Infections/drug therapy , Models, Statistical , Spores, Bacterial/drug effects , Vancomycin/pharmacology , Anti-Bacterial Agents/pharmacokinetics , Bacterial Toxins/antagonists & inhibitors , Bacterial Toxins/biosynthesis , Clostridioides difficile/classification , Clostridioides difficile/genetics , Clostridioides difficile/growth & development , Clostridium Infections/microbiology , Clostridium Infections/pathology , Computer Simulation , Drug Administration Schedule , Drug Dosage Calculations , Humans , Microbial Sensitivity Tests , Recurrence , Ribotyping , Spores, Bacterial/growth & development , Spores, Bacterial/pathogenicity , Vancomycin/pharmacokinetics
13.
Article in English | MEDLINE | ID: mdl-29376034

ABSTRACT

Clostridium difficile, a major cause of nosocomial diarrhea and pseudomembranous colitis, still poses serious health-care challenges. The expression of its two main virulence factors, TcdA and TcdB, is reportedly repressed by cysteine, but molecular mechanism remains unclear. The cysteine desulfidase CdsB affects the virulence and infection progresses of some bacteria. The C. difficile strain 630 genome encodes a homolog of CdsB, and in the present study, we analyzed its role in C. difficile 630Δerm by constructing an isogenic ClosTron-based cdsB mutant. When C. difficile was cultured in TY broth supplemented with cysteine, the cdsB gene was rapidly induced during the exponential growth phase. The inactivation of cdsB not only affected the resistance of C. difficile to cysteine, but also altered the expression levels of intracellular cysteine-degrading enzymes and the production of hydrogen sulfide. This suggests that C. difficile CdsB is a major inducible cysteine-degrading enzyme. The inactivation of the cdsB gene in C. difficile also removed the cysteine-dependent repression of toxin production, but failed to remove the Na2S-dependent repression, which supports that the cysteine-dependent repression of toxin production is probably attributable to the accumulation of cysteine by-products. We also mapped a δ54 (SigL)-dependent promoter upstream from the cdsB gene, and cdsB expression was not induced in response to cysteine in the cdsR::ermB or sigL::ermB strain. Using a reporter gene fusion analysis, we identified the necessary promoter sequence for cysteine-dependent cdsB expression. Taken together, these results indicate that CdsB is a key inducible cysteine desulfidase in C. difficile which is regulated by δ54 and CdsR in response to cysteine and that cysteine-dependent regulation of toxin production is closely associated with cysteine degradation.


Subject(s)
Clostridioides difficile/enzymology , Clostridioides difficile/genetics , Cysteine/metabolism , Gene Expression Regulation, Bacterial , Bacterial Proteins/biosynthesis , Bacterial Toxins/biosynthesis , Binding Sites , Clostridioides difficile/metabolism , Enterotoxins/biosynthesis , Gene Deletion , Hydrogen Sulfide/metabolism , Promoter Regions, Genetic , RNA Polymerase Sigma 54/metabolism , Sulfates/metabolism
14.
PLoS One ; 11(8): e0161411, 2016.
Article in English | MEDLINE | ID: mdl-27536994

ABSTRACT

Clostridium difficile infection (CDI) is a leading and an important cause of diarrhea in a healthcare setting especially in industrialized countries. Community-associated CDI appears to add to the burden on healthcare setting problems. The aim of the study was to investigate the antimicrobial resistance of healthcare-associated and community-acquired C. difficile infection over 5 years (2008-2012) in Kuwait. A total of 111 hospital-acquired (HA-CD) and 35 community-acquired Clostridium difficile (CA-CD) clinical isolates from stool of patients with diarrhoea were studied. Antimicrobial susceptibility testing of 15 antimicrobial agents against these pathogens was performed using E test method. There was no evidence of resistance to amoxicillin-clavulanic acid, daptomycin, linezolid, piperacillin-tazobactam, teicoplanin and vancomycin by both HA-CD and CA-CD isolates. Metronidazole had excellent activity against CA-CD but there was a 2.9% resistance rate against HA-CD isolates. Ampicillin, clindamycin, levofloxacin and imipenem resistance rates among the HC-CD vs. CA-CD isolates were 100 vs. 47.4%; 43 vs. 47.4%; 100 vs. 100% and 100 vs. 89%, respectively. An unexpected high rifampicin resistance rate of 15.7% emerged amongst the HA-CD isolates. In conclusion, vancomycin resistance amongst the HA-CD and CA-CD isolates was not encountered in this series but few metronidazole resistant hospital isolates were isolated. High resistance rates of ampicillin, clindamycin, levofloxacin, and imipenem resistance were evident among both CA-CD and HA-CD isolates. Rifampicin resistance is emerging among the HA-CD isolates.


Subject(s)
Anti-Bacterial Agents/therapeutic use , Clostridioides difficile/drug effects , Cross Infection/epidemiology , Enterocolitis, Pseudomembranous/epidemiology , Clostridioides difficile/genetics , Community-Acquired Infections/drug therapy , Community-Acquired Infections/epidemiology , Community-Acquired Infections/microbiology , Cross Infection/drug therapy , Cross Infection/microbiology , Diarrhea/drug therapy , Diarrhea/epidemiology , Diarrhea/microbiology , Drug Resistance, Bacterial/genetics , Enterocolitis, Pseudomembranous/drug therapy , Enterocolitis, Pseudomembranous/microbiology , Humans , Kuwait/epidemiology , Microbial Sensitivity Tests , Population Surveillance , Ribotyping
15.
Cold Spring Harb Perspect Med ; 6(2): a025445, 2016 Feb 01.
Article in English | MEDLINE | ID: mdl-26834162

ABSTRACT

Clostridium difficile is the most common cause of antibacterial-associated diarrhea. Clear clinical presentation and rapid diagnostics enable targeted therapy for C. difficile infection (CDI) to start quickly. CDI treatment includes metronidazole and vancomycin (VAN). Despite decades of use for CDI, no clinically meaningful resistance to either agent has emerged. Fidaxomicin (FDX), an RNA polymerase inhibitor, is also approved to treat CDI. Mutants with reduced susceptibility to FDX have been selected in vitro by single and multistep methods. Strains with elevated FDX minimum inhibitory concentrations (MICs) were also identified from FDX-treated patients in clinical trials. LFF571 is an exploratory agent that inhibits EF-Tu. In a proof-of-concept study, LFF571 was safe and effective for treating CDI. Spontaneous mutants with reduced susceptibility to LFF571 were selected in vitro in a single step, but not via serial passage. Although there are several agents in development for treatment of CDI, this review summarizes the frequencies and mechanisms of C. difficile mutants displaying reduced susceptibility to FDX or LFF71.


Subject(s)
Aminoglycosides/therapeutic use , Anti-Bacterial Agents/therapeutic use , Clostridium Infections/drug therapy , Thiazoles/therapeutic use , Aminoglycosides/chemistry , Aminoglycosides/pharmacology , Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/pharmacology , Clinical Trials, Phase III as Topic , Clostridioides difficile/drug effects , Clostridioides difficile/genetics , Drug Resistance, Bacterial/genetics , Fidaxomicin , Genotype , Humans , Microbial Sensitivity Tests , Mutation , Thiazoles/chemistry , Thiazoles/pharmacology
16.
J Food Sci ; 80(12): M2925-31, 2015 Dec.
Article in English | MEDLINE | ID: mdl-26556797

ABSTRACT

Clostridium difficile infection (CDI) is the most prevalent cause of health-care-associated infections. CDI-related health-care costs and deaths are both increasing annually on a global scale. C. difficile have been reported in food products in Canada, Europe, and the United States; however, the systematic transmission of C. difficile between humans and animals is yet to be understood. Because of the limitations of current therapeutic options, there is a need for the development of new patient treatments. Epigallocatechin gallate (EGCG) is a major catechin compound found in green tea extracts and exhibits antioxidant and antimicrobial activities. This study was conducted to investigate the inhibitory effects of EGCG on the expression of virulence genes in C. difficile and in C. difficile-associated diseases by inhibition of quorum sensing. The protein expression of autoinducer-2 (AI-2) was evaluated by AI-2 activity. EGCG at various concentrations had an inhibitory effect on AI-2 production, especially at 10 µg/mL. EGCG also significantly repressed the transcription of virulence genes, including luxS and tcdA, and prolonged the survival of Caenorhabditis elegans infected with C. difficile. Furthermore, treatment with EGCG effectively protected C. difficile-infected mice from C. difficile-induced death. Histological analysis of the colon and cecum of these mice revealed that EGCG protected tissues of the lower intestinal tract from damage. EGCG exerted growth-inhibitory and bactericidal activities on C. difficile in C. difficile-infected mice. Our results suggest that EGCG has significant antipathogenic effects on C. difficile and can be used to prevent or treat C. difficile-associated diseases or C. difficile infections.


Subject(s)
Anti-Bacterial Agents/therapeutic use , Camellia sinensis/chemistry , Catechin/analogs & derivatives , Clostridioides difficile/drug effects , Clostridium Infections/drug therapy , Phytotherapy , Virulence/drug effects , Animals , Anti-Bacterial Agents/pharmacology , Caenorhabditis elegans , Catechin/pharmacology , Catechin/therapeutic use , Clostridioides difficile/genetics , Clostridioides difficile/growth & development , Clostridioides difficile/pathogenicity , Clostridium Infections/microbiology , Clostridium Infections/pathology , Gene Expression/drug effects , Genes, Bacterial , Homoserine/analogs & derivatives , Homoserine/metabolism , Lactones/metabolism , Mice , Plant Extracts/pharmacology , Plant Extracts/therapeutic use , Polymerase Chain Reaction , Quorum Sensing , Ribotyping , Species Specificity , Virulence/genetics
17.
J Clin Microbiol ; 53(11): 3702-4, 2015 Nov.
Article in English | MEDLINE | ID: mdl-26354812

ABSTRACT

Large clostridial toxin-negative, binary toxin-positive (A(-) B(-) CDT(+)) strains of Clostridium difficile are almost never associated with clinically significant C. difficile infection (CDI), possibly because such strains are not detected by most diagnostic methods. We report the isolation of an A(-) B(-) CDT(+) ribotype 033 (RT033) strain of C. difficile from a young patient with ulcerative colitis and severe diarrhea.


Subject(s)
ADP Ribose Transferases/genetics , Anti-Bacterial Agents/therapeutic use , Bacterial Proteins/genetics , Bacterial Toxins/genetics , Clostridioides difficile/genetics , Enterocolitis, Pseudomembranous/drug therapy , Enterotoxins/genetics , ADP Ribose Transferases/metabolism , Adolescent , Australia , Bacterial Proteins/metabolism , Clostridioides difficile/isolation & purification , Clostridioides difficile/pathogenicity , Colitis, Ulcerative/microbiology , Enterocolitis, Pseudomembranous/microbiology , Feces/microbiology , Humans , Male , Microbial Sensitivity Tests , Recurrence
18.
Surgery ; 157(1): 96-103, 2015 Jan.
Article in English | MEDLINE | ID: mdl-25061002

ABSTRACT

BACKGROUND: Current Clostridium difficile infection (CDI) antibiotic regimens have become increasingly ineffective at achieving cure and preventing recurrence. A recently developed alternative to conventional antibiotics are phage tail-like particles (PTLPs), which are proteins that are morphologically similar to bacteriophages and are produced by C difficile. This study examines the in vitro killing spectrum of a previously unreported PTLP isolated from a clinical isolate of C difficile. METHODS: Using patient-derived samples from an institutional review board-approved C difficile tissue bank, a ribotype 078 C difficile isolate was anaerobically incubated on blood agar plates that were preswabbed with norfloxacin to induce the production of PTLPs. Concentrated PTLP populations were confirmed using transmission electron microscopy. Using a standard lawn spot approach, bactericidal activity was assessed as indicated by a clearing within the bacterial lawn. The PTLP genomic cluster was also fully sequenced and open reading frames were annotated according to predicted function. RESULTS: PTLPs were assessed using 64 patient-derived C difficile isolates of varying ribotypes. PTLPs demonstrated complete bactericidal activity in 21 of 25 ribotype 027 isolates with partial activity in 2 of the 25. Complete bactericidal activity was not demonstrated against any other ribotype or non-difficile bacteria, suggesting a species and ribotype specificity. Functional genes, which may be necessary for killing, were identified within the PTLP genetic locus. CONCLUSION: PTLPs demonstrate capability in eradicating C difficile in vitro, and with further development, may represent an organism-specific, microbiome-sparing therapy for CDI.


Subject(s)
Bacterial Proteins/therapeutic use , Clostridioides difficile/metabolism , Enterocolitis, Pseudomembranous/drug therapy , Bacterial Proteins/metabolism , Clostridioides difficile/genetics , Humans , Microbial Sensitivity Tests , Ribotyping , Sequence Analysis, DNA
19.
J Infect Chemother ; 20(6): 380-3, 2014 Jun.
Article in English | MEDLINE | ID: mdl-24726377

ABSTRACT

In December 2012, a 32-year-old woman with no previous medical history and no previous antibiotic treatment had a fever and diarrhea 2 days after a cesarean section in which cefazolin was used as a prophylactic antimicrobial agent. She was transferred to our hospital 5 days after the cesarean for severe colitis. A rapid test of stool for Clostridium difficile toxin A and B was positive. Although oral vancomycin (0.5-2.0 g/day) and intravenous immunoglobulin (5 g/day) were administered after her transfer, 7 days after admission emergency exploratory surgery was performed because of poor response to therapy. Bowel perforation was noted and a temporary colostomy was created without colectomy. Vancomycin (2.0 g/day) was administered via the colostomy, in addition to a vancomycin enema (2.0 g/day), oral metronidazole (1500 mg/day), and oral vancomycin (2.0 g/day). Three days after the operation, linezolid (1200 mg/day IV) was added. She was treated with antibiotics against C. difficile for a total of 18 days after the operation. The same strain was not isolated from other patients in the same ward. Microbiological analysis of the isolate revealed housekeeping gene (tpi), toxin A gene (tcdA), toxin B gene (tcdB), and binary toxin gene (cdtA and cdtB). DNA sequencing of tcdC revealed a base 117 deletion and contained an 18-bp tcdC deletion. PCR ribotyping showed ribotype 027 patterns. The MIC of moxifloxacin was >32 µg/ml, indicating resistance to fluoroquinolones. This isolate was considered as the epidemic strain. Our case of fulminant colitis is apparently the first case involving the epidemic strain ribotype 027 in Japan.


Subject(s)
Clostridioides difficile/isolation & purification , Enterocolitis, Pseudomembranous/microbiology , Adult , Anti-Bacterial Agents/therapeutic use , Clostridioides difficile/classification , Clostridioides difficile/genetics , Colostomy , Enterocolitis, Pseudomembranous/drug therapy , Enterocolitis, Pseudomembranous/surgery , Epidemics , Female , Humans , Japan , Ribotyping
20.
Antimicrob Agents Chemother ; 58(2): 901-8, 2014.
Article in English | MEDLINE | ID: mdl-24277035

ABSTRACT

Cadazolid is a new oxazolidinone-type antibiotic currently in clinical development for the treatment of Clostridium difficile-associated diarrhea. Here, we report investigations on the mode of action and the propensity for spontaneous resistance development in C. difficile strains. Macromolecular labeling experiments indicated that cadazolid acts as a potent inhibitor of protein synthesis, while inhibition of DNA synthesis was also observed, albeit only at substantially higher concentrations of the drug. Strong inhibition of protein synthesis was also obtained in strains resistant to linezolid, in agreement with low MICs against such strains. Inhibition of protein synthesis was confirmed in coupled transcription/translation assays using extracts from different C. difficile strains, including strains resistant to linezolid, while inhibitory effects in DNA topoisomerase assays were weak or not detectable under the assay conditions. Spontaneous resistance frequencies of cadazolid were low in all strains tested (generally <10(-10) at 2× to 4× the MIC), and in multiple-passage experiments (up to 13 passages) MICs did not significantly increase. Furthermore, no cross-resistance was observed, as cadazolid retained potent activity against strains resistant or nonsusceptible to linezolid, fluoroquinolones, and the new antibiotic fidaxomicin. In conclusion, the data presented here indicate that cadazolid acts primarily by inhibition of protein synthesis, with weak inhibition of DNA synthesis as a potential second mode of action, and suggest a low potential for spontaneous resistance development.


Subject(s)
Anti-Bacterial Agents/pharmacology , Clostridioides difficile/drug effects , Drug Resistance, Bacterial/genetics , Protein Biosynthesis/drug effects , Acetamides/pharmacology , Aminoglycosides/pharmacology , Clostridioides difficile/genetics , Clostridioides difficile/growth & development , Clostridioides difficile/metabolism , DNA Gyrase/genetics , DNA Gyrase/metabolism , Drug Resistance, Bacterial/drug effects , Fidaxomicin , Fluoroquinolones/pharmacology , Linezolid , Microbial Sensitivity Tests , Oxazolidinones/pharmacology , Protein Biosynthesis/genetics , RNA/antagonists & inhibitors , RNA/biosynthesis , Recombinant Proteins , Subcellular Fractions/chemistry , Subcellular Fractions/metabolism , Transcription, Genetic/drug effects , Vancomycin/pharmacology
SELECTION OF CITATIONS
SEARCH DETAIL