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1.
Sensors (Basel) ; 19(14)2019 Jul 12.
Article in English | MEDLINE | ID: mdl-31336874

ABSTRACT

We present a monolithic biosensor platform, based on carbon-nanotube field-effect transistors (CNTFETs), for the detection of the neurotransmitter glutamate. We used an array of 9'216 CNTFET devices with 96 integrated readout and amplification channels that was realized in complementary metal-oxide semiconductor technology (CMOS). The detection principle is based on amperometry, where electrochemically active hydrogen peroxide, a product of the enzymatic reaction of the target analyte and an enzyme that was covalently bonded to the CNTFET, modulated the conductance of the CNTFET-based sensors. We assessed the performance of the CNTs as enzymatic sensors by evaluating the minimal resolvable concentration change of glutamate in aqueous solutions. The minimal resolvable concentration change amounted to 10 µM of glutamate, which was one of the best values reported for CMOS-based systems so far.


Subject(s)
Amino Acid Oxidoreductases/chemistry , Biosensing Techniques/instrumentation , Electrochemical Techniques/instrumentation , Electrochemical Techniques/methods , Glutamic Acid/analysis , Nanotubes, Carbon/chemistry , Calibration , Electrodes , Electrophoresis/instrumentation , Electrophoresis/methods , Equipment Design , Hydrogen-Ion Concentration , Neurotransmitter Agents/analysis , Semiconductors , Sensitivity and Specificity , Solutions/chemistry , Water/chemistry
2.
Luminescence ; 34(1): 113-124, 2019 Feb.
Article in English | MEDLINE | ID: mdl-30604519

ABSTRACT

Novel palladium(II) complexes (7a-7e) of substituted quinoline derivatives were synthesized. The complexes were characterized using various techniques such as thermogravimetric analysis (TGA), elemental analysis, conductance measurement, mass, absorption, infra-red (IR), 1 H NMR, 13 C NMR and energy-dispersive X-ray spectroscopy (EDX). Complexes for herring sperm DNA (HS DNA) binding were explored and absorption titration and the binding constant (Kb ) as well as Gibb's free energy were evaluated. Complex 7d exhibited the highest binding constant, therefore the thermodynamic parameters of 7d at different temperatures were evaluated. To support the results of the absorption titration, fluorescence titration, viscosity measurement and molecular docking studies were performed. The fluorescence quenching data as evaluated from Stern-Volmer equation were used to calculate KSV , Kf and the number of binding sites. The results of all these studies were in good agreement with the absorption study. DNA electrophoretic mobility was performed to explore the possible application of metal complexes as artificial metallonucleases. The antibacterial activity of the complexes was accessed against different pathogenic bacteria and cytotoxicity was measured using brine shrimp and S. pombe.


Subject(s)
Coordination Complexes/chemistry , Coordination Complexes/pharmacology , DNA, B-Form/chemistry , Palladium/chemistry , Animals , Anti-Infective Agents/chemistry , Anti-Infective Agents/pharmacology , Artemia/drug effects , Binding Sites , Coordination Complexes/chemical synthesis , DNA, B-Form/metabolism , Drug Evaluation, Preclinical/methods , Electrophoresis/methods , Electrophoretic Mobility Shift Assay , Ligands , Magnetic Resonance Spectroscopy , Molecular Docking Simulation , Quinolines/chemistry , Schizosaccharomyces/drug effects , Spectrometry, Fluorescence , Spectrometry, X-Ray Emission , Thermodynamics
3.
Acta Vet Hung ; 66(4): 573-586, 2018 12.
Article in English | MEDLINE | ID: mdl-30580538

ABSTRACT

Twenty-eight warmblood mares were monitored during their late pregnancy in the Teaching Hospital of Ghent University. The reliability of two commercial assays (enzyme immunoassay and glutaraldehyde coagulation test) used for determining the IgG concentrations of their newborn foals was tested. Mammary secretions were examined at the time of foaling (T0), and then 4 (T1) and 8 (T2) hours after foaling by refractometry and electrophoresis. The foals' blood IgG levels were measured at T1 and T2 as a routine clinical diagnostic examination using two different commercial test kits (SNAP Foal Ig and Gamma-Check E) and T0, T1 and T2 samples were stored (at -18 °C) for immunoglobulin (Ig) determination by electrophoresis. Differences between the results of refractometry and electrophoresis occurred in 27.8% of the colostrum analyses. Some serum IgG could be detected immediately post partum (T0) in 75% of the foals, and 42.82% of the newborn foals acquired a serum concentration of more than 800 mg/dl IgG within 8 h of birth. Compared to the electrophoresis, the glutaraldehyde test scored better (85%) than the enzyme immunoassay (74%), although both are accurate and safe to use since they clearly distinguish between safe and unsafe IgG concentrations.


Subject(s)
Blood Coagulation Tests/veterinary , Diagnostic Tests, Routine/veterinary , Electrophoresis/veterinary , Enzyme-Linked Immunosorbent Assay/veterinary , Refractometry/veterinary , Animals , Animals, Newborn , Blood Coagulation Tests/methods , Colostrum/chemistry , Diagnostic Tests, Routine/methods , Electrophoresis/methods , Enzyme-Linked Immunosorbent Assay/methods , Glutaral/chemistry , Horses , Immunoglobulin G/blood , Refractometry/methods , Reproducibility of Results
4.
Mater Sci Eng C Mater Biol Appl ; 93: 134-144, 2018 Dec 01.
Article in English | MEDLINE | ID: mdl-30274046

ABSTRACT

Lecithin is a mixture of phospholipids (PLs) that are found in living organisms. It gained the interest as a bio- and hemocompatible modifying agent for biomaterials. In this paper, we focused on the elaboration of a simple and well-described technology of metals coating with low-cost substance that could be useful in biomaterials industry. We studied the utility of lecithin suspension for stainless steel coating by electrophoretic deposition method. Our goal was to find a relationship between the conditions of lecithin suspension preparation, obtained suspension properties (vesicles size and structure, zeta potential, electrophoretic mobility) and lecithin coating features (topography, roughness). We found that final pH value, zeta potential and electrophoretic mobility of lecithin suspensions were not altered by initial solution pH value. However, the presence of hydrated Na+ ions forced forming of large multi-layered vesicles. We obtained uniform lecithin coatings with the use of electrophoretic deposition, which has a great potential to be used in a large scale.


Subject(s)
Coated Materials, Biocompatible/chemistry , Electrophoresis/methods , Lecithins/chemistry , Stainless Steel/chemistry
5.
Article in English | MEDLINE | ID: mdl-30230996

ABSTRACT

Square planar mononuclear platinum(II) complexes having general formula [Pt(Ln)Cl2], (where, Ln = L1-4) were synthesized with neutral bidentate heterocyclic 1,3,5-trisubstituted bipyrazole based ligands. The synthesized compounds were characterized by physicochemical method such as TGA, molar conductance, micro-elemental analysis and magnetic moment, and spectroscopic method such as, FT-IR, UV-vis, 1H NMR, 13C NMR and mass spectrometry. Biological applications of the compounds were carried out using in vitro brine shrimp lethality bioassay, in vitro antimicrobial study against five different pathogens, and cellular level cytotoxicity against Schizosaccharomyces pombe (S. Pombe) cells. Pt(II) complexes were tested for DNA interaction activities using electronic absorption titration, viscosity measurements study, fluorescence quenching technique and molecular docking assay. Binding constants (Kb) of ligands and complexes were observed in the range of 0.23-1.07 × 105 M-1 and 0.51-3.13 × 105 M-1, respectively. Pt(II) complexes (I-IV) display an excellent binding tendency to biomolecule (DNA) and possess comparatively high binding constant (Kb) values than the ligands. The DNA binding study indicate partial intercalative mode of binding in complex-DNA. The gel electrophoresis activity was carried out to examine DNA nuclease property of pUC19 plasmid DNA.


Subject(s)
Anti-Bacterial Agents/pharmacology , DNA/metabolism , Platinum Compounds/chemistry , Platinum Compounds/pharmacology , Animals , Anti-Bacterial Agents/chemistry , Artemia/drug effects , Chemistry Techniques, Synthetic , Cytotoxins/chemistry , Cytotoxins/pharmacology , Deoxyribonucleases/metabolism , Drug Evaluation, Preclinical/methods , Electrophoresis/methods , Magnetic Resonance Spectroscopy , Molecular Docking Simulation , Platinum Compounds/chemical synthesis , Schizosaccharomyces/drug effects , Spectrophotometry, Ultraviolet , Spectroscopy, Fourier Transform Infrared , Thermogravimetry
6.
J Biomed Mater Res A ; 106(7): 1916-1922, 2018 07.
Article in English | MEDLINE | ID: mdl-29532603

ABSTRACT

In this research work, hydroxyapatite/alumina/YSZ bio nanocomposite coatings on titanium substrate were created by electrophoretic deposition (EPD) and reaction bonding process. By using the EPD process, uniform green form coatings containing HA, yttria-stabilized zirconia (YSZ), and aluminum particles were produced on titanium. After oxidation of aluminum at 660°C and sintering at 850°C, a dense and adherent HA/Al2 O3 /YSZ coating was produced. Scanning electron microscopy, X-ray diffractometric and mechanical tests were employed to investigate the morphologies, compositions, hardness, toughness and bonding strength of the coatings. The corrosion studies and cell culturing experiment were carried out and the results show that the HA/YSZ/Al2 O3 coatings are more bioactive and more resistance to corrosion than HA coatings. © 2018 Wiley Periodicals, Inc. J Biomed Mater Res Part A: 106A: 1916-1922, 2018.


Subject(s)
Aluminum Oxide/chemistry , Coated Materials, Biocompatible/chemistry , Durapatite/chemistry , Electrochemistry/methods , Electrophoresis/methods , Nanocomposites/chemistry , Cell Line , Corrosion , Hardness , Humans , Microscopy, Atomic Force , Nanocomposites/ultrastructure , Osteoblasts/cytology , Osteoblasts/ultrastructure , X-Ray Diffraction
7.
Acta Chim Slov ; 65(1): 172-182, 2018 Mar.
Article in English | MEDLINE | ID: mdl-29562111

ABSTRACT

The hyperthermophilic archaeon Aeropyrum pernix has adapted to optimal growth under high temperatures in saline environments and under oxidizing conditions. In the present study, we focused on the antioxidative activity of proteins from A. pernix K1. Following high temperature methanol and water extractions of the protein from the biomass of A. pernix K1, the total sulphydryl groups and radical scavenging activities were investigated. The total protein in the methanolic extract was 36% lower and showed 10% fewer sulphydryl groups than that from the water extract. However, the radical scavenging activity of the water extract was four-fold greater than for the methanolic extract. The proteins of both of these extracts were separated by two-dimensional electrophoresis, and selected proteins were identified using mass spectrometry. The majority of these identified proteins were intracellular proteins, such as those involved in oxidative stress responses and osmotic stress responses, and proteins with hydrolase and dehydrogenase activities. These proteins are also common to most organisms, and included putative uncharacterized proteins.


Subject(s)
Aeropyrum/chemistry , Antioxidants/chemistry , Cell Extracts/chemistry , Amino Acid Sequence , Amino Acids/chemistry , Antioxidants/isolation & purification , Cell Extracts/isolation & purification , Computational Biology/methods , Drug Evaluation, Preclinical/methods , Electrophoresis/methods , Hydrolases/metabolism , Mass Spectrometry/methods , Methanol/chemistry , Molecular Structure , Oxidoreductases/metabolism , Structure-Activity Relationship , Water/chemistry
8.
Int Ophthalmol ; 38(6): 2563-2574, 2018 Dec.
Article in English | MEDLINE | ID: mdl-29170974

ABSTRACT

PURPOSE: In this study, by using a two-dimensional (2D) electrophoresis-based experimental approach, we aimed at understanding the nature of alkali injuries and the underlying mechanisms. A secondary aim was to compare the effects of cross-linking (CXL) and amnion membrane transplantation (AMT) on corneal protein compositions at the end of the early repair phase after injured with alkali. METHOD: The right corneas of 24 rabbits were injured with a 1 N solution of NaOH. Groups were formed based on the adjuvant therapies as (1) healthy group, (2) control group, (3) CXL group, (4) AMT group. In addition to the therapies, a conventional medical treatment was applied to all groups. Left eyes were used as within-subject healthy corneas (1). The corneas were excised at day 21, and a comparative proteomic analysis was performed using 2D gel electrophoresis coupled with MALDI-TOF/TOF. RESULT: 2D gel electrophoresis revealed the presence seven protein spots whose abundance changed among the groups. Those proteins were SH3 domain-binding protein, plant homeodomain finger protein 23, S100 calcium binding protein A-11(S100 A11), keratin type 2 cytoskeletal 1 and 2, transketolase and glyceraldehyde 3-phosphate dehydrogenase. Ingenuity pathway analysis predicted that the observed changes may be linked to a central metabolic pathway, transforming growth factor beta 1. Canonical pathway analysis focused our attention to two different pathways, namely nicotinamide adenine dinucleotide repair pathway and non-oxidative branch of pentose phosphate pathway. CONCLUSION: Our results shed some light onto the molecular mechanisms affected by alkali injury and adjuvant treatments. Further research is needed to propose medically significant target molecules that may be used for novel drug developments for alkali injury.


Subject(s)
Amnion/transplantation , Burns, Chemical/metabolism , Corneal Injuries/metabolism , Cross-Linking Reagents/therapeutic use , Eye Burns/chemically induced , Eye Proteins/metabolism , Proteomics/methods , Alkalies/adverse effects , Animals , Biomarkers/metabolism , Disease Models, Animal , Electrophoresis/methods , Eye Burns/metabolism , Female , Humans , Rabbits
9.
J Trace Elem Med Biol ; 50: 435-440, 2018 Dec.
Article in English | MEDLINE | ID: mdl-29066364

ABSTRACT

Mercury (Hg) is a hazardous chemical in the environment and can accumulate in the food chain. Selenium (Se) is a necessary element for human health and has antagonistic effects on Hg toxicity. In this work, we investigated the effect of Se on Hg containing and Hg-responsive proteins in rice using 1, 2-dimensional electrophoresis combined with SR-XRF techniques. Two weeks old rice seedlings were exposed to Hg and/or Se compounds. After 21days proteins in the rice roots were separated by electrophoresis and their metal contents were determined by X-ray fluorescence to identify Hg and Se responsive biomolecules. The results show that under Hg stress alone Hg is bound to proteins with molecular weights of 15-25kDa. With the addition of Se, a new Hg-containing protein band in the 55-70kDa range was also found, while the content of Hg in the 15-25kDa proteins decreased. Ten and nine new protein spots were identified after adding Se to inorganic Hg and methylmercury exposed roots, respectively. Adding Se regulates the abundance of proteins associated with carbohydrate and energy metabolism, stress response, cell cycle, and DNA replication indicating that these proteins mediate the antagonism of Se against Hg toxicity. This study helps us to better understand the molecular mechanism of Hg tolerance as well as the molecular antagonism between Hg and Se in rice plants.


Subject(s)
Electrophoresis/methods , Mercury/metabolism , Oryza/metabolism , Selenium/metabolism , Environmental Monitoring
10.
J Chromatogr A ; 1501: 151-160, 2017 Jun 09.
Article in English | MEDLINE | ID: mdl-28434715

ABSTRACT

The continuous separation of different types of droplets from a mixture is important in industrial and research applications. Currently researches for droplet separation focus on homogeneous emulsion droplets, and there is no study on the separation of heterogeneous droplets. The wall-induced dielectrophoresis, which originates from the non-uniform electrical field around a sphere nearby a planar wall, can be applied to separate dielectric particle and cells. In this work, the continuous separations of oil droplets and the electrically induced Janus droplets (EIJDs) in a microchannel by using the wall-induced dielectrophoresis method were presented. The wall-induced dielectrophoretic lateral migration of a droplet depends on the size and surface charge of the droplet. In this study, the wall-induced dielectrophoretic lateral migrations of oil droplets and Janus droplets in a straight microchannel under different strengths of electrical fields were investigated first, and the experimental results match well with the theoretical predictions. Then, the separations of oil droplets by size, separations of Janus droplets by size, and separation of mixtures of Janus droplets and oil droplets with the same size were conducted, respectively. The experimental results demonstrate that, with this method, the separations of target oil droplets or Janus droplets with specific size can be accomplished by simply adjusting the voltages applied to the microchannel.


Subject(s)
Electrophoresis/methods , Plant Oils/chemistry , Electricity , Emulsions/chemistry , Nanoparticles/chemistry , Rapeseed Oil
11.
Sci Rep ; 7: 40433, 2017 01 13.
Article in English | MEDLINE | ID: mdl-28084413

ABSTRACT

The delivery of tracers into populations of neurons is essential to visualize their anatomy and analyze their function. In some model systems genetically-targeted expression of fluorescent proteins is the method of choice; however, these genetic tools are not available for most organisms and alternative labeling methods are very limited. Here we describe a new method for neuronal labelling by electrophoretic dye delivery from a suction electrode directly through the neuronal sheath of nerves and ganglia in insects. Polar tracer molecules were delivered into the locust auditory nerve without destroying its function, simultaneously staining peripheral sensory structures and central axonal projections. Local neuron populations could be labelled directly through the surface of the brain, and in-vivo optical imaging of sound-evoked activity was achieved through the electrophoretic delivery of calcium indicators. The method provides a new tool for studying how stimuli are processed in peripheral and central sensory pathways and is a significant advance for the study of nervous systems in non-model organisms.


Subject(s)
Electrophoresis/methods , Fluorescent Dyes/chemistry , Nerve Tissue/anatomy & histology , Nerve Tissue/physiology , Neuroimaging/methods , Neurons/metabolism , Acoustic Stimulation , Animals , Brain , Gryllidae/physiology , Sound , Staining and Labeling
12.
J Proteomics ; 150: 268-280, 2017 01 06.
Article in English | MEDLINE | ID: mdl-27671789

ABSTRACT

SUMOylation is a post-translational modification which regulates a number of critical biological processes in, for example mammals, yeast and plants. In order to fully understand the functional effects of SUMOylation an essential first step is the identification of endogenous targets for SUMOylation. Here we report the results of using a recently developed proteomic approach based on the use of 3D gels to identify the endogenous SUMO targets in leaves of Solanum tuberosum. By using 3D gels we avoid the problem of co-migration of proteins, which is a major limitation of 2D gels, and we enable the use of the highly sensitive CyDye DIGE fluor saturation dyes. Using this new method we have identified 39 individual proteins as probable SUMO targets in leaves of Solanum tuberosum. The advantages of this method compared with other approaches are discussed, and possible future developments are outlined. SIGNIFICANCE: The authors have no conflicts of interest to declare. All authors have approved the manuscript and agree with submission to Journal of Proteomics.


Subject(s)
Plant Leaves/metabolism , Plant Proteins/metabolism , Protein Processing, Post-Translational , Proteomics/methods , Solanum tuberosum/metabolism , Sumoylation , Electrophoresis/methods , Plant Proteins/analysis , Solanum tuberosum/chemistry , Tandem Mass Spectrometry
13.
Electrophoresis ; 37(20): 2644-2648, 2016 10.
Article in English | MEDLINE | ID: mdl-27440471

ABSTRACT

Zymography is a powerful technique to separate and identify different enzymatic activities on a standard acrylamide gel. For oxidation prone enzymes such as cysteine proteases however, the oxidizing species generated by electrolysis of the gel running buffer may result in partial or complete inactivation, thus compromising the final readout. This can be only partially remedied by subsequent treatment of the gel with reducing agents. We demonstrate the generation of reactive oxidizing species during electrophoresis and discovered that supplementation of the gel running buffer with a minimum of 5 mM cysteine prevents enzyme inactivation and allows retention of proteolytic activity as measured by zymography on model substrate N α-benzoyl-l-arginine p-nitroanilide, without at the same time altering the mobilities of the gel proteins.


Subject(s)
Cysteine Proteases/chemistry , Cysteine Proteases/metabolism , Cysteine/chemistry , Electrophoresis/methods , Benzoylarginine Nitroanilide/analysis , Benzoylarginine Nitroanilide/chemistry , Benzoylarginine Nitroanilide/metabolism , Buffers , Cysteine/metabolism , Models, Chemical , Reactive Oxygen Species/chemistry , Reactive Oxygen Species/metabolism
14.
Braz. j. pharm. sci ; 52(1): 125-135, Jan.-Mar. 2016. tab, graf
Article in English | LILACS | ID: lil-789086

ABSTRACT

ABSTRACT The practice of immersion in burn patient has been abandoned in many parts of the world but in Brazil it is still common. The aim of this study was to ascertain if balneotherapy is a risk factor for Pseudomonas aeruginosa colonization in thermally injured patients. Eighteen patients from a Burn Center were studied for 14 weeks for Pseudomonas aeruginosa. Samples were collected by swabbing the exudate of wounds, before and after giving bath to the patients and from balneotherapy table. Pulsed-field gel electrophoresis was used to determine bacterial genetic relatedness. Thirty-seven P. aeruginosa isolates were detected from 292 swabs collected from patients' burn surface area and from the balneotherapy table. Profile analysis of P. aeruginosa DNA fragmentation showed 10 clones among the 37 strains analyzed. Type A is the most prevalent clone, with 23 strains distributed into eight subtypes. These were present in the swabs collected, before and after the patients' bath, from the surface of the bath table, suggesting that there was cross-contamination between the patients in different ways. This work demonstrates that balneotherapy is a risk factor in the Burn Center studied, because the same clone was found among P. aeruginosa isolates collected at various points and times.


RESUMO A prática de balneotarapia em paciente queimado foi abandonada em muitas partes do mundo, mas no Brasil ainda é comum. O objetivo deste estudo foi verificar se a balneoterapia é um fator de risco para a colonização por Pseudomonas aeruginosa em pacientes queimados. Dezoito pacientes internados em um Centro de Queimadura (CQ) foram acompanhados por 14 semanas. Amostras foram coletadas do exsudato de feridas, antes e depois do banho dos pacientes e também da mesa onde a balneoterapia foi realizada. A relação genética entre as cepas de P. aeruginosa foi determinada pela electroforese em gel de campo pulsado. Trinta e sete cepas foram detectadas a partir de 292 swabs coletados de área de superfície das feridas dos pacientes e da mesa de balneoterapia. Análise de fragmentação do DNA das 37 P. aeruginosa mostrou a existência de 10 clones. O tipo A foi o clone mais prevalente, com 23 cepas distribuídas em oito subtipos. Estas estavam presentes nas lesões dos pacientes antes e após o banho e na mesa onde o banho foi realizado, sugerindo contaminação cruzada inter e intra-pacientes e pacientes e mesa de banho. Este trabalho mostra que a balneoterapia é um fator de risco para colonização por P. aeruginosa, no CQ estudado, pois um mesmo clone da bactéria foi encontrado nos isolados coletados em vários pontos e épocas diferentes.


Subject(s)
Humans , Pseudomonas aeruginosa/pathogenicity , Balneology/methods , Risk Factors , Burns/complications , Electrophoresis/methods
15.
Biotechniques ; 58(6): 293-300, 2015 Jun.
Article in English | MEDLINE | ID: mdl-26054765

ABSTRACT

The unique DNA packaging of spermatozoa renders them resistant to DNA isolation techniques used for somatic cells, requiring alternative methods that are slow and labor intensive. Here we present a rapid method for isolating high-quality sperm DNA. Isolated human sperm cells were homogenized with 0.2 mm steel beads for 5 min at room temperature in the presence of guanidine thiocyanate lysis buffer supplemented with 50 mM tris(2-carboxyethyl)phosphine (TCEP). Our method yielded >90% high-quality DNA using 3 different commercially available silica-based spin columns. DNA yields did not differ between immediate isolation (2.84 ± 0.04 pg/cell) and isolation after 2 weeks of homogenate storage at room temperature (2.91 ± 0.13 pg/cell). DNA methylation analyses revealed similar methylation levels at both time points for three imprinted loci. Our protocol has many advantages: it is conducted at room temperature; lengthy proteinase K (ProK) digestions are eliminated; the reducing agent, TCEP, is odorless and stable at room temperature; nucleic acids are stabilized, allowing storage of homogenate; and it is adaptable for other mammalian species. Taken together, the benefits of our improved method have important implications for settings where sample processing constraints exist.


Subject(s)
DNA/isolation & purification , Spermatozoa/chemistry , Animals , Cell Separation , DNA/chemistry , DNA Methylation , Electrophoresis/methods , Humans , Male , Phosphines/chemistry , Reducing Agents/chemistry , Silicon Dioxide/chemistry
16.
Talanta ; 139: 233-46, 2015 Jul 01.
Article in English | MEDLINE | ID: mdl-25882431

ABSTRACT

The aim of the present study was to compare the polyphenolic compositions of 47 medicinal herbs (HM) and four herbal tea mixtures from Central Estonia by rapid, reliable and sensitive Spectral Fluorescence Signature (SFS) method in a front face mode. The SFS method was validated for the main identified HM representatives including detection limits (0.037mgL(-1) for catechin, 0.052mgL(-1) for protocatechuic acid, 0.136mgL(-1) for chlorogenic acid, 0.058mgL(-1) for syringic acid and 0.256mgL(-1) for ferulic acid), linearity (up to 5.0-15mgL(-1)), intra-day precision (RSDs=6.6-10.6%), inter-day precision (RSDs=6.4-13.8%), matrix effect (-15.8 to +5.5) and recovery (85-107%). The phytochemical fingerprints were differentiated by parallel factor analysis (PARAFAC) combined with hierarchical cluster analysis (CA) and principal component analysis (PCA). HM were clustered into four main clusters (catechin-like, hydroxycinnamic acid-like, dihydrobenzoic acid-like derivatives containing HM and HM with low/very low content of fluorescent constituents) and 14 subclusters (rich, medium, low/very low contents). The average accuracy and precision of CA for validation HM set were 97.4% (within 85.2-100%) and 89.6%, (within 66.7-100%), respectively. PARAFAC-PCA/CA has improved the analysis of HM by the SFS method. The results were verified by two separation methods CE-DAD and HPLC-DAD-MS also combined with PARAFAC-PCA/CA. The SFS-PARAFAC-PCA/CA method has potential as a rapid and reliable tool for investigating the fingerprints and predicting the composition of HM or evaluating the quality and authenticity of different standardised formulas. Moreover, SFS-PARAFAC-PCA/CA can be implemented as a laboratory and/or an onsite method.


Subject(s)
Chromatography, High Pressure Liquid/methods , Electrophoresis/methods , Herbal Medicine , Mass Spectrometry/methods , Plant Extracts/analysis , Polyphenols/analysis , Spectrometry, Fluorescence/methods , Cluster Analysis , Principal Component Analysis
17.
Biochem Pharmacol ; 91(3): 293-300, 2014 Oct 01.
Article in English | MEDLINE | ID: mdl-25124703

ABSTRACT

Homologous Recombination (HR) plays an essential role in cellular proliferation and in maintaining genomic stability by repairing DNA double-stranded breaks that appear during replication. Rad51, a key protein of HR in eukaryotes, can have an elevated expression level in tumor cells, which correlates with their resistance to anticancer therapies. Therefore, targeted inhibition of Rad51 through inhibitor may improve the tumor response to these therapies. In order to identify small molecules that inhibit Rad51 activity, we screened the Prestwick Library (1120 molecules) for their effect on the strand exchange reaction catalyzed by Rad51. We found that Chicago Sky Blue (CSB) is a potent inhibitor of Rad51, showing IC50 values in the low nanomolar range (400 nM). Biochemical analysis demonstrated that the inhibitory mechanism probably occurs by disrupting the Rad51 association with the single-stranded DNA, which prevents the nucleoprotein filament formation, the first step of the protein activity. Structure Activity Relationship analysis with a number of compounds that shared structure homology with CSB was also performed. The sensitivity of Rad51 inhibition to CSB modifications suggests specific interactions between the molecule and Rad51 nucleofilament. CSB and some of its analogs open up new perspectives in the search for agents capable of potentiating chemo- and radio-therapy treatments for cancer. Moreover, these compounds may be excellent tools to analyze Rad51 cellular functions. Our study also highlights how CSB and its analogs, which are frequently used in colorants, stains and markers, could be responsible of unwanted side effects by perturbing the DNA repair process.


Subject(s)
Rad51 Recombinase/antagonists & inhibitors , Small Molecule Libraries/pharmacology , Adenosine Triphosphate/metabolism , DNA Repair/drug effects , DNA, Single-Stranded/metabolism , Drug Evaluation, Preclinical/methods , Electrophoresis/methods , Electrophoresis, Gel, Two-Dimensional , Homologous Recombination/drug effects , Humans , Inhibitory Concentration 50 , Small Molecule Libraries/chemistry , Structure-Activity Relationship , Trypan Blue/pharmacology
18.
Biosens Bioelectron ; 59: 166-73, 2014 Sep 15.
Article in English | MEDLINE | ID: mdl-24727602

ABSTRACT

We propose a novel application of dielectrophoresis (DEP) to make three-dimensional (3D) methacrylated gelatin (GelMA) hydrogels with gradients of micro- and nanoparticles. DEP forces were able to manipulate micro- and nanoparticles of different sizes and materials (i.e., C2C12 myoblasts, polystyrene beads, gold microparticles, and carbon nanotubes) within GelMA hydrogels in a rapid and facile way and create 3D gradients of these particles in a microchamber. Immobilization of drugs, such as fluorescein isothiocyanate-dextran (FITC-dextran) and 6-hydroxydopamine (6-OHDA), on gold microparticles allowed us to investigate the high-throughput release of these drugs from GelMA-gold microparticle gradient systems. The latter gradient constructs were incubated with C2C12 myoblasts for 24h to examine the cell viability through the release of 6-OHDA. The drug was released from the microparticles in a gradient manner, inducing a cell viability gradient. This novel approach to create 3D chemical gradients within hydrogels is scalable to any arbitrary length scale. It is useful for making anisotropic biomimetic materials and high-throughput platforms to investigate cell-microenvironment interactions in a rapid, simple, cost-effective, and reproducible manner.


Subject(s)
Drug Evaluation, Preclinical/methods , High-Throughput Screening Assays/methods , Hydrogels/chemistry , Animals , Biosensing Techniques/methods , Cell Survival/drug effects , Dextrans/chemistry , Electrophoresis/methods , Fluorescein-5-isothiocyanate/analogs & derivatives , Fluorescein-5-isothiocyanate/chemistry , Mice , Oxidopamine/chemistry , Oxidopamine/pharmacology , Sympatholytics/chemistry , Sympatholytics/pharmacology
19.
Ann Bot ; 112(3): 503-13, 2013 Aug.
Article in English | MEDLINE | ID: mdl-23712452

ABSTRACT

BACKGROUND AND AIMS: Cell wall pectins and arabinogalactan proteins (AGPs) are important for pollen tube growth. The aim of this work was to study the temporal and spatial dynamics of these compounds in olive pollen during germination. METHODS: Immunoblot profiling analyses combined with confocal and transmission electron microscopy immunocytochemical detection techniques were carried out using four anti-pectin (JIM7, JIM5, LM5 and LM6) and two anti-AGP (JIM13 and JIM14) monoclonal antibodies. KEY RESULTS: Pectin and AGP levels increased during olive pollen in vitro germination. (1 → 4)-ß-d-Galactans localized in the cytoplasm of the vegetative cell, the pollen wall and the apertural intine. After the pollen tube emerged, galactans localized in the pollen tube wall, particularly at the tip, and formed a collar-like structure around the germinative aperture. (1 → 5)-α-l-Arabinans were mainly present in the pollen tube cell wall, forming characteristic ring-shaped deposits at regular intervals in the sub-apical zone. As expected, the pollen tube wall was rich in highly esterified pectic compounds at the apex, while the cell wall mainly contained de-esterified pectins in the shank. The wall of the generative cell was specifically labelled with arabinans, highly methyl-esterified homogalacturonans and JIM13 epitopes. In addition, the extracellular material that coated the outer exine layer was rich in arabinans, de-esterified pectins and JIM13 epitopes. CONCLUSIONS: Pectins and AGPs are newly synthesized in the pollen tube during pollen germination. The synthesis and secretion of these compounds are temporally and spatially regulated. Galactans might provide mechanical stability to the pollen tube, reinforcing those regions that are particularly sensitive to tension stress (the pollen tube-pollen grain joint site) and mechanical damage (the tip). Arabinans and AGPs might be important in recognition and adhesion phenomena of the pollen tube and the stylar transmitting cells, as well as the egg and sperm cells.


Subject(s)
Galactans/metabolism , Germination , Olea/metabolism , Pectins/metabolism , Electrophoresis/methods , Immunohistochemistry/methods , Microscopy, Electron, Transmission , Olea/physiology , Olea/ultrastructure , Pollen Tube/growth & development , Pollen Tube/metabolism , Pollen Tube/ultrastructure
20.
J. investig. allergol. clin. immunol ; 23(3): 168-175, mayo-jun. 2013. tab, ilus
Article in English | IBECS | ID: ibc-114860

ABSTRACT

Antecedentes: El polen de la morera del papel se considera uno de los aeroalérgenos más relevantes en Pakistán, cuyas propiedades alergénicas no han sido estudiadas hasta el momento actual. Objetivo: El objetivo de este estudio fue caracterizar el perfil de sensibilización de los pacientes alérgicos a las proteínas de este polen que contribuye a la polinosis en Pakistán. Métodos: La extracción de las proteínas de este polen fue realizada mediante diferentes protocolos. La unión de la IgE a proteínas del polen de la morera del papel, perteneciente a la familia de las moráceas fue determinada mediante InmunoCAP e Inmunoblotting utilizando suero de 29 pacientes alérgicos a este polen con prueba cutánea positiva. Se realizó test de liberación de histamina in vitro para determinar la potencia alergénica de los extractos de polen y de un alérgeno parcialmente purificado. Se secuenciaron la N-terminal y MALDI-TOF/TOF para identificar la proteína. Resultados: En cuanto a los resultados obtenidos se confirmó la sensibilización a dicho polen mediante ImmunoCAP frente a polen de Morus alba en 23 de los 29 pacientes alérgicos al polen de morera del papel. Una proteína de 10 kDa del extracto de dicho polen se consideró como el alérgeno mayor sobre el resto de las proteínas reactivas a la IgE. El suero del 79% de los pacientes reaccionó con este alérgeno de 10 kDa, el cual mostró capacidad para liberar histamina in vitro en 3 de 4 pacientes. La secuenciación N-terminal y MALDI-TOF/TOF arrojó una secuencia de aminoácidos con ausencia de homología con otras proteínas conocidas. Conclusiones: En conclusión, los pacientes alérgicos al polen de morera del papel están sensibilizados a múltiples alérgenos de este polen. Se identifica una nueva proteína de 10 kDa como alérgeno mayoritario que deberá ser investigado con fines diagnósticos y terapéuticos (AU)


Background: Paper mulberry (Morus papyrifera) pollen is considered to be one of the most clinically relevant aeroallergens in Pakistan. To date, the allergenicity of the pollen has not been investigated. Objective: To characterize the sensitization profile of mulberry-allergic patients and the proteins of paper mulberry pollen contributing to pollinosis in the Pakistani population. Methods: Proteins were extracted from mulberry pollen using different protocols. Immunoglobulin (Ig) E binding proteins to mulberry pollen was determined by ImmunoCAP testing and immunoblotting using sera from 29 mulberry pollen–allergic patients with positive skin prick test results to mulberry pollen antigens. The histamine release assay was performed in vitro to determine the allergenic potency of pollen extracts and a partially purified mulberry pollen allergen. The protein was identified using N-terminal sequencing and matrix-assisted laser desorption/ionization–time of flight spectrometry (MALDI-TOF/TOF). Results: IgE sensitization to mulberry pollen was confirmed by positive ImmunoCAP results to pollen from Morus alba (white mulberry) in 23 out of 29 mulberry pollen–allergic patients. A 10-kDa protein from the paper mulberry pollen extract was considered a major allergen, along with additional IgE-reactive proteins. Sera from 79% of the patients reacted to the 10-kDa allergen, which showed substantial capacity to trigger histamine release in 3 out of 4 patients. N-terminal sequencing and MALDI-TOF/TOF yielded an amino acid sequence with no homology to known proteins. Conclusions: Mulberry-allergic patients are sensitized to multiple mulberry pollen allergens. We identified a novel 10-kDa protein that was a major allergen and should be further investigated for diagnostic and therapeutic purposes (AU)


Subject(s)
Humans , Male , Female , Adult , Middle Aged , Immunoglobulin E , Immunoglobulin E , Immunoglobulin E/isolation & purification , Histamine Release , Histamine Release/immunology , Histamine Release/physiology , Blotting, Western/methods , Blotting, Western , Morus/adverse effects , Pollen/adverse effects , Allergens , Blood Protein Electrophoresis , Electrophoresis/methods , Mass Spectrometry/instrumentation , Mass Spectrometry/methods , Mass Spectrometry
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