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1.
CRISPR J ; 4(2): 191-206, 2021 04.
Article in English | MEDLINE | ID: mdl-33876953

ABSTRACT

X-linked agammaglobulinemia (XLA) is a monogenic primary immune deficiency characterized by very low levels of immunoglobulins and greatly increased risks for recurrent and severe infections. Patients with XLA have a loss-of-function mutation in the Bruton's tyrosine kinase (BTK) gene and fail to produce mature B lymphocytes. Gene editing in the hematopoietic stem cells of XLA patients to correct or replace the defective gene should restore B cell development and the humoral immune response. We used the clustered regularly interspaced short palindromic repeats (CRISPR)-Cas9 platform to precisely target integration of a corrective, codon-optimized BTK complementary DNA (cDNA) cassette into its endogenous locus. This process is driven by homologous recombination and should place the transgenic BTK under transcriptional control of its endogenous regulatory elements. Each integrated copy of this cDNA in BTK-deficient K562 cells produced only 11% as much BTK protein as the wild-type gene. The donor cDNA was modified to include the terminal intron of the BTK gene. Successful integration of the intron-containing BTK donor led to a nearly twofold increase in BTK expression per cell over the base donor. However, this donor variant was too large to package into an adeno-associated viral vector for delivery into primary cells. Donors containing truncated variants of the terminal intron also produced elevated expression, although to a lesser degree than the full intron. Addition of the Woodchuck hepatitis virus posttranscriptional regulatory element led to a large boost in BTK transgene expression. Combining these modifications led to a BTK donor template that generated nearly physiological levels of BTK expression in cell lines. These reagents were then optimized to maximize integration rates into human hematopoietic stem and progenitor cells, which have reached potentially therapeutic levels in vitro. The novel donor modifications support effective gene therapy for XLA and will likely assist in the development of other gene editing-based therapies for genetic disorders.


Subject(s)
Agammaglobulinaemia Tyrosine Kinase/genetics , Agammaglobulinemia/genetics , Agammaglobulinemia/therapy , CRISPR-Cas Systems , Gene Editing/methods , Genetic Diseases, X-Linked/genetics , Genetic Diseases, X-Linked/therapy , Genetic Therapy , Agammaglobulinaemia Tyrosine Kinase/deficiency , Agammaglobulinaemia Tyrosine Kinase/metabolism , B-Lymphocytes , Codon , DNA, Complementary/genetics , Genetic Loci , Humans , Introns , K562 Cells , Mutation , Organisms, Genetically Modified
2.
FASEB J ; 35(2): e21176, 2021 02.
Article in English | MEDLINE | ID: mdl-33184899

ABSTRACT

The mitochondrial inner membrane glycerophospholipid cardiolipin (CL) associates with mitochondrial proteins to regulate their activities and facilitate protein complex and supercomplex formation. Loss of CL leads to destabilized respiratory complexes and mitochondrial dysfunction. The role of CL in an organism lacking a conventional electron transport chain (ETC) has not been elucidated. Trypanosoma brucei bloodstream forms use an unconventional ETC composed of glycerol-3-phosphate dehydrogenase and alternative oxidase (AOX), while the mitochondrial membrane potential (ΔΨm) is generated by the hydrolytic action of the Fo F1 -ATP synthase (aka Fo F1 -ATPase). We now report that the inducible depletion of cardiolipin synthase (TbCls) is essential for survival of T brucei bloodstream forms. Loss of CL caused a rapid drop in ATP levels and a decline in the ΔΨm. Unbiased proteomic analyses revealed a reduction in the levels of many mitochondrial proteins, most notably of Fo F1 -ATPase subunits and AOX, resulting in a strong decline of glycerol-3-phosphate-stimulated oxygen consumption. The changes in cellular respiration preceded the observed decrease in Fo F1 -ATPase stability, suggesting that the AOX-mediated ETC is the first pathway responding to the decline in CL. Select proteins and pathways involved in glucose and amino acid metabolism were upregulated to counteract the CL depletion-induced drop in cellular ATP.


Subject(s)
Cardiolipins/genetics , Energy Metabolism/genetics , Gene Knockout Techniques , Trypanosoma brucei brucei/genetics , Trypanosoma brucei brucei/metabolism , Adenosine Triphosphate/metabolism , Cardiolipins/metabolism , Electron Transport Chain Complex Proteins/metabolism , Glycerolphosphate Dehydrogenase/metabolism , Membrane Potential, Mitochondrial/genetics , Membrane Proteins/genetics , Membrane Proteins/metabolism , Mitochondria/metabolism , Mitochondrial Membranes/metabolism , Mitochondrial Proteins/metabolism , Organisms, Genetically Modified , Oxidoreductases/metabolism , Oxygen Consumption/genetics , Plant Proteins/metabolism , Proteome , Proteomics , Protozoan Proteins/genetics , Protozoan Proteins/metabolism , Transferases (Other Substituted Phosphate Groups)/genetics , Transferases (Other Substituted Phosphate Groups)/metabolism , Trypanosoma brucei brucei/classification
3.
Chin J Nat Med ; 18(12): 952-956, 2020 Dec.
Article in English | MEDLINE | ID: mdl-33357726

ABSTRACT

Constitutively expression of the pathway-specific activators is an effective method to activate silent gene clusters and improve natural product production. In this study, nine shunt products of aminoansamycins (1-9) were identified from a recombinant mutant strain S35-LAL by overexpressed the large-ATP-binding regulator of the LuxR family (LAL) gene aas1 in Streptomyces sp. S35. All the compounds showed no anti-microbial, anti-T3SS and cytotoxic activities.


Subject(s)
Biological Products/metabolism , Lactams, Macrocyclic/metabolism , Multigene Family , Streptomyces/genetics , Organisms, Genetically Modified , Streptomyces/metabolism
4.
Carbohydr Polym ; 245: 116486, 2020 Oct 01.
Article in English | MEDLINE | ID: mdl-32718606

ABSTRACT

Curdlan is a bacterial, water-insoluble, linear homopolysaccharide that has been widely used in the food industry. In this study, genome information of strain CGMCC 11546, a UV-induced high-yield mutant of the model curdlan-producing strain Agrobacterium sp. ATCC 31749, was used to investigate the molecular mechanism of curdlan biosynthesis. The maximum curdlan yield of 47.97 ± 0.57 g/L was obtained from strain CGMCC 11546 by using optimal media containing 60 g/L sucrose, 6 g/L yeast, 2 g/L KH2PO4, 0.4 g/L MgSO4·7H2O, 2 g/L CaCO3, 0.1 g/L FeSO4·7H2O, 0.04 g/L MnSO4, and 0.02 g/L ZnCl2 at 30 °C and 280 rpm after 96 h of fermentation. The gel strength of curdlan was improved by 41 % by knocking out the ß-1,3-glucanase genes exoK and exsH of strain CGMCC 11546. Furthermore, the application of curdlan from the ΔexoK-exsH strain in noodles significantly improved the eating quality of both raw and cooked noodles.


Subject(s)
Agrobacterium/enzymology , Agrobacterium/genetics , Genome, Bacterial , Polysaccharides, Bacterial/metabolism , beta-Glucans/metabolism , Agrobacterium/radiation effects , Bacterial Proteins/genetics , Culture Media/chemistry , Dietary Supplements , Fermentation , Food Quality , Gels/chemistry , Gene Deletion , Glucan 1,3-beta-Glucosidase/genetics , Molecular Weight , Organisms, Genetically Modified , Ultraviolet Rays , Whole Genome Sequencing/methods
5.
Microbiol Res ; 236: 126455, 2020 Jun.
Article in English | MEDLINE | ID: mdl-32179389

ABSTRACT

Echinenone and canthaxanthin are important carotenoid pigments with food and industrial applications. Biosynthesis of echinenone and/or canthaxanthin is catalyzed by ß-carotene ketolase (CrtO), with ß-carotene as the substrate. In this study, we generated transgenic Nostoc sp. PCC 7120 overexpressing a heterologous crtO gene from Nostoc flagelliforme and evaluated the productivity of both pigments. Normal (BG11 medium, 30 °C) and osmotic stress (BG11 medium supplemented with 0.4 M mannitol, 30 °C) conditions were used for cultivation. As compared to control strain, production of echinenone and canthaxanthin in transgenic strain were respectively increased by more than 16 % and 80 %, under either normal or osmotic stress conditions. Especially upon the stress condition, higher proportion of echinenone and canthaxanthin in total pigments was achieved, which should be beneficial for downstream separation and purification. In addition, transgenic strain showed drought tolerance and could revive from desiccation treatment after rewetting. Thus, this study provided technical clues for production of both pigments in engineered cyanobacteria as well as for cyanobacterial anhydrobiotic engineering.


Subject(s)
Nostoc/genetics , Organisms, Genetically Modified/growth & development , Organisms, Genetically Modified/metabolism , Oxygenases/genetics , Adaptation, Physiological , Bacterial Proteins/genetics , Canthaxanthin/biosynthesis , Carotenoids/metabolism , Cloning, Molecular , Droughts , Genes, Bacterial , Metabolic Engineering/methods , Nostoc/growth & development , Nostoc/metabolism , Organisms, Genetically Modified/genetics , Oxygenases/metabolism , beta Carotene/biosynthesis
6.
Mol Biol Rep ; 47(1): 33-43, 2020 Jan.
Article in English | MEDLINE | ID: mdl-31612412

ABSTRACT

Aging is a degenerative process characterized by progressive deterioration of cellular components, ultimately resulting in mortality, in which massive accumulation of reactive oxygen species (ROS) and advanced glycation end products (AGEs) are implicated as crucial factors. At the same time, natural products are rich sources from which to isolate and characterize potential anti-aging compounds. The current study was designed to extract compounds from the marine bacterium Pseudomonas sp. and investigate their in vitro antioxidant and anti-glycation activities, as well as their in vivo effects on aging in the model organism Schizosaccharomyces pombe. In vitro assays showed that a Pseudomonas sp. PTR-08 extract exhibited the best antioxidant and anti-glycation activities. Further, direct administration of the extract significantly increased yeast longevity, accompanied by induction of the yeast oxidative stress response. Molecular analyses indicated that selected extract dramatically up-regulated the expression of pap1+, which encodes the transcriptional factor Pap1 and ctt1+, which encodes catalase, following H2O2 treatment. In line with these results, catalase activity significantly increased, leading to a decrease in intracellular ROS. In addition, this extract may delay the G1 phase of the yeast cell cycle, leading to an extended lifespan. Moreover, our findings indicated that the extract contains pyrrolo[1,2-a]pyrazine-1,4-dione, hexahydro-, which substantially promotes anti-aging activity in yeast. However, further research must be conducted to better understand the role of this compound in our system.


Subject(s)
Antioxidants/isolation & purification , Antioxidants/pharmacology , Cell Cycle/drug effects , Cellular Senescence/drug effects , Pseudomonas/chemistry , Schizosaccharomyces/drug effects , Aquatic Organisms , Basic-Leucine Zipper Transcription Factors/genetics , Basic-Leucine Zipper Transcription Factors/metabolism , Catalase/genetics , Catalase/metabolism , Cell Cycle/genetics , Drug Evaluation, Preclinical , Gene Expression Regulation, Fungal/drug effects , Longevity/drug effects , Longevity/genetics , Organisms, Genetically Modified , Oxidative Stress/drug effects , Oxidative Stress/genetics , Reactive Oxygen Species/metabolism , Schizosaccharomyces/cytology , Schizosaccharomyces/physiology , Schizosaccharomyces pombe Proteins/genetics , Schizosaccharomyces pombe Proteins/metabolism , Signal Transduction/drug effects , Signal Transduction/genetics
7.
J Biosci Bioeng ; 127(4): 451-457, 2019 Apr.
Article in English | MEDLINE | ID: mdl-30327168

ABSTRACT

Free dihomo-γ-linolenic acid (DGLA) and its desaturated form, free arachidonic acid (ARA) are polyunsaturated free fatty acids (FFAs). They are useful raw materials to produce eicosanoid pharmaceuticals. In this study, we aimed at their production by the oleaginous filamentous fungus Aspergillus oryzae via metabolic engineering. Three genes encoding enzymes involved in the synthesis of DGLA and ARA, were isolated from the filamentous fungus Mortierella alpina that produces ARA in a triacylglycerol form. These genes were concatenated to promoters and terminators of highly expressed genes of A. oryzae, and the concatenated DNA fragments were further concatenated with each other to generate a single DNA fragment in the form of a biosynthetic gene cluster. By homologous recombination, the resulting DNA fragment was integrated to the chromosome of the A. oryzae acyl-CoA synthetase gene disruptant whose FFA productivity was enhanced at 9.2-fold more than the wild-type strain. The DNA-integrated disruptant produced free DGLA but did not produce free ARA. Thus, focusing on free DGLA, after removal of the gene for converting DGLA to ARA, the constructed strain produced free DGLA at 145 mg/l for 5 d. Also, by supplementing Triton X-100 surfactant at 1% to the culture, over 80% of free DGLA was released from cells without inhibiting the growth. Consequently, the constructed strain will be useful for attempting production of free DGLA-derived eicosanoids because it bypasses excision of free DGLA from triacylglycerols by lipase. To our knowledge, this is the first report on microbial production of free DGLA and its extracellular release.


Subject(s)
8,11,14-Eicosatrienoic Acid/metabolism , Aspergillus oryzae , Secretory Pathway/drug effects , Surface-Active Agents/pharmacology , Arachidonic Acid/metabolism , Aspergillus oryzae/drug effects , Aspergillus oryzae/genetics , Aspergillus oryzae/metabolism , Extracellular Space , Fatty Acids, Unsaturated/metabolism , Gene Expression Regulation, Enzymologic , Gene Expression Regulation, Fungal , Metabolic Engineering/methods , Mortierella/enzymology , Mortierella/genetics , Octoxynol/pharmacology , Organisms, Genetically Modified , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Secretory Pathway/genetics
8.
J Biosci Bioeng ; 127(4): 418-424, 2019 Apr.
Article in English | MEDLINE | ID: mdl-30344018

ABSTRACT

l-Asparaginase (ASN; EC 3.5.1.1) shows great commercial value because of its ability to reduce toxic levels of acrylamide in foods. To achieve high-efficiency production of l-asparaginase, an open reading frame of 978 bp encoding asparaginase (BcA) was amplified from Bacillus cereus BDRD-ST26, followed by its expression in Bacillus subtilis WB600, with the highest yield of 374.9 U/ml obtained using an amyE-signal peptide. A four-step purification protocol was used to purify BcA, resulting in a 15.1-fold increase in purification yield, with a specific activity of purified BcA at 550.8 U/mg and accompanied by detection of minimal l-glutaminase activity. Maximum BcA activity was detected at 50°C and pH 9.0 in 20 mM Tris-HCl buffer, with a half-life at 50°C of 17.35 min and a Km and kcat of 9.38 mM and 63.6 s-1, respectively. Compared with untreated potato strips, 72% acrylamide (2.35 mg/kg) was removed from potato strips pretreated with BcA. These results indicated that this novel BcA variant represents a potential candidate for application in the food-processing industry.


Subject(s)
Asparaginase/genetics , Asparaginase/isolation & purification , Asparaginase/metabolism , Bacillus cereus/enzymology , Bacillus cereus/genetics , Bacillus subtilis/genetics , Acrylamide/analysis , Acrylamide/metabolism , Amino Acid Sequence , Bacillus subtilis/metabolism , Cloning, Molecular , Food Additives/analysis , Food Industry , Gene Expression Regulation, Bacterial , Gene Expression Regulation, Enzymologic , Organisms, Genetically Modified , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Solanum tuberosum/chemistry , Solanum tuberosum/metabolism
9.
Risk Anal ; 39(1): 54-70, 2019 01.
Article in English | MEDLINE | ID: mdl-29228505

ABSTRACT

We developed a simulation model for quantifying the spatio-temporal distribution of contaminants (e.g., xenobiotics) and assessing the risk of exposed populations at the landscape level. The model is a spatio-temporal exposure-hazard model based on (i) tools of stochastic geometry (marked polygon and point processes) for structuring the landscape and describing the exposed individuals, (ii) a dispersal kernel describing the dissemination of contaminants from polygon sources, and (iii) an (eco)toxicological equation describing the toxicokinetics and dynamics of contaminants in affected individuals. The model was implemented in the briskaR package (biological risk assessment with R) of the R software. This article presents the model background, the use of the package in an illustrative example, namely, the effect of genetically modified maize pollen on nontarget Lepidoptera, and typical comparisons of landscape configurations that can be carried out with our model (different configurations lead to different mortality rates in the treated example). In real case studies, parameters and parametric functions encountered in the model will have to be precisely specified to obtain realistic measures of risk and impact and accurate comparisons of landscape configurations. Our modeling framework could be applied to study other risks related to agriculture, for instance, pathogen spread in crops or livestock, and could be adapted to cope with other hazards such as toxic emissions from industrial areas having health effects on surrounding populations. Moreover, the R package has the potential to help risk managers in running quantitative risk assessments and testing management strategies.


Subject(s)
Ecology , Risk Assessment/methods , Xenobiotics/chemistry , Agriculture , Algorithms , Animals , Butterflies , Computer Simulation , Crops, Agricultural , Genetic Engineering , Humans , Livestock , Models, Biological , Organisms, Genetically Modified , Plant Diseases , Pollen , Proportional Hazards Models , Software , Toxicology , Zea mays/genetics
10.
J Biosci Bioeng ; 126(6): 682-689, 2018 Dec.
Article in English | MEDLINE | ID: mdl-30401451

ABSTRACT

The yeast Pichia kudriavzevii N77-4 was isolated from the Korean traditional fermentation starter nuruk. In this study, fermentation performance and stress resistance ability of N77-4 was analyzed. N77-4 displayed superior thermotolerance (up to 44°C) in addition to enhanced acetic acid resistance compared to Saccharomyces cerevisiae. Moreover, N77-4 produced 7.4 g/L of ethanol with an overall production yield of 0.37 g/g glucose in 20 g/L glucose medium. However, in 250 g/L glucose medium the growth of N77-4 slowed down when the concentration of ethanol reached 14 g/L or more and ethanol production yield also decreased to 0.30 g/g glucose. An ethanol sensitivity test indicated that N77-4 was sensitive to the presence of 1% ethanol, which was not the case for S. cerevisiae. Furthermore, N77-4 displayed a severe growth defect in the presence of 6% ethanol. Because inositol biosynthesis is critical for ethanol resistance, expression levels of the PkINO1 encoding a key enzyme for inositol biosynthesis was analyzed under ethanol stress conditions. We found that ethanol stress clearly repressed PkINO1 expression in a dose-dependent manner and overexpression of PkINO1 improved the growth of N77-4 by 19% in the presence of 6% ethanol. Furthermore, inositol supplementation also enhanced the growth by 13% under 6% ethanol condition. These findings indicate that preventing downregulation in PkINO1 expression caused by ethanol stress improves ethanol resistance and enhances the utility of P. kudriavzevii N77-4 in brewing and fermentation biotechnology.


Subject(s)
Bioreactors , Drug Resistance, Fungal/genetics , Ethanol/toxicity , Fermentation/genetics , Phosphoric Monoester Hydrolases/genetics , Pichia , Acetic Acid/metabolism , Ethanol/metabolism , Glucose/metabolism , Metabolic Engineering/methods , Organisms, Genetically Modified , Phosphoric Monoester Hydrolases/metabolism , Pichia/genetics , Pichia/metabolism , Republic of Korea , Thermotolerance/genetics , Up-Regulation/genetics
11.
Sci Rep ; 8(1): 14514, 2018 09 28.
Article in English | MEDLINE | ID: mdl-30266995

ABSTRACT

Antimicrobial genes are found in all classes of life. To efficiently isolate these genes, we used Bacillus subtilis and Escherichia coli as target indicator bacteria and transformed them with cDNA libraries. Among thousands of expressed proteins, candidate proteins played antimicrobial roles from the inside of the indicator bacteria (internal effect), contributing to the sensitivity (much more sensitivity than the external effect from antimicrobial proteins working from outside of the cells) and the high throughput ability of screening. We found that B. subtilis is more efficient and reliable than E. coli. Using the B. subtilis expression system, we identified 19 novel, broad-spectrum antimicrobial genes. Proteins expressed by these genes were extracted and tested, exhibiting strong external antibacterial, antifungal and nematicidal activities. Furthermore, these newly isolated proteins could control plant diseases. Application of these proteins secreted by engineered B. subtilis in soil could inhibit the growth of pathogenic bacteria. These proteins are thermally stable and suitable for clinical medicine, as they exhibited no haemolytic activity. Based on our findings, we speculated that plant, animal and human pathogenic bacteria, fungi or even cancer cells might be taken as the indicator target cells for screening specific resistance genes.


Subject(s)
Bacillus subtilis/genetics , Disease Resistance/genetics , Garlic/genetics , Pinellia/genetics , Plant Proteins/genetics , Animals , Bacillus subtilis/metabolism , Caenorhabditis elegans , Cell Membrane/ultrastructure , Cloning, Molecular , DNA, Complementary/genetics , DNA, Plant/genetics , Escherichia coli/genetics , Escherichia coli/metabolism , Garlic/microbiology , Gram-Negative Bacteria , Gram-Positive Bacteria , High-Throughput Screening Assays , Host-Pathogen Interactions , Organisms, Genetically Modified , Pinellia/microbiology , Plant Diseases/microbiology , Plant Diseases/prevention & control , Plant Proteins/isolation & purification , Plant Proteins/physiology , Protein Stability , Recombinant Proteins/genetics , Species Specificity , Transformation, Bacterial
12.
Plant Cell Physiol ; 59(11): 2214-2227, 2018 Nov 01.
Article in English | MEDLINE | ID: mdl-30020500

ABSTRACT

Pharmaceutically active compounds from medical plants are attractive as a major source for new drug development. Prenylated stilbenoids with increased lipophilicity are valuable secondary metabolites which possess a wide range of biological activities. So far, many prenylated stilbenoids have been isolated from Morus alba but the enzyme responsible for the crucial prenyl modification remains unknown. In the present study, a stilbenoid-specific prenyltransferase (PT), termed Morus alba oxyresveratrol geranyltransferase (MaOGT), was identified and functionally characterized in vitro. MaOGT recognized oxyresveratrol and geranyl diphosphate (GPP) as natural substrates, and catalyzed oxyresveratrol prenylation. Our results indicated that MaOGT shared common features with other aromatic PTs, e.g. multiple transmembrane regions, conserved functional domains and targeting to plant plastids. This distinct PT represents the first stilbenoid-specific PT accepting GPP as a natural prenyl donor, and could help identify additional functionally varied PTs in moraceous plants. Furthermore, MaOGT might be applied for high-efficiency and large-scale prenylation of oxyresveratrol to produce bioactive compounds for potential therapeutic applications.


Subject(s)
Dimethylallyltranstransferase/metabolism , Diphosphates/metabolism , Diterpenes/metabolism , Morus/enzymology , Stilbenes/metabolism , Catalysis , Dimethylallyltranstransferase/genetics , Morus/genetics , Morus/metabolism , Organisms, Genetically Modified , Phylogeny , Plant Extracts/metabolism , Plant Leaves/enzymology , Plant Leaves/metabolism , Plants, Genetically Modified , Prenylation , Recombinant Proteins/metabolism , Saccharomyces cerevisiae/genetics , Sequence Alignment , Substrate Specificity , Nicotiana
13.
Photochem Photobiol ; 94(6): 1273-1280, 2018 11.
Article in English | MEDLINE | ID: mdl-29882378

ABSTRACT

Ultraviolet radiation (UV-R) causes genotoxic and aging effects on skin, and sunscreens are used to alleviate the damage. However, sunscreens contain synthetic shielding agents that can cause harmful effects in the environment. Nature-derived substances may have potential as replacement materials for the harmful sunscreen chemicals. However, screening of a broad range of samples is tedious, and often requires a separate genotoxicity assessment. We describe a simple microplate technique for the screening of UV protective substances using a recombinant Escherichia coli biosensor. Both absorbance-based and bioactivity-based shields can be detected with simultaneous information about the sample genotoxicity. With this technique, a controversial sunscreen compound, oxybenzone offers physical or absorbance-based shield but appears genotoxic at higher concentrations (3.3 mg/mL). We also demonstrate that pine needle extract (PiNe ) shields the biosensor from UV-R in a dose-dependent manner without showing genotoxicity. The physical shield of 5 mg/mL PiNe was similar to that of one of the most common UV-shielding compound TiO2 concentration 0.80 mg/mL. The bioactivity-based shield of PiNe also reaches the extent of the physical shield with the highest concentration (3.3 mg/mL). We conclude that our technique is suitable in detecting the UV-shielding potential of natural substances, and gives simultaneous information on genotoxicity.


Subject(s)
Benzophenones/toxicity , Biosensing Techniques , High-Throughput Screening Assays , Plant Extracts/pharmacology , Plant Leaves/chemistry , Sunscreening Agents/toxicity , Ascorbic Acid/pharmacology , DNA Damage , Dose-Response Relationship, Drug , Escherichia coli/genetics , Escherichia coli/metabolism , Escherichia coli/radiation effects , Humans , Mutagenicity Tests , Organisms, Genetically Modified , Pinus , Plant Extracts/isolation & purification , Skin/radiation effects , Titanium/pharmacology , Ultraviolet Rays , Xanthophylls/pharmacology
14.
J Biosci Bioeng ; 126(3): 317-321, 2018 Sep.
Article in English | MEDLINE | ID: mdl-29636254

ABSTRACT

Metabolic engineering of Saccharomyces cerevisiae often requires a restriction on the ethanol biosynthesis pathway. The non-ethanol-producing strains, however, are slow growers. In this study, a cDNA library constructed from S. cerevisiae was used to improve the slow growth of non-ethanol-producing S. cerevisiae strains lacking all pyruvate decarboxylase enzymes (Pdc-, YSM021). Among the obtained 120 constructs expressing cDNAs, 34 transformants showed a stable phenotype with quicker growth. Sequence analysis showed that the open reading frames of PDC1, DUG1 (Cys-Gly metallo-di-peptidase in the glutathione degradation pathway), and TEF1 (translational elongation factor EF-1 alpha) genes were inserted into the plasmids of 32, 1, and 1 engineered strains, respectively. DUG1 function was confirmed by the construction of YSM021 pGK416-DUG1 strain because the specific growth rate of YSM021 pGK416-DUG1 (0.032 ± 0.0005 h-1) was significantly higher than that of the control strains (0.029 ± 0.0008 h-1). This suggested that cysteine supplied from glutathione was probably used for cell growth and for construction of Fe-S clusters. The results showed that the overexpression of cDNAs is a promising approach to engineer S. cerevisiae metabolism.


Subject(s)
Dipeptidases/genetics , Ethanol/metabolism , Metabolic Engineering/methods , Pyruvate Decarboxylase/genetics , Saccharomyces cerevisiae Proteins/genetics , Saccharomyces cerevisiae , Cysteine/metabolism , DNA, Complementary/genetics , DNA, Complementary/metabolism , Dipeptidases/metabolism , Gene Expression Regulation, Fungal , Glutathione/metabolism , Metabolic Networks and Pathways/genetics , Organisms, Genetically Modified , Plasmids , Pyruvate Decarboxylase/metabolism , Saccharomyces cerevisiae/enzymology , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/growth & development , Saccharomyces cerevisiae/metabolism , Saccharomyces cerevisiae Proteins/metabolism
15.
Article in English | MEDLINE | ID: mdl-29055818

ABSTRACT

Yarrowia lipolytica is considered as a promising microbial cell factory for bio-oil production due to its ability to accumulate a large amount of lipid. However, the regulation of lipid metabolism in this oleaginous yeast is elusive. In this study, the MHY1 gene was disrupted, and 43.1% (w/w) intracellular oil based on cell dry weight was obtained from the disruptant M-MHY1, while only 30.2% (w/w) lipid based on cell dry weight was obtained from the reference strain. RNA-seq was then performed to analyze transcriptional changes during lipid biosynthesis after MHY1 gene inactivation. The expression of 1597 genes, accounting for 24.7% of annotated Y. lipolytica genes, changed significantly in the disruptant M-MHY1 during lipid biosynthesis. Differential gene expression analysis indicated that Mhy1p performs multiple functions and participates in a wide variety of biological processes, including lipid, amino acid and nitrogen metabolism. Notably, data analysis revealed increased carbon flux through lipid biosynthesis following MHY1 gene inactivation, accompanied by decreased carbon flux through amino acid biosynthesis. Moreover, Mhy1p regulates the cell cycle, and the cell cycle rate was enhanced in the disruptant M-MHY1. These results suggest that Mhy1p plays critical regulatory roles in diverse aspects of various biological processes, especially in lipid biosynthesis, amino acid and nitrogen metabolism and cell cycle. Our dataset appears to elucidate the crucial role of Mhy1p in lipid biosynthesis and serves as a resource for exploring physiological dimorphic growth in Y. lipolytica.


Subject(s)
DNA-Binding Proteins/physiology , Fungal Proteins/physiology , Lipid Metabolism/genetics , Yarrowia/genetics , Yarrowia/metabolism , Gene Expression Profiling , Gene Expression Regulation, Fungal , Lipids/biosynthesis , Lipogenesis/genetics , Metabolic Networks and Pathways/genetics , Organisms, Genetically Modified , Plant Oils , Polyphenols/biosynthesis , Transcriptome
16.
Biotechnol Lett ; 39(11): 1599-1609, 2017 Nov.
Article in English | MEDLINE | ID: mdl-28721583

ABSTRACT

As the global population grows more of our fish and seafood are being farmed. Fish are the main dietary source of the omega-3 (n-3) long-chain polyunsaturated fatty acids (LC-PUFA), eicosapentaenoic (EPA) and docosahexaenoic (DHA) acids, but these cannot be produced in sufficient quantities as are now required for human health. Farmed fish have traditionally been fed a diet consisting of fishmeal and fish oil, rich in n-3 LC-PUFA. However, the increase in global aquaculture production has resulted in these finite and limited marine ingredients being replaced with sustainable alternatives of terrestrial origin that are devoid of n-3 LC-PUFA. Consequently, the nutritional value of the final product has been partially compromised with EPA and DHA levels both falling. Recent calls from the salmon industry for new sources of n-3 LC-PUFA have received significant commercial interest. Thus, this review explores the technologies being applied to produce de novo n-3 LC-PUFA sources, namely microalgae and genetically engineered oilseed crops, and how they may be used in aquafeeds to ensure that farmed fish remain a healthy component of the human diet.


Subject(s)
Fatty Acids, Omega-3/genetics , Genetic Engineering/methods , Microalgae/growth & development , Plants, Genetically Modified/growth & development , Animals , Aquaculture , Fatty Acids, Omega-3/biosynthesis , Fish Oils/biosynthesis , Fish Oils/genetics , Humans , Microalgae/genetics , Microalgae/metabolism , Organisms, Genetically Modified/growth & development , Organisms, Genetically Modified/metabolism , Plant Oils , Plants, Genetically Modified/metabolism
17.
Sci Rep ; 7(1): 1237, 2017 04 27.
Article in English | MEDLINE | ID: mdl-28450727

ABSTRACT

Small heat shock proteins (sHSPs) play important roles in responses to heat stress. However, the functions of sHSPs in tea plants (Camellia sinensis) remain uncharacterized. A novel sHSP gene, designated CsHSP17.2, was isolated from tea plants. Subcellular localization analyses indicated that the CsHSP17.2 protein was present in the cytosol and the nucleus. CsHSP17.2 expression was significantly up-regulated by heat stress but was unaffected by low temperature. The CsHSP17.2 transcript levels increased following salt and polyethylene glycol 6000 treatments but decreased in the presence of abscisic acid. The molecular chaperone activity of CsHSP17.2 was demonstrated in vitro. Transgenic Escherichia coli and Pichia pastoris expressing CsHSP17.2 exhibited enhanced thermotolerance. The transgenic Arabidopsis thaliana exhibited higher maximum photochemical efficiencies, greater soluble protein proline contents, higher germination rates and higher hypocotyl elongation length than the wild-type controls. The expression levels of several HS-responsive genes increased in transgenic A. thaliana plants. Additionally, the CsHSP17.2 promoter is highly responsive to high-temperature stress in A. thaliana. Our results suggest that CsHSP17.2 may act as a molecular chaperone to mediate heat tolerance by maintaining maximum photochemical efficiency and protein synthesis, enhancing the scavenging of reactive oxygen species and inducing the expression of HS-responsive genes.


Subject(s)
Camellia sinensis/physiology , Camellia sinensis/radiation effects , Heat-Shock Proteins/metabolism , Molecular Chaperones/metabolism , Stress, Physiological , Thermotolerance , Arabidopsis/genetics , Arabidopsis/physiology , Escherichia coli/genetics , Escherichia coli/radiation effects , Gene Expression Profiling , Heat-Shock Proteins/genetics , Molecular Chaperones/genetics , Organisms, Genetically Modified , Pichia/genetics , Pichia/radiation effects
18.
J Am Soc Nephrol ; 28(9): 2607-2617, 2017 Sep.
Article in English | MEDLINE | ID: mdl-28428331

ABSTRACT

Clinical studies have identified patients with nephrotic syndrome caused by mutations in genes involved in the biosynthesis of coenzyme Q10 (CoQ10), a lipid component of the mitochondrial electron transport chain and an important antioxidant. However, the cellular mechanisms through which these mutations induce podocyte injury remain obscure. Here, we exploited the striking similarities between Drosophila nephrocytes and human podocytes to develop a Drosophila model of these renal diseases, and performed a systematic in vivo analysis assessing the role of CoQ10 pathway genes in renal function. Nephrocyte-specific silencing of Coq2, Coq6, and Coq8, which are genes involved in the CoQ10 pathway that have been associated with genetic nephrotic syndrome in humans, induced dramatic adverse changes in these cells. In particular, silencing of Coq2 led to an abnormal localization of slit diaphragms, collapse of lacunar channels, and more dysmorphic mitochondria. In addition, Coq2-deficient nephrocytes showed elevated levels of autophagy and mitophagy, increased levels of reactive oxygen species, and increased sensitivity to oxidative stress. Dietary supplementation with CoQ10 at least partially rescued these defects. Furthermore, expressing the wild-type human COQ2 gene specifically in nephrocytes rescued the defective protein uptake, but expressing the mutant allele derived from a patient with COQ2 nephropathy did not. We conclude that transgenic Drosophila lines carrying mutations in the CoQ10 pathway genes are clinically relevant models with which to explore the pathogenesis of podocyte injury and could serve as a new platform to test novel therapeutic approaches.


Subject(s)
Alkyl and Aryl Transferases/genetics , Nephrotic Syndrome/genetics , Nephrotic Syndrome/metabolism , Ubiquinone/analogs & derivatives , Vitamins/pharmacology , Alkyl and Aryl Transferases/deficiency , Alleles , Animals , Autophagy/drug effects , Cell Line , Cells, Cultured , Disease Models, Animal , Gene Silencing , Humans , Mitochondria/ultrastructure , Mitophagy/drug effects , Organisms, Genetically Modified , Oxidative Stress , Reactive Oxygen Species/metabolism , Signal Transduction/genetics , Ubiquinone/biosynthesis , Ubiquinone/genetics , Ubiquinone/pharmacology , Vitamins/biosynthesis
19.
Biotechnol Lett ; 39(7): 1049-1058, 2017 Jul.
Article in English | MEDLINE | ID: mdl-28365881

ABSTRACT

OBJECTIVES: To engineer broad spectrum resistance in potato using different expression strategies. RESULTS: The previously identified Ribosome-Inactivating Protein from Phytolacca heterotepala was expressed in potato under a constitutive or a wound-inducible promoter. Leaves and tubers of the plants constitutively expressing the transgene were resistant to Botrytis cinerea and Rhizoctonia solani, respectively. The wound-inducible promoter was useful in driving the expression upon wounding and fungal damage, and conferred resistance to B. cinerea. The observed differences between the expression strategies are discussed considering the benefits and features offered by the two systems. CONCLUSIONS: Evidence is provided of the possible impact of promoter sequences to engineer BSR in plants, highlighting that the selection of a suitable expression strategy has to balance specific needs and target species.


Subject(s)
Disease Resistance , Gene Expression , Organisms, Genetically Modified/immunology , Plant Diseases/prevention & control , Recombinant Proteins/metabolism , Ribosome Inactivating Proteins/metabolism , Solanum tuberosum/immunology , Botrytis/immunology , Botrytis/pathogenicity , Gene Expression Regulation, Plant , Organisms, Genetically Modified/genetics , Phytolacca/enzymology , Phytolacca/genetics , Plant Diseases/microbiology , Recombinant Proteins/genetics , Rhizoctonia/immunology , Rhizoctonia/pathogenicity , Ribosome Inactivating Proteins/genetics , Solanum tuberosum/genetics
20.
Fish Shellfish Immunol ; 64: 287-296, 2017 May.
Article in English | MEDLINE | ID: mdl-28323213

ABSTRACT

Clonorchis sinensis (C. sinensis) is a fish-borne trematode. Human can be infected by ingestion of C. sinensis metacercariae parasitized in grass carp (Ctenopharyngodon idella). For induction of effective oral immune responses, spores of Bacillus subtilis (B. subtilis) WB600 were utilized as vehicle to delivery CsCP (cysteine protease of C. sinensis) cooperated with CotC (B.s-CotC-CP), one of coat proteins, to the gastrointestinal tract. After routine culture of 8-12 h in LB medium, B. subtilis containing CotC-CsCP was transferred into the sporulation culture medium. SDS-PAGE, western blotting and the growth curve indicated that the best sporulation time of recombinant WB600 was 24-30 h at 37 °C with continuous shaking (250 rpm). Grass carp were fed with three levels of B.s-CotC-CP (1 × 106, 1 × 107, and 1 × 108 CFU g-1) incorporated in the basal pellets diet. The commercial pellets or supplemented with spores just expressing CotC (1 × 107 CFU g-1) were served as control diet. Our results showed that grass carp orally immunized with the feed-based B.s-CotC-CP developed a strong specific immune response with significantly (P < 0.05) higher levels of IgM in samples of serum, bile, mucus of surface and intestinal compared to the control groups. Abundant colonization spores expressing CsCP were found in hindgut that is conducive to absorption and presentation of antigen. Moreover, B. subtilis spores appeared to show no sign of toxicity or damage in grass carp. Our cercariae challenge experiments suggested that oral administration of spores expressing CsCP could develop an effective protection against C. sinensis in fish body. Therefore, this study demonstrated that the feed-based recombinant spores could trigger high levels of mucosal and humoral immunity, and would be a promising candidate vaccine against C. sinensis metacercariae formation in freshwater fish.


Subject(s)
Bacillus subtilis/genetics , Carps , Clonorchiasis/veterinary , Cysteine Proteases/metabolism , Dietary Supplements , Fish Diseases/prevention & control , Spores, Bacterial/immunology , Administration, Oral , Animals , Bacillus subtilis/metabolism , Clonorchiasis/immunology , Clonorchiasis/parasitology , Clonorchiasis/prevention & control , Clonorchis sinensis/chemistry , Diet/veterinary , Fish Diseases/immunology , Fish Diseases/parasitology , Helminth Proteins/metabolism , Immunity, Humoral , Immunity, Mucosal , Organisms, Genetically Modified , Probiotics , Random Allocation , Spores, Bacterial/genetics , Vaccines/immunology
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