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1.
BMC Microbiol ; 21(1): 335, 2021 12 07.
Article in English | MEDLINE | ID: mdl-34876006

ABSTRACT

BACKGROUND: The native potatoes (Solanum tuberosum subsp. tuberosum L.) grown in Chile (Chiloé) represent a new, unexplored source of endophytes to find potential biological control agents for the prevention of bacterial diseases, like blackleg and soft rot, in potato crops. RESULT: The objective of this study was the selection of endophytic actinobacteria from native potatoes for antagonistic activity against Pectobacterium carotovorum subsp. carotovorum and Pectobacterium atrosepticum, and their potential to suppress tissue maceration symptoms in potato tubers. This potential was determined through the quorum quenching activity using a Chromobacterium violaceaum ATCC 12472 Wild type (WT) bioassay and its colonization behavior of the potato plant root system (S. tuberosum) by means of the Double labeling of oligonucleotide probes for fluorescence in situ hybridization (DOPE-FISH) targeting technique. The results showed that although Streptomyces sp. TP199 and Streptomyces sp. A2R31 were able to inhibit the growth of the pathogens, only the Streptomyces sp. TP199 isolate inhibited Pectobacterium sp. growth and diminished tissue maceration in tubers (p ≤ 0.05). Streptomyces sp. TP199 had metal-dependent acyl homoserine lactones (AHL) quorum quenching activity in vitro and was able to colonize the root endosphere 10 days after inoculation. CONCLUSIONS: We concluded that native potatoes from southern Chile possess endophyte actinobacteria that are potential agents for the disease management of soft rot and blackleg.


Subject(s)
Actinobacteria/physiology , Antibiosis/physiology , Endophytes/physiology , Solanum tuberosum/microbiology , Actinobacteria/classification , Actinobacteria/genetics , Actinobacteria/isolation & purification , Biological Control Agents/isolation & purification , Chile , Endophytes/classification , Endophytes/genetics , Endophytes/isolation & purification , Pectobacterium/physiology , Plant Diseases/microbiology , Plant Diseases/prevention & control , Plant Tubers/microbiology , Quorum Sensing , Streptomyces/classification , Streptomyces/genetics , Streptomyces/isolation & purification , Streptomyces/physiology
2.
Viruses ; 13(6)2021 06 08.
Article in English | MEDLINE | ID: mdl-34201375

ABSTRACT

Using bacteriophages (bacterial viruses) to control pathogenic bacteria is a promising approach in horticulture. However, the application of this strategy in real conditions requires compliance with particular technological and environmental restraints. The presented paper concerns the process of phage selection to create a cocktail that is efficient against the circulating causal agents of potato soft rot. The resulting phage cocktail causes a complete lysis of a mixture of circulating pectobacterial strains in vitro. In the context of being used to treat ware potatoes during off-season storage, the protocol of phage application via the humidity maintenance system was designed. The phage cocktail was shown to reduce the population of Pectobacterium spp. 10-12-fold, achieving a population that was below a symptomatic threshold.


Subject(s)
Bacteriophages/physiology , Biological Control Agents/pharmacology , Pectobacterium/physiology , Plant Diseases/prevention & control , Solanum tuberosum/virology , Plant Diseases/microbiology
3.
Microbiology (Reading) ; 166(9): 837-848, 2020 09.
Article in English | MEDLINE | ID: mdl-32639227

ABSTRACT

Bacterial soft rot caused by the bacteria Dickeya and Pectobacterium is a destructive disease of vegetables, as well as ornamental plants. Several management options exist to help control these pathogens. Because of the limited success of these approaches, there is a need for the development of alternative methods to reduce losses. In this study, we evaluated the effect of potassium tetraborate tetrahydrate (PTB) on the growth of six Dickeya and Pectobacterium spp. Disc diffusion assays showed that Dickeya spp. and Pectobacterium spp. differ in their sensitivity to PTB. Spontaneous PTB-resistant mutants of Pectobacterium were identified and further investigation of the mechanism of PTB resistance was conducted by full genome sequencing. Point mutations in genes cpdB and supK were found in a single Pectobacterium atrosepticum PTB-resistant mutant. Additionally, point mutations in genes prfB (synonym supK) and prmC were found in two independent Pectobacterium brasiliense PTB-resistant mutants. prfB and prmC encode peptide chain release factor 2 and its methyltransferase, respectively. We propose the disruption of translation activity due to PTB leads to Pectobacterium growth inhibition. The P. atrosepticum PTB-resistant mutant showed altered swimming motility. Disease severity was reduced for P. atrosepticum-inoculated potato stems sprayed with PTB. We discuss the potential risk of selecting for bacterial resistance to this chemical.


Subject(s)
Anti-Bacterial Agents/pharmacology , Borates/pharmacology , Dickeya/drug effects , Pectobacterium/drug effects , Solanum tuberosum/microbiology , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Dickeya/genetics , Dickeya/growth & development , Dickeya/physiology , Disk Diffusion Antimicrobial Tests , Drug Resistance, Bacterial/genetics , Genes, Bacterial , Genetic Complementation Test , Movement , Pectobacterium/genetics , Pectobacterium/growth & development , Pectobacterium/physiology , Peptide Termination Factors/genetics , Peptide Termination Factors/metabolism , Plant Diseases/microbiology , Point Mutation , Protein Methyltransferases/genetics , Protein Methyltransferases/metabolism
4.
Appl Microbiol Biotechnol ; 104(10): 4547-4561, 2020 May.
Article in English | MEDLINE | ID: mdl-32215712

ABSTRACT

"The Great Five" (GF) is an artificial bacterial consortium developed to protect potato tubers from soft rot caused by Pectobacterium spp. and Dickeya spp. To investigate the commercialization potential of the GF, we developed liquid and powder formulations of the consortium and of each of the comprising strains (Serratia plymuthica strain A294, Enterobacter amnigenus strain A167, Rahnella aquatilis strain H145, Serratia rubidaea strain H440, and S. rubidaea strain H469). To form powders, the cells were lyophilized using a newly developed lyoprotectant: Reagent PS. The shelf life of the formulations stored at 8 and 22 °C was monitored for a period of 12 months. The longest shelf life was obtained for formulations stored at 8 °C; however, the viability of all formulations was negatively affected at 22 °C. For the consortium, a 2.5 log10 cfu (colony forming units) drop in cell number was recorded for the liquid formulation after 6 months, while in case of powders, the drop remained below 1 log10 cfu following 12 months. The ability of the powder formulations to preserve biocontrol activity of the consortium was tested on potato tubers treated with the formulations and a mixture of the soft rot pathogens. The inoculated tubers were stored for 6 months at 8 °C to mimic commercial storage conditions. Soft rot severity and incidence on potato tubers treated with formulations were significantly reduced (62-75% and 48-61%, respectively) in comparison to positive control with pathogens alone. The potential use of the newly developed formulations of "The Great Five" for the biocontrol of soft rot is discussed. KEY POINTS : • An innovative reagent to protect bacterial cells during lyophilization was developed. • Powder formulations of "The Great Five" prolonged its shelf life. • The powder-formulated "The Great Five" was active against soft rot bacteria on potato tubers.


Subject(s)
Antibiosis , Dickeya/physiology , Food Storage/methods , Microbial Consortia , Pectobacterium/physiology , Solanum tuberosum/microbiology , Biological Control Agents , Colony Count, Microbial , Dickeya/pathogenicity , Pectobacterium/pathogenicity
5.
Plant Dis ; 103(6): 1374-1382, 2019 Jun.
Article in English | MEDLINE | ID: mdl-30908126

ABSTRACT

Possibilities to protect potato tubers from rotting caused by Soft Rot Pectobacteriaceae (SRP) under disease favoring conditions were investigated using compatible mixtures of bacterial antagonists and tested with a newly developed stepwise efficacy-based screening protocol. Twenty-two bacterial antagonists were evaluated against a combination of five Pectobacterium and Dickeya strains representing species and subspecies most often associated with potato soft rot in Europe. To enable potential synergistic activity, the antagonists were initially tested against the combination of pathogens in 15 random mixtures containing up to 5 antagonists each. Three mixtures (M2, M4, and M14) out of 15 tested reduced tuber tissue maceration due to soft rot. The individual antagonists derived from M2, M4, and M14 mixtures were tested on potato slices and whole tuber injection assays. These five strains (S. plymuthica strain A294, E. amnigenus strain A167, R. aquatilis strain H145, S. rubidaea strain H440, and S. rubidaea strain H469) were combined to develop a tailored biological control mixture against potato soft rot. The new mixture, designated the Great Five (GF), was tested on seed potato tubers vacuum infiltrated with antagonists and subsequently with the combination of five SRP pathogens. In these experiments, the GF mixture provided stable protection of inoculated potato tubers, reducing soft rot by 46% (P = 0.0016) under high disease pressure conditions. The A294, A167, H145, H440, and H469 antagonists were characterized for features important for viable commercial applications including growth at different temperatures, resistance to antibiotics, and potential toxicity toward Caenorhabditis elegans. The implications for control of soft rot caused by SRP with the use of the GF mixture of antagonists are discussed.


Subject(s)
Bacterial Physiological Phenomena , Gammaproteobacteria , Microbial Interactions , Plant Diseases , Plant Tubers , Solanum tuberosum , Biological Control Agents , Europe , Gammaproteobacteria/physiology , Pectobacterium/physiology , Plant Diseases/microbiology , Plant Diseases/prevention & control , Plant Tubers/microbiology , Solanum tuberosum/microbiology
6.
Annu Rev Phytopathol ; 56: 269-288, 2018 08 25.
Article in English | MEDLINE | ID: mdl-29958075

ABSTRACT

Bacterial soft rot is a disease complex caused by multiple genera of gram-negative and gram-positive bacteria, with Dickeya and Pectobacterium being the most widely studied soft-rot bacterial pathogens. In addition to soft rot, these bacteria also cause blackleg of potato, foot rot of rice, and bleeding canker of pear. Multiple Dickeya and Pectobacterium species cause the same symptoms on potato, complicating epidemiology and disease resistance studies. The primary pathogen species present in potato-growing regions differs over time and space, further complicating disease management. Genomics technologies are providing new management possibilities, including improved detection and biocontrol methods that may finally allow effective disease management. The recent development of inbred diploid potato lines is also having a major impact on studying soft-rot pathogens because it is now possible to study soft-rot disease in model plant species that produce starchy vegetative storage organs. Together, these new discoveries have changed how we face diseases caused by these pathogens.


Subject(s)
Enterobacteriaceae/physiology , Oryza/microbiology , Plant Diseases/microbiology , Pyrus/microbiology , Solanum tuberosum/microbiology , Pectobacterium/physiology , Plant Diseases/prevention & control
7.
Arch Virol ; 163(6): 1691-1694, 2018 Jun.
Article in English | MEDLINE | ID: mdl-29423549

ABSTRACT

Bacteriophage vB_PpaP_PP74 (PP74) is a novel virulent phage that infects members of the species Pectobacterium parmentieri, a newly established species of soft-rot-causing bacteria in the family Pectobacteriaceae, derived from potato-specific Pectobacterium wasabiae. vB_PpaP_PP74 was identified as a member of the family Podoviridae by transmission electron microscopy. The phage has a 39,790-bp dsDNA genome containing 50 open reading frames (ORFs). Because of the absence of genes encoding toxins or lysogeny factors, PP74 may be considered a candidate phage for pathogen biocontrol applications. The genome layout is similar to genomes of T7-like phages within the subfamily Autographivirinae, and therefore, functions can be attributed to most of ORFs. However, the closest nucleotide sequence homologs of phage PP74 are unclassified Escherichia phages. Based on phylogenetic analysis, vB_PpaP_PP74 is a sensu lato T7-like phage, but it forms a distant subgenus group together with homologous enterobacterial phages.


Subject(s)
Bacteriophages/genetics , DNA, Viral/genetics , Genome, Viral , Pectobacterium/virology , Podoviridae/genetics , Bacteriophages/classification , Bacteriophages/isolation & purification , Base Sequence , Biological Control Agents , Chromosome Mapping , Genomics/methods , Open Reading Frames , Pectobacterium/pathogenicity , Pectobacterium/physiology , Phylogeny , Podoviridae/classification , Podoviridae/isolation & purification , Sequence Analysis, DNA , Solanum tuberosum/microbiology
8.
N Biotechnol ; 39(Pt B): 181-189, 2017 Oct 25.
Article in English | MEDLINE | ID: mdl-28847714

ABSTRACT

Dickeya spp. and Pectobacterium spp. are etiological agents of soft rot on crops, vegetables, and ornamentals. They also cause blackleg on potato. These pectinolytic phytopathogens are responsible for significant economic losses, mostly within the potato production sector. Importantly, there are no methods to eradicate these microorganisms once they have infected plant material. Solely preventive measures remain, including early detection and identification of the pathogens, monitoring of their spread in addition to planting certified seed material tested for latent infections. As proper identification of the causative agent allows for efficient limitation of disease spread, numerous detection and differentiation methods have been developed. Most commonly followed procedures involve: isolation of viable bacterial cells (alternatively post-enrichment) on semi-selective media, identification to species level by PCR (single, multiplex, Real time), serology or fatty acids profiling. Differentiation of the isolates is often accomplished by sequencing the housekeeping genes or molecular fingerprinting. In view of lowering total costs of next-generation sequencing (NGS), a huge amount of generated data reveals subtle differences between strains that have proven to be potentially useful for the establishment of specific novel detection pipelines. Successful implementation of molecular diagnostic methods is exemplified by 20-year studies on the populations of pectinolytic bacteria on potatoes in Poland. The presented work aims to gather the characteristics of Dickeya spp. and Pectobacterium spp. important for the identification process in addition to providing an overview of modern and newly developed specific, rapid, high-throughput and cost-effective screening methods for the detection and identification of these phytopathogens.


Subject(s)
Enterobacteriaceae/physiology , Molecular Biology/methods , Pectobacterium/physiology , Plant Diseases/microbiology , Plant Diseases/prevention & control , Solanum tuberosum/microbiology
9.
Sci Rep ; 6: 38126, 2016 12 01.
Article in English | MEDLINE | ID: mdl-27905512

ABSTRACT

Quorum sensing (QS) is a population density-dependent regulatory system in bacteria that couples gene expression to cell density through accumulation of diffusible signaling molecules. Pectobacteria are causal agents of soft rot disease in a range of economically important crops. They rely on QS to coordinate their main virulence factor, production of plant cell wall degrading enzymes (PCWDEs). Plants have evolved an array of antimicrobial compounds to anticipate and cope with pathogens, of which essential oils (EOs) are widely recognized. Here, volatile EOs, carvacrol and eugenol, were shown to specifically interfere with QS, the master regulator of virulence in pectobacteria, resulting in strong inhibition of QS genes, biofilm formation and PCWDEs, thereby leading to impaired infection. Accumulation of the signal molecule N-acylhomoserine lactone declined upon treatment with EOs, suggesting direct interaction of EOs with either homoserine lactone synthase (ExpI) or with the regulatory protein (ExpR). Homology models of both proteins were constructed and docking simulations were performed to test the above hypotheses. The resulting binding modes and docking scores of carvacrol and eugenol support potential binding to ExpI/ExpR, with stronger interactions than previously known inhibitors of both proteins. The results demonstrate the potential involvement of phytochemicals in the control of Pectobacterium.


Subject(s)
Pectobacterium/drug effects , Plant Oils/pharmacology , Quorum Sensing/drug effects , 4-Butyrolactone/analogs & derivatives , 4-Butyrolactone/pharmacology , Amino Acid Sequence , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Bacterial Proteins/physiology , Biofilms/drug effects , Biofilms/growth & development , Cymenes , Eugenol/pharmacology , Gene Expression/drug effects , Genes, Bacterial , Models, Molecular , Monoterpenes/pharmacology , Oils, Volatile/pharmacology , Pectobacterium/pathogenicity , Pectobacterium/physiology , Phenols/pharmacology , Plant Diseases/microbiology , Plant Diseases/prevention & control , Polygalacturonase/antagonists & inhibitors , Polysaccharide-Lyases/antagonists & inhibitors , Quorum Sensing/genetics , Quorum Sensing/physiology , Sequence Homology, Amino Acid , Structural Homology, Protein , Virulence/drug effects , Virulence/genetics , Virulence/physiology
10.
ACS Chem Biol ; 11(7): 2049-56, 2016 07 15.
Article in English | MEDLINE | ID: mdl-27213700

ABSTRACT

Transcriptional activity is exquisitely sensitive to changes in promoter DNA topology. Transcription factors may therefore control gene activity by modulating the relative positioning of -10 and -35 promoter elements. The plant pathogen Pectobacterium atrosepticum, which causes soft rot in potatoes, must alter gene expression patterns to ensure growth in planta. In the related soft-rot enterobacterium Dickeya dadantii, PecS functions as a master regulator of virulence gene expression. Here, we report that P. atrosepticum PecS controls gene activity by altering promoter DNA topology in response to pH. While PecS binds the pecS promoter with high affinity regardless of pH, it induces significant DNA distortion only at neutral pH, the pH at which the pecS promoter is repressed in vivo. At pH ∼8, DNA distortions are attenuated, and PecS no longer represses the pecS promoter. A specific histidine (H142) located in a crevice between the dimerization- and DNA-binding regions is required for pH-dependent changes in DNA distortion and repression of gene activity, and mutation of this histidine renders the mutant protein incapable of repressing the pecS promoter. We propose that protonated PecS induces a DNA conformation at neutral pH in which -10 and -35 promoter elements are suboptimally positioned for RNA polymerase binding; on deprotonation of PecS, binding is no longer associated with significant changes in DNA conformation, allowing gene expression. We suggest that this mode of gene regulation leads to differential expression of the PecS regulon in response to alkalinization of the plant apoplast.


Subject(s)
DNA, Plant/chemistry , Gene Expression Regulation, Plant/physiology , Pectobacterium/physiology , Bacterial Proteins/metabolism , DNA, Plant/metabolism , Hydrogen-Ion Concentration , Nucleic Acid Conformation , Pectobacterium/genetics , Protein Binding , Solanum tuberosum/genetics
11.
Plant Biol (Stuttg) ; 18(4): 609-17, 2016 Jul.
Article in English | MEDLINE | ID: mdl-26992469

ABSTRACT

Representatives of Pectobacterium genus are some of the most harmful phytopathogens in the world. In the present study, we have elucidated novel aspects of plant-Pectobacterium atrosepticum interactions. This bacterium was recently demonstrated to form specific 'multicellular' structures - bacterial emboli in the xylem vessels of infected plants. In our work, we showed that the process of formation of these structures includes the pathogen-induced reactions of the plant. The colonisation of the plant by P. atrosepticum is coupled with the release of a pectic polysaccharide, rhamnogalacturonan I, into the vessel lumen from the plant cell wall. This polysaccharide gives rise to a gel that serves as a matrix for bacterial emboli. P. atrosepticum-caused infection involves an increase of reactive oxygen species (ROS) levels in the vessels, creating the conditions for the scission of polysaccharides and modification of plant cell wall composition. Both the release of rhamnogalacturonan I and the increase in ROS precede colonisation of the vessels by bacteria and occur only in the primary xylem vessels, the same as the subsequent formation of bacterial emboli. Since the appearance of rhamnogalacturonan I and increase in ROS levels do not hamper the bacterial cells and form a basis for the assembly of bacterial emboli, these reactions may be regarded as part of the susceptible response of the plant. Bacterial emboli thus represent the products of host-pathogen integration, since the formation of these structures requires the action of both partners.


Subject(s)
Host-Pathogen Interactions , Nicotiana/microbiology , Pectins/metabolism , Pectobacterium/physiology , Plant Diseases/microbiology , Reactive Oxygen Species/metabolism , Xylem/microbiology , Cell Wall/metabolism , Cell Wall/ultrastructure , Pectins/analysis , Polysaccharides/analysis , Polysaccharides/metabolism , Reactive Oxygen Species/analysis , Nicotiana/metabolism , Nicotiana/ultrastructure , Xylem/metabolism , Xylem/ultrastructure
12.
Sci Rep ; 5: 11606, 2015 Jun 29.
Article in English | MEDLINE | ID: mdl-26118792

ABSTRACT

Endophytes are microbes and fungi that live inside plant tissues without damaging the host. Herein we examine the dynamic changes in the endophytic bacterial community in potato (Solanum tuberosum) tuber in response to pathogenic infection by Pectobacterium atrosepticum, which causes soft rot in numerous economically important crops. We quantified community changes using both cultivation and next-generation sequencing of the 16S rRNA gene and found that, despite observing significant variability in both the mass of macerated tissue and structure of the endophytic community between individual potato tubers, P. atrosepticum is always taken over by the endophytes during maceration. 16S rDNA sequencing revealed bacteria from the phyla Proteobacteria, Actinobacteria, Firmicutes, Bacteroidetes, Fusobacteria, Verrucomicrobia, Acidobacteria, TM7, and Deinococcus-Thermus. Prior to infection, Propionibacterium acnes is frequently among the dominant taxa, yet is out competed by relatively few dominant taxa as the infection proceeds. Two days post-infection, the most abundant sequences in macerated potato tissue are Gammaproteobacteria. The most dominant genera are Enterobacter and Pseudomonas. Eight days post-infection, the number of anaerobic pectolytic Clostridia increases, probably due to oxygen depletion. These results demonstrate that the pathogenesis is strictly initiated by the pathogen (sensu stricto) and proceeds with a major contribution from the endophytic community.


Subject(s)
Pectobacterium/physiology , Plant Tubers/microbiology , Solanum tuberosum/microbiology , Base Sequence , Endophytes , High-Throughput Nucleotide Sequencing , Microbiota/genetics , Pectobacterium/genetics , Pectobacterium/growth & development , Pectobacterium/isolation & purification , Phenotype , Phylogeny , RNA, Ribosomal, 16S/genetics
13.
Microbiology (Reading) ; 160(Pt 7): 1427-1439, 2014 Jul.
Article in English | MEDLINE | ID: mdl-24760967

ABSTRACT

Bis-(3'-5')-cyclic dimeric guanosine monophosphate (c-di-GMP) is a ubiquitous bacterial signalling molecule produced by diguanylate cyclases of the GGDEF-domain family. Elevated c-di-GMP levels or increased GGDEF protein expression is frequently associated with the onset of sessility and biofilm formation in numerous bacterial species. Conversely, phosphodiesterase-dependent diminution of c-di-GMP levels by EAL- and HD-GYP-domain proteins is often accompanied by increased motility and virulence. In this study, we individually overexpressed 23 predicted GGDEF, EAL or HD-GYP-domain proteins encoded by the phytopathogen Pectobacterium atrosepticum strain SCRI1043. MS-based detection of c-di-GMP and 5'-phosphoguanylyl-(3'-5')-guanosine in these strains revealed that overexpression of most genes promoted modest 1-10-fold changes in cellular levels of c-di-GMP, with the exception of the GGDEF-domain proteins ECA0659 and ECA3374, which induced 1290- and 7660-fold increases, respectively. Overexpression of most EAL domain proteins increased motility, while overexpression of most GGDEF domain proteins reduced motility and increased poly-ß-1,6-N-acetyl-glucosamine-dependent flocculation. In contrast to domain-based predictions, overexpression of the EAL protein ECA3549 or the HD-GYP protein ECA3548 increased c-di-GMP concentrations and reduced motility. Most overexpression constructs altered the levels of secreted cellulases, pectinases and proteases, confirming c-di-GMP regulation of virulence in Pe. atrosepticum. However, there was no apparent correlation between virulence-factor induction and the domain class expressed or cellular c-di-GMP levels, suggesting that regulation was in response to specific effectors within the network, rather than total c-di-GMP concentration. Finally, we demonstrated that the cellular localization patterns vary considerably for GGDEF/EAL/HD-GYP proteins, indicating it is a likely factor restricting specific interactions within the c-di-GMP network.


Subject(s)
Bacterial Proteins/genetics , Cyclic GMP/analogs & derivatives , Gene Expression Regulation, Bacterial , Pectobacterium/genetics , Pectobacterium/physiology , Plant Diseases/microbiology , Signal Transduction , Solanum tuberosum/microbiology , Bacterial Proteins/metabolism , Computational Biology , Cyclic GMP/analysis , Cyclic GMP/metabolism , Gene Expression , Pectobacterium/pathogenicity , Phenotype , Plant Tubers/microbiology , Recombinant Fusion Proteins , Virulence
14.
PLoS One ; 8(9): e73718, 2013.
Article in English | MEDLINE | ID: mdl-24040039

ABSTRACT

In this study, we characterized a putative Flp/Tad pilus-encoding gene cluster, and we examined its regulation at the transcriptional level and its role in the virulence of potato pathogenic enterobacteria of the genus Pectobacterium. The Flp/Tad pilus-encoding gene clusters in Pectobacterium atrosepticum, Pectobacterium wasabiae and Pectobacterium aroidearum were compared to previously characterized flp/tad gene clusters, including that of the well-studied Flp/Tad pilus model organism Aggregatibacter actinomycetemcomitans, in which this pilus is a major virulence determinant. Comparative analyses revealed substantial protein sequence similarity and open reading frame synteny between the previously characterized flp/tad gene clusters and the cluster in Pectobacterium, suggesting that the predicted flp/tad gene cluster in Pectobacterium encodes a Flp/Tad pilus-like structure. We detected genes for a novel two-component system adjacent to the flp/tad gene cluster in Pectobacterium, and mutant analysis demonstrated that this system has a positive effect on the transcription of selected Flp/Tad pilus biogenesis genes, suggesting that this response regulator regulate the flp/tad gene cluster. Mutagenesis of either the predicted regulator gene or selected Flp/Tad pilus biogenesis genes had a significant impact on the maceration ability of the bacterial strains in potato tubers, indicating that the Flp/Tad pilus-encoding gene cluster represents a novel virulence determinant in Pectobacterium. Soft-rot enterobacteria in the genera Pectobacterium and Dickeya are of great agricultural importance, and an investigation of the virulence of these pathogens could facilitate improvements in agricultural practices, thus benefiting farmers, the potato industry and consumers.


Subject(s)
Bacterial Proteins/genetics , Fimbriae, Bacterial/genetics , Multigene Family , Pectobacterium/genetics , Aggregatibacter actinomycetemcomitans/genetics , Aggregatibacter actinomycetemcomitans/pathogenicity , Aggregatibacter actinomycetemcomitans/physiology , Bacterial Proteins/metabolism , Base Sequence , Biofilms/growth & development , Fimbriae, Bacterial/physiology , Gene Expression Regulation, Bacterial , Molecular Sequence Data , Oligonucleotide Array Sequence Analysis , Pectobacterium/pathogenicity , Pectobacterium/physiology , Plant Diseases/microbiology , Plant Tubers/microbiology , Reverse Transcriptase Polymerase Chain Reaction , Sequence Homology, Nucleic Acid , Solanum tuberosum/microbiology , Transcriptome , Virulence/genetics
15.
PLoS One ; 8(6): e66642, 2013.
Article in English | MEDLINE | ID: mdl-23805254

ABSTRACT

The virulence of numerous Gram-negative bacteria is under the control of a quorum sensing process based on synthesis and perception of N-acyl homoserine lactones. Rhodococcus erythropolis, a Gram-positive bacterium, has recently been proposed as a biocontrol agent for plant protection against soft-rot bacteria, including Pectobacterium. Here, we show that the γ-lactone catabolic pathway of R. erythropolis disrupts Pectobacterium communication and prevents plant soft-rot. We report the first characterization and demonstration of N-acyl homoserine lactone quenching in planta. In particular, we describe the transcription of the R. erythropolis lactonase gene, encoding the key enzyme of this pathway, and the subsequent lactone breakdown. The role of this catabolic pathway in biocontrol activity was confirmed by deletion of the lactonase gene from R. erythropolis and also its heterologous expression in Escherichia coli. The γ-lactone catabolic pathway is induced by pathogen communication rather than by pathogen invasion. This is thus a novel and unusual biocontrol pathway, differing from those previously described as protecting plants from phytopathogens. These findings also suggest the existence of an additional pathway contributing to plant protection.


Subject(s)
Acyl-Butyrolactones/metabolism , Pectobacterium/physiology , Rhodococcus/metabolism , Acyl-Butyrolactones/analysis , Acyl-Butyrolactones/pharmacology , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Chromatography, High Pressure Liquid , Escherichia coli/metabolism , Mass Spectrometry , Microscopy, Confocal , Plant Tubers/microbiology , Quorum Sensing/drug effects , Rhodococcus/genetics , Solanum tuberosum/microbiology
16.
Phytopathology ; 103(4): 333-40, 2013 Apr.
Article in English | MEDLINE | ID: mdl-23506361

ABSTRACT

The foodborne pathogen Escherichia coli O157:H7 is increasingly associated with fresh produce (fruit and vegetables). Bacterial colonization of fresh produce plants can occur to high levels on the external tissue but bacteria have also been detected within plant tissue. However, questions remain about the extent of internalization, its molecular basis, and internal location of the bacteria. We have determined the extent of internalization of E. coli O157:H7 in live spinach and lettuce plants and used high-resolution microscopy to examine colony formation in roots and pathways to internalization. E. coli O157:H7 was found within internal tissue of both produce species. Colonization occurred within the apoplast between plant cells. Furthermore, colonies were detected inside the cell wall of epidermal and cortical cells of spinach and Nicotiana benthamiana roots. Internal colonization of epidermal cells resembled that of the phytopathogen Pectobacterium atrosepticum on potato. In contrast, only sporadic cells of the laboratory strain of E. coli K-12 were found on spinach, with no internal bacteria evident. The data extend previous findings that internal colonization of plants appears to be limited to a specific group of plant-interacting bacteria, including E. coli O157:H7, and demonstrates its ability to invade the cells of living plants.


Subject(s)
Escherichia coli O157/physiology , Escherichia coli/physiology , Lactuca/microbiology , Plant Roots/microbiology , Spinacia oleracea/microbiology , Vegetables/microbiology , Colony Count, Microbial , Endophytes , Escherichia coli/cytology , Escherichia coli/growth & development , Escherichia coli O157/cytology , Escherichia coli O157/growth & development , Food Contamination , Food Microbiology , Host-Pathogen Interactions , Humans , Lactuca/cytology , Microscopy, Electron, Transmission , Pectobacterium/cytology , Pectobacterium/growth & development , Pectobacterium/physiology , Plant Diseases/microbiology , Plant Leaves/microbiology , Plants, Genetically Modified , Rhizosphere , Soil Microbiology , Solanum tuberosum/cytology , Solanum tuberosum/microbiology , Spinacia oleracea/cytology , Nicotiana/cytology , Nicotiana/microbiology
17.
Mol Plant Microbe Interact ; 26(3): 356-66, 2013 Mar.
Article in English | MEDLINE | ID: mdl-23113713

ABSTRACT

Plant cell wall-degrading enzymes (PCWDE) are key virulence determinants in the pathogenesis of the potato pathogen Pectobacterium atrosepticum. In this study, we report the impact on virulence of a transposon insertion mutation in the metJ gene that codes for the repressor of the methionine biosynthesis regulon. In a mutant strain defective for the small regulatory RNA rsmB, PCWDE are not produced and virulence in potato tubers is almost totally abolished. However, when the metJ gene is disrupted in this background, the rsmB(-) phenotype is suppressed and virulence and PCWDE production are restored. Additionally, when metJ is disrupted, production of the quorum-sensing signal, N-(3-oxohexanoyl)-homoserine lactone, is increased. The metJ mutant strains showed pleiotropic transcriptional impacts affecting approximately a quarter of the genome. Genes involved in methionine biosynthesis were most highly upregulated but many virulence-associated transcripts were also upregulated. This is the first report of the impact of the MetJ repressor on virulence in bacteria.


Subject(s)
Bacterial Proteins/genetics , Gene Expression Regulation, Bacterial/genetics , Pectobacterium/genetics , Quorum Sensing/genetics , Repressor Proteins/genetics , Solanum tuberosum/microbiology , 4-Butyrolactone/analogs & derivatives , 4-Butyrolactone/metabolism , Amino Acid Sequence , Bacterial Proteins/metabolism , Cell Wall/metabolism , Gene Expression Profiling , Methionine/metabolism , Molecular Sequence Data , Mutagenesis, Insertional , Nucleotide Motifs , Oligonucleotide Array Sequence Analysis , Pectobacterium/enzymology , Pectobacterium/pathogenicity , Pectobacterium/physiology , Peptide Hydrolases/metabolism , Phenotype , Plant Tubers/microbiology , Polysaccharide-Lyases/metabolism , Repressor Proteins/metabolism , Sequence Alignment , Signal Transduction , Virulence
18.
Phytopathology ; 100(11): 1128-37, 2010 Nov.
Article in English | MEDLINE | ID: mdl-20932162

ABSTRACT

Translocation of a green fluorescent protein (GFP)-tagged Dickeya sp. from stems or from leaves to underground parts of potato plants was studied in greenhouse experiments. Thirty days after stem inoculation, 90% of plants expressed symptoms at the stem base and 95% of plants showed browning of internal stem tissue. The GFP-tagged Dickeya sp. was detected by dilution plating in extracts of the stem interiors (100%), stem bases (90%), roots (80%), stolons (55%), and progeny tubers (24%). In roots, the GFP-tagged Dickeya sp. was found inside and between parenchyma cells whereas, in stems and stolons, the GFP-tagged Dickeya sp. was found in the xylem vessels and protoxylem cells. In progeny tubers, this strain was detected in the stolon end. Thirty days after leaf inoculation, the GFP-tagged Dickeya sp. was detected in extracts of 75% of the leaves, 88% of the petioles, 63% of the axils, and inside 25% of the stems taken 15 cm above the ground level. UV microscopy confirmed the presence of the GFP-tagged Dickeya sp. inside petioles and in the main leaf veins. No blackleg or aerial stem rot and no translocation of the GFP-tagged Dickeya sp. to underground plant parts was observed. The implications for contamination of progeny tubers are discussed.


Subject(s)
Green Fluorescent Proteins , Pectobacterium/physiology , Plant Stems/microbiology , Solanum tuberosum/microbiology , Host-Pathogen Interactions , Pectobacterium/classification , Pectobacterium/genetics , Plant Diseases/microbiology , Plant Leaves/microbiology , Plant Tubers/microbiology , Staining and Labeling , Xylem/microbiology
19.
Appl Environ Microbiol ; 73(12): 4078-81, 2007 Jun.
Article in English | MEDLINE | ID: mdl-17468275

ABSTRACT

The psychrotolerant bacterium Pectobacterium atrosepticum produces four N-acyl homoserine lactones under a wide range of temperatures. Their thermoregulation differs from that of the exoenzyme production, described as being under quorum-sensing control. A mechanism involved in this thermoregulation consists of controlling N-acyl homoserine lactones synthase production at a transcriptional level.


Subject(s)
Acyl-Butyrolactones/metabolism , Body Temperature Regulation/physiology , Gene Expression Regulation, Enzymologic , Ligases/metabolism , Pectobacterium/physiology , Quorum Sensing/physiology , Base Sequence , DNA Primers , Ligases/genetics , Molecular Sequence Data , Plant Diseases/microbiology , Reverse Transcriptase Polymerase Chain Reaction , Sequence Analysis, DNA , Solanum tuberosum/microbiology , Temperature
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