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1.
Sci Rep ; 10(1): 4121, 2020 03 05.
Article in English | MEDLINE | ID: mdl-32139754

ABSTRACT

Given the major threat of phytopathogenic bacteria to food production and ecosystem stability worldwide, novel alternatives to conventional chemicals-based agricultural practices are needed to combat these bacteria. The objective of this study is to evaluate the ability of Pseudomonas segetis strain P6, which was isolated from the Salicornia europaea rhizosphere, to act as a potential biocontrol agent given its plant growth-promoting (PGP) and quorum quenching (QQ) activities. Seed biopriming and in vivo assays of tomato plants inoculated with strain P6 resulted in an increase in seedling height and weight. We detected QQ activity, involving enzymatic degradation of signal molecules in quorum sensing communication systems, against a broad range of N-acylhomoserine lactones (AHLs). HPLC-MRM data and phylogenetic analysis indicated that the QQ enzyme was an acylase. The QQ activity of strain P6 reduced soft rot symptoms caused by Dickeya solani, Pectobacterium atrosepticum and P. carotovorum on potato and carrot. In vivo assays showed that the PGP and QQ activities of strain P6 protect tomato plants against Pseudomonas syringae pv. tomato, indicating that strain P6 could have biotechnological applications. To our knowledge, this is the first report to show PGP and QQ activities in an indigenous Pseudomonas strain from Salicornia plants.


Subject(s)
Chenopodiaceae/chemistry , Pseudomonas/pathogenicity , Chromatography, High Pressure Liquid , Daucus carota/microbiology , Dickeya , Gammaproteobacteria/pathogenicity , Pectobacterium/pathogenicity , Pectobacterium carotovorum/pathogenicity , Pseudomonas syringae/pathogenicity , Quorum Sensing/physiology , Solanum tuberosum/microbiology
2.
Mar Biotechnol (NY) ; 21(2): 276-290, 2019 Apr.
Article in English | MEDLINE | ID: mdl-30762152

ABSTRACT

Many Gram-negative aquacultural and agricultural pathogens control virulence factor expression through a quorum-sensing (QS) mechanism involving the production of N-acylhomoserine (AHL) signalling molecules. Thus, the interruption of QS systems by the enzymatic degradation of signalling molecules, known as quorum quenching (QQ), has been proposed as a novel strategy to combat these infections. Given that the symbiotic bacteria of marine invertebrates are considered to be an important source of new bioactive molecules, this study explores the presence of AHL-degrading bacteria among 827 strains previously isolated from the microbiota of anemones and holothurians. Four of these strains (M3-1, M1-14, M3-13 and M9-54-2), belonging to the species Stenotrophomonas maltophilia, were selected on the basis of their ability to degrade a broad range of AHLs, and the enzymes involved in their activity were identified. Strain M9-54-2, which showed the strongest AHL-degrading activity, was selected for further study. High-performance liquid chromatography-mass-spectrometry confirmed that the QQ enzyme is not a lactonase. Strain M9-54-2 degraded AHL accumulation and reduced the production of enzymatic activity in Pectobacterium carotovorum CECT 225T and Vibrio coralliilyticus VibC-Oc-193 in in vitro co-cultivation experiments. The effect of AHL inactivation was confirmed by a reduction in potato tuber maceration and brine shrimp (Artemia salina) mortality caused by P. carotovorum and Vibrio coralliilyticus, respectively. This study strengthens the evidence of marine organisms as an underexplored and promising source of QQ enzymes, useful to prevent infections in aquaculture and agriculture. To our knowledge, this is the first time that anemones and holothurians have been studied for this purpose.


Subject(s)
Acyl-Butyrolactones/metabolism , Pectobacterium carotovorum/pathogenicity , Vibrio/pathogenicity , Virulence , Animals , Artemia/microbiology , Coculture Techniques , Holothuria/microbiology , Microbiota , Plant Diseases/microbiology , Quorum Sensing , Sea Anemones/microbiology , Solanum tuberosum/microbiology , Stenotrophomonas maltophilia , Vibrio Infections/metabolism
3.
Phytochemistry ; 159: 75-89, 2019 Mar.
Article in English | MEDLINE | ID: mdl-30597374

ABSTRACT

Solanum tuberosum, commonly known as the potato, is a worldwide food staple. During harvest, storage, and distribution the crop is at risk of mechanical damage. Wounding of the tuber skin can also become a point of entry for bacterial and fungal pathogens, resulting in substantial agricultural losses. Building on the proposal that potato tubers produce metabolites to defend against microbial infection during early stages of wound healing before protective suberized periderm tissues have developed, we assessed extracts of wound tissues from four potato cultivars with differing skin morphologies (Norkotah Russet, Atlantic, Chipeta, and Yukon Gold). These assays were conducted at 0, 1, 2, 3 and 7 days post wounding against the plant pathogen Erwinia carotovora and a non-pathogenic Escherichia coli strain that served as a control. For each of the potato cultivars, only polar wound tissue extracts demonstrated antibacterial activity. The polar extracts from earlier wound-healing time points (days 0, 1 and 2) displayed notably higher antibacterial activity against both strains than the later wound-healing stages (days 3 and 7). These results support a burst of antibacterial activity at early time points. Parallel metabolite profiling of the extracts revealed differences in chemical composition at different wound-healing time points and allowed for identification of potential marker compounds according to healing stage for each of the cultivars. It was possible to monitor the transformations in the metabolite profiles that could account for the phenomenon of temporal resistance by looking at the relative quantities of various metabolite classes as a function of time.


Subject(s)
Anti-Bacterial Agents/pharmacology , Pectobacterium carotovorum/drug effects , Plant Extracts/pharmacology , Plant Tubers/metabolism , Solanum tuberosum/metabolism , Wound Healing/drug effects , Alkaloids/metabolism , Amines/metabolism , Biomarkers/metabolism , Escherichia coli/physiology , Microbial Sensitivity Tests , Pectobacterium carotovorum/pathogenicity , Phenols/metabolism , Plant Tubers/microbiology , Solanum tuberosum/classification , Solanum tuberosum/microbiology , Species Specificity
4.
Microbiol Res ; 217: 23-33, 2018 Dec.
Article in English | MEDLINE | ID: mdl-30384906

ABSTRACT

Four hundred and fifty bacteria were evaluated for antagonistic activity against bacterial soft rot of potato caused by Pectobacterium carotovorum sp strain II16. A strain Ar10 exhibiting potent antagonist activity has been identified as Bacillus amyloliquefaciens on the basis of biochemical and molecular characterization. Cell free supernatant showed a broad spectrum of antibacterial activity against human and phytopathogenic bacteria in the range of 10-60 AU/mL. Incubation of P. carotovorum cells with increasing concentrations of the antibacterial compound showed a killing rate of 94.8 and 96% at MIC and 2xMIC respectively. In addition, the antibacterial agent did not exert haemolytic activity at the active concentration and has been preliminary characterized by TLC and GC-MS as a glycolipid compound. Treatment of potato tubers with strain Ar10 for 72 h significantly reduced the severity of disease symptoms (100 and 85.05% reduction of necrosis deep / area and weight loss respectively). The same levels in disease symptoms severity was also recorded following treatment of potato tubers with cell free supernatant for 1 h. Data suggest that protection against potato soft rot disease may be related to glycolipid production by strain Ar10. The present study affords new alternatives for anti-Pectobacterium carotovorum bioactive compounds against the soft rot disease of potato.


Subject(s)
Anti-Bacterial Agents/pharmacology , Bacillus amyloliquefaciens/metabolism , Biological Control Agents/antagonists & inhibitors , Glycolipids/antagonists & inhibitors , Pectobacterium carotovorum/drug effects , Plant Diseases/prevention & control , Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/isolation & purification , Anti-Bacterial Agents/metabolism , Bacillus amyloliquefaciens/classification , Bacillus amyloliquefaciens/genetics , Bacillus amyloliquefaciens/isolation & purification , Biological Control Agents/chemistry , Biological Control Agents/isolation & purification , Biological Control Agents/metabolism , Endophytes , Glycolipids/chemistry , Glycolipids/isolation & purification , Glycolipids/metabolism , Kinetics , Microbial Sensitivity Tests , Pectobacterium carotovorum/isolation & purification , Pectobacterium carotovorum/pathogenicity , Plant Diseases/microbiology , Plant Roots/drug effects , Plant Roots/microbiology , Solanum tuberosum/microbiology
5.
J Appl Microbiol ; 124(6): 1580-1588, 2018 Jun.
Article in English | MEDLINE | ID: mdl-29437273

ABSTRACT

AIMS: Isolation and characterization of pectolytic bacteria associated with soft rot disease of potatoes in Nakuru, Kenya, to provide the basis for the development of disease control measures. METHODS AND RESULTS: Potato tubers showing symptoms of soft rot were collected from different farms in Molo and Mau Narok regions within Nakuru county. Isolation was done using crystal violet pectate medium (CVPM). Out of the 71 isolates that showed growth on CVPM, pathogenicity tests revealed that 36 of them had the ability to macerate tissues of potato tubers. All the isolates yielded a fragment of approximately 1500 bp after 16S rDNA amplification. Using the BIOLOG microbial identification system, 20 bacterial isolates were identified as Pectobacterium carotovorum subsp. carotovorum, 7 were Pseudomonas fluorescens B while 9 were Ps. fluorescens A. Y1/Y2 primers successfully amplified pectate lyase-encoding (pel) gene, approximately 434 bp, in all the 20 P. carotovorum species. The virulence of the isolated strains to cause disease, according to pectinolytic tests, varied with change in incubation temperature of the test samples. Pectobacterium carotovorum strains were the most virulent at 30°C while disease severity due to infection by Ps. fluorescens A strains was high at 20°C compared to the other isolates. CONCLUSION: This study reveals the identity of pectolytic bacterial species from two genera, Pectobacterium and Pseudomonas, as causative agents of potato soft rot in Nakuru, Kenya. SIGNIFICANCE AND IMPACT OF THE STUDY: Research findings from this study will aid in developing suitable risk mitigation methods for adoption by farmers to prevent losses due to soft rot.


Subject(s)
Pectobacterium carotovorum , Plant Diseases/microbiology , Pseudomonas fluorescens , Solanum tuberosum/microbiology , Kenya , Pectobacterium carotovorum/genetics , Pectobacterium carotovorum/pathogenicity , Pseudomonas fluorescens/genetics , Pseudomonas fluorescens/pathogenicity
6.
Biochem Biophys Res Commun ; 496(2): 462-467, 2018 02 05.
Article in English | MEDLINE | ID: mdl-29337064

ABSTRACT

Chlorogenic acid (CGA) plays an important role in protecting plants against pathogens and promoting human health. Although CGA accumulates to high levels in potato tubers, the key enzyme p-coumaroyl quinate/shikimate 3'-hydroxylase (C3'H) for CGA biosynthesis has not been isolated and functionally characterized in potato. In this work, we cloned StC3'H from potato and showed that it catalyzed the formation of caffeoylshikimate and CGA (caffeoylquinate) from p-coumaroyl shikimate and p-coumaroyl quinate, respectively, but was inactive towards p-coumaric acid in in vitro enzyme assays. When the expression of StC3'H proteins was blocked through antisense (AS) inhibition under the control of a tuber-specific patatin promoter, moderate changes in tuber yield as well as phenolic metabolites in the core tuber tissue were observed for several AS lines. On the other hand, the AS and control potato lines exhibited similar responses to a bacterial pathogen Pectobacterium carotovorum. These results suggest that StC3'H is implicated in phenolic metabolism in potato. They also suggest that CGA accumulation in the core tissue of potato tubers is an intricately controlled process and that additional C3'H activity may also be involved in CGA biosynthesis in potato.


Subject(s)
Chlorogenic Acid/metabolism , Mixed Function Oxygenases/genetics , Plant Proteins/genetics , Plant Tubers/enzymology , Solanum tuberosum/enzymology , Carboxylic Ester Hydrolases/genetics , Carboxylic Ester Hydrolases/metabolism , Chlorogenic Acid/analogs & derivatives , Cloning, Molecular , Gene Expression , Mixed Function Oxygenases/antagonists & inhibitors , Mixed Function Oxygenases/metabolism , Oligonucleotides, Antisense/genetics , Oligonucleotides, Antisense/metabolism , Pectobacterium carotovorum/pathogenicity , Pectobacterium carotovorum/physiology , Pichia/genetics , Pichia/metabolism , Plant Proteins/metabolism , Plant Tubers/genetics , Plant Tubers/microbiology , Plants, Genetically Modified , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Shikimic Acid/analogs & derivatives , Shikimic Acid/metabolism , Solanum tuberosum/genetics , Solanum tuberosum/microbiology
7.
Mol Plant Pathol ; 19(1): 35-48, 2018 01.
Article in English | MEDLINE | ID: mdl-27671364

ABSTRACT

The identification of phytopathogen proteins that are differentially expressed during the course of the establishment of an infection is important to better understand the infection process. In vitro approaches, using plant extracts added to culture medium, have been used to identify such proteins, but the biological relevance of these findings for in planta infection are often uncertain until confirmed by in vivo studies. Here, we compared the proteins of Pectobacterium carotovorum ssp. carotovorum strain PccS1 differentially expressed in Luria-Bertani medium supplemented with extracts of the ornamental plant Zantedeschia elliotiana cultivar 'Black Magic' (in vitro) and in plant tissues (in vivo) by two-dimensional electrophoresis coupled with mass spectrometry. A total of 53 differentially expressed proteins (>1.5-fold) were identified (up-regulated or down-regulated in vitro, in vivo or both). Proteins that exhibited increased expression in vivo but not in vitro, or in both conditions, were identified, and deletions were made in a number of genes encoding these proteins, four of which (clpP, mreB, flgK and eda) led to a loss of virulence on Z. elliotiana, although clpP and mreB were later also shown to be reduced in growth in rich and minimal media. Although clpP, flgK and mreB have previously been reported as playing a role in virulence in plants, this is the first report of such a role for eda, which encodes 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, a key enzyme in Entner-Doudoroff metabolism. The results highlight the value of undertaking in vivo as well as in vitro approaches for the identification of new bacterial virulence factors.


Subject(s)
Bacterial Proteins/genetics , Gene Expression Regulation, Bacterial , Pectobacterium carotovorum/genetics , Pectobacterium carotovorum/pathogenicity , Plant Diseases/microbiology , Zantedeschia/microbiology , Amino Acid Sequence , Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Electrophoresis, Gel, Two-Dimensional , Genes, Bacterial , Mutation/genetics , Operon/genetics , Plant Diseases/genetics , Proteomics , RNA, Messenger/genetics , RNA, Messenger/metabolism , Tandem Mass Spectrometry , Transcription, Genetic , Up-Regulation/genetics , Virulence/genetics
8.
Microb Pathog ; 113: 348-356, 2017 Dec.
Article in English | MEDLINE | ID: mdl-29126952

ABSTRACT

Three bacterial isolates were isolated from infected potato tubers showing soft and brown rots like symptoms as well as one isolate from infected peach tree showing crown gall symptom. The morphological, biochemical and molecular assays proved that bacterial isolates belonging to Pectobacterium carotovorum subsp. carotovorum, Ralstonia solanacearum, Dickeya spp. and Agrobacterium tumefaciens. The acetone (AcE) and n-butanol (ButE) extracts of Callistemon viminalis flowers and essential oil from aerial parts of Conyza dioscoridis as well as ButE of Eucalyptus camaldulensis bark are evaluated at different concentrations against the growth of the isolated bacteria. The diameter of inhibition zone (IZ) and the minimum inhibitory concentrations (MICs) are compared. Results indicated that the highest IZ values were 20.0 mm and 18.3 mm for E. camaldulensis bark ButE and C. viminalis flower ButE, respectively, against P. carotovorum; 16.3 mm and 16.0 mm for E. camaldulensis bark ButE and C. viminalis flower ButE, respectively, against R. solanacearum; 18.5 mm for C. viminalis flower AcE and C. dioscoridis aerial parts EO against Dickeya spp.; and 15.0 mm for C. viminalis flower AcE against A. tumefaciens. MICs ranged from <16 µg/mL for D. solani to >4000 µg/mL for A. tumefaciens. It was proved that C. viminalis flowers AcE contains mainly 5-hydroxymethylfurfural (20.6%), palmitic acid (18.5%), and pyrogallol (16.4%); while C. viminalis flower ButE contains palmitic acid (36.3%), 2-hydroxymyristic acid (9.4%), 5-hydroxymethylfurfural (7.2%), and shikimic acid (6.6%); whereas E. camaldulensis bark ButE contains 8-nonynoic acid methyl ester (45.6), camphor (30.9%), menthol (8.8%), and 1,8-cineole (eucalyptol) (8.2%), whilst the EO of C. dioscoridis aerial parts comprises Z-(13,14-epoxy)tetradec-11-en-1-ol acetate (11.6%), γ-elemene (10.2%), tau.-muurolol (7.1%), and cadina-3,9-diene (4.7%). It can be concluded that phytochemical extracts of C. viminalis, E. camaldulensis and C. dioscoridis demonstrated strong to moderate antibacterial effects against the studied plant bacterial pathogens.


Subject(s)
Anti-Bacterial Agents/pharmacology , Bacteria/drug effects , Conyza/chemistry , Eucalyptus/chemistry , Myrtaceae/chemistry , Phytochemicals/pharmacology , Plant Extracts/pharmacology , Agrobacterium tumefaciens/drug effects , Agrobacterium tumefaciens/pathogenicity , Bacteria/isolation & purification , Bacteria/pathogenicity , Egypt , Flowers/chemistry , Microbial Sensitivity Tests , Oils, Volatile/pharmacology , Pectobacterium/drug effects , Pectobacterium/pathogenicity , Pectobacterium carotovorum/drug effects , Pectobacterium carotovorum/pathogenicity , Phytochemicals/chemistry , Plant Diseases/microbiology , Plant Oils/chemistry , Plant Oils/pharmacology , Plant Roots/microbiology , Ralstonia solanacearum/drug effects , Ralstonia solanacearum/pathogenicity , Solanum tuberosum/microbiology
9.
Phytopathology ; 107(11): 1322-1330, 2017 11.
Article in English | MEDLINE | ID: mdl-28853642

ABSTRACT

Pectobacterium carotovorum subsp. carotovorum strain PccS1, a bacterial pathogen causing soft rot disease of Zantedeschia elliotiana (colored calla), was investigated for virulence genes induced by the host plant. Using a promoter-trap transposon (mariner), we obtained 500 transposon mutants showing kanamycin resistance dependent on extract of Z. elliotiana. One of these mutants, PM86, exhibited attenuated virulence on both Z. elliotiana and Brassica rapa subsp. pekinensis. The growth of PM86 was also reduced in minimal medium (MM), and the reduction was restored by adding plant extract to the MM. The gene containing the insertion site was identified as rplY. The deletion mutant ΔrplY, exhibited reduced virulence, motility and plant cell wall-degrading enzyme production but not biofilm formation. Analysis of gene expression and reporter fusions revealed that the rplY gene in PccS1 is up-regulated at both the transcriptional and the translational levels in the presence of plant extract. Our results suggest that rplY is induced by Z. elliotiana extract and is crucial for virulence in P. carotovorum subsp. carotovorum.


Subject(s)
Bacterial Proteins/metabolism , Pectobacterium carotovorum/pathogenicity , Plant Extracts/pharmacology , Zantedeschia/chemistry , Amino Acid Sequence , Bacterial Proteins/genetics , Gene Expression Regulation, Bacterial/drug effects , Plant Extracts/chemistry , Virulence
10.
PLoS One ; 12(5): e0177647, 2017.
Article in English | MEDLINE | ID: mdl-28545065

ABSTRACT

Iron is an important nutrient for the survival and growth of many organisms. In order to survive, iron uptake from the environment must be strictly regulated and maintained to avoid iron toxicity. The ferric uptake regulator protein (Fur) regulates genes involved in iron homeostasis in many bacteria, including phytopathogens. However, to date, the role played by Fur in the biology of Pectobacterium carotovorum subsp. brasiliense (Pcb1692), an important pathogen of potatoes, has not yet been studied. To this end, we used the lambda recombineering method to generate a fur mutant strain of Pcb1692 and assessed the virulence and fitness of the mutant strain. The results showed that production of siderophores in Pcb1692Δfur increased compared to the Pcb1692 wild-type and the complemented strain Pcb1692Δfur-pfur. However, production of N-acyl homoserine lactone (AHLs), biofilm formation, exopolysaccharide (EPS) production, virulence on potato tubers and swimming motility, were all significantly decreased in Pcb1692Δfur compared to the wild-type and complemented Pcb1692Δfur-pfur strains. The Pcb1692Δfur mutant also demonstrated significant sensitivity to oxidative stress when exposed to H2O2. Consistent with phenotypic results, qRT-PCR results demonstrated that Fur down-regulates genes which encode proteins associated with: iron uptake (HasA-extracellular heme-binding protein and Ferrodoxin-AED-0004132), stress response (SodC-superoxide dismutase), plant cell wall degrading enzymes (PrtA and CelV) and motility (FlhC and MotA). We conclude that the ferric uptake regulator protein (Fur) of Pcb1692 regulates traits that are important to host-pathogens interactions.


Subject(s)
Bacterial Proteins/metabolism , Pectobacterium carotovorum/genetics , Pectobacterium carotovorum/pathogenicity , Repressor Proteins/metabolism , 4-Butyrolactone/analogs & derivatives , 4-Butyrolactone/metabolism , Bacterial Proteins/genetics , Biofilms/growth & development , Down-Regulation , Host-Pathogen Interactions , Hydrogen Peroxide/toxicity , Iron/metabolism , Mutagenesis , Oxidative Stress/drug effects , Pectobacterium carotovorum/metabolism , Repressor Proteins/genetics , Siderophores/metabolism , Solanum tuberosum/microbiology , Superoxide Dismutase/metabolism , Virulence/genetics
11.
Mol Plant Pathol ; 18(1): 32-44, 2017 01.
Article in English | MEDLINE | ID: mdl-26788858

ABSTRACT

Pectobacterium carotovorum ssp. brasiliense 1692 (Pcb1692) is an important emerging pathogen of potatoes causing blackleg in the field and soft rot during post-harvest storage. Blackleg diseases involve the bacterial colonization of vascular tissue and the formation of aggregates, also known as biofilms. To understand the role of quorum sensing in vascular colonization by Pcb1692, we generated a Pcb1692ΔexpI mutant strain. Inactivation of expI led to the reduced production of plant cell wall-degrading enzymes (PCWDEs), the inability to produce acyl homoserine lactone (AHL) and reduced virulence in potato tubers and stems. Complementation of the mutant strain with the wild-type expI gene in trans successfully restored AHL and PCWDE production as well as virulence. Transmission electron microscopy and in vitro motility assays demonstrated hyperpiliation and loss of flagella and swimming motility in the mutant strain compared with the wild-type Pcb1692. Furthermore, we noted that, in the early stages of infection, Pcb1692 wild-type cells had intact flagella which were shed at the later stages of infection. Confocal laser microscopy of PcbΔexpI-inoculated plants showed that the mutant strain tended to aggregate in intercellular spaces, but was unable to transit to xylem tissue. On the contrary, the wild-type strain was often observed forming aggregates within xylem tissue of potato stems. Gene expression analyses confirmed that flagella are part of the quorum sensing regulon, whereas fimbriae and pili appear to be negatively regulated by quorum sensing. The relative expression levels of other important putative virulence genes, such as those encoding different groups of PCWDEs, were down-regulated in the mutant compared with the wild-type strain.


Subject(s)
Mutation/genetics , Pectobacterium carotovorum/genetics , Pectobacterium carotovorum/pathogenicity , Plant Diseases/microbiology , Plant Stems/microbiology , Quorum Sensing/genetics , Solanum tuberosum/microbiology , Xylem/microbiology , Biological Assay , Disease Susceptibility , Flagella/metabolism , Flagella/ultrastructure , Gene Expression Profiling , Gene Expression Regulation, Bacterial , Genes, Bacterial , Pectobacterium carotovorum/ultrastructure , Plant Tubers/microbiology , Virulence/genetics
12.
BMC Genomics ; 17(1): 614, 2016 08 11.
Article in English | MEDLINE | ID: mdl-27515663

ABSTRACT

BACKGROUND: Long noncoding RNAs (lncRNAs) represent a class of RNA molecules that are implicated in regulation of gene expression in both mammals and plants. While much progress has been made in determining the biological functions of lncRNAs in mammals, the functional roles of lncRNAs in plants are still poorly understood. Specifically, the roles of long intergenic nocoding RNAs (lincRNAs) in plant defence responses are yet to be fully explored. RESULTS: In this study, we used strand-specific RNA sequencing to identify 1113 lincRNAs in potato (Solanum tuberosum) from stem tissues. The lincRNAs are expressed from all 12 potato chromosomes and generally smaller in size compared to protein-coding genes. Like in other plants, most potato lincRNAs possess single exons. A time-course RNA-seq analysis between a tolerant and a susceptible potato cultivar showed that 559 lincRNAs are responsive to Pectobacterium carotovorum subsp. brasiliense challenge compared to mock-inoculated controls. Moreover, coexpression analysis revealed that 17 of these lincRNAs are highly associated with 12 potato defence-related genes. CONCLUSIONS: Together, these results suggest that lincRNAs have potential functional roles in potato defence responses. Furthermore, this work provides the first library of potato lincRNAs and a set of novel lincRNAs implicated in potato defences against P. carotovorum subsp. brasiliense, a member of the soft rot Enterobacteriaceae phytopathogens.


Subject(s)
Disease Resistance/genetics , Gene Expression Regulation, Plant , Host-Pathogen Interactions , Pectobacterium carotovorum/pathogenicity , RNA, Long Noncoding/genetics , RNA, Plant/genetics , Solanum tuberosum/genetics , Chromosomes, Plant/chemistry , Exons , Gene Library , Gene Ontology , Molecular Sequence Annotation , Pectobacterium carotovorum/growth & development , Plant Diseases/genetics , Plant Diseases/immunology , Plant Diseases/microbiology , Plant Immunity/genetics , Plant Stems/genetics , Plant Stems/immunology , Plant Stems/microbiology , RNA, Long Noncoding/classification , RNA, Long Noncoding/immunology , RNA, Plant/classification , RNA, Plant/immunology , Solanum tuberosum/immunology , Solanum tuberosum/microbiology
13.
PLoS One ; 8(6): e65534, 2013.
Article in English | MEDLINE | ID: mdl-23755246

ABSTRACT

Pectobacterium species are enterobacterial plant-pathogens that cause soft rot disease in diverse plant species. Unlike hemi-biotrophic plant pathogenic bacteria, the type III secretion system (T3SS) of Pectobacterium carotovorum subsp. carotovorum (P. carotovorum) appears to secrete only one effector protein, DspE. Previously, we found that the T3SS regulator HrpL and the effector DspE are required for P. carotovorum pathogenesis on leaves. Here, we identified genes up-regulated by HrpL, visualized expression of dspE in leaves, and established that DspE causes host cell death. DspE required its full length and WxxxE-like motifs, which are characteristic of the AvrE-family effectors, for host cell death. We also examined expression in plant leaves and showed that hrpL is required for the expression of dspE and hrpN, and that the loss of a functional T3SS had unexpected effects on expression of other genes during leaf infection. These data support a model where P. carotovorum uses the T3SS early in leaf infection to initiate pathogenesis through elicitation of DspE-mediated host cell death.


Subject(s)
Bacterial Proteins/genetics , Chromosomes, Bacterial/chemistry , Gene Expression Regulation, Bacterial , Host-Pathogen Interactions , Pectobacterium carotovorum/genetics , Solanum tuberosum/microbiology , Virulence Factors/genetics , Agrobacterium tumefaciens/genetics , Agrobacterium tumefaciens/metabolism , Amino Acid Motifs , Arabidopsis/microbiology , Bacterial Proteins/metabolism , Cell Death , Genomic Islands , Molecular Sequence Data , Pectobacterium carotovorum/metabolism , Pectobacterium carotovorum/pathogenicity , Plant Cells/metabolism , Plant Cells/microbiology , Plant Cells/pathology , Plant Diseases/microbiology , Plant Leaves/microbiology , Sequence Alignment , Time Factors , Nicotiana/microbiology , Virulence Factors/metabolism
14.
Phytopathology ; 103(12): 1268-79, 2013 Dec.
Article in English | MEDLINE | ID: mdl-23758294

ABSTRACT

Pectobacterium carotovorum subsp. brasiliense is a newly identified member of the potato soft rot enterobacteriaceae. The pathogenesis of this pathogen is still poorly understood. In this study, an mCherry-P. carotovorum subsp. brasiliense-tagged strain was generated to study P. carotovorum subsp. brasiliense-potato plant interactions. Prior to use, the tagged strain was evaluated for in vitro growth, plasmid stability, and virulence on potato tubers and shown to be similar to the wild type. Four potato cultivars were evaluated for stem-based resistance against P. carotovorum subsp. brasiliense. Confocal laser-scanning microscopy and in vitro viable cell counts showed that P. carotovorum subsp. brasiliense is able to penetrate roots of a susceptible potato cultivar as early as 12 h postinoculation and migrate upward into aerial stem parts. Due to the phenotypic differences observed between tolerant and susceptible cultivars, a comparison of P. carotovorum subsp. brasiliense colonization patterns in these cultivars was undertaken. In the susceptible cultivar, P. carotovorum subsp. brasiliense cells colonized the xylem tissue, forming "biofilm-like" aggregates that led to occlusion of some of the vessels. In contrast, in the tolerant cultivar, P. carotovorum subsp. brasiliense appeared as free-swimming planktonic cells with no specific tissue localization. This suggests that there are resistance mechanisms in the tolerant cultivar that limit aggregation of P. carotovorum subsp. brasiliense in planta and, hence, the lack of symptom development in this cultivar.


Subject(s)
Disease Resistance , Disease Susceptibility , Pectobacterium carotovorum/pathogenicity , Plant Diseases/microbiology , Solanum tuberosum/microbiology , Luminescent Proteins , Microscopy, Confocal , Pectobacterium carotovorum/genetics , Pectobacterium carotovorum/growth & development , Phenotype , Plant Diseases/immunology , Plant Roots/immunology , Plant Roots/microbiology , Plant Stems/immunology , Plant Stems/microbiology , Plant Tubers/immunology , Plant Tubers/microbiology , Plasmids , Recombinant Fusion Proteins , Solanum tuberosum/immunology , Virulence , Red Fluorescent Protein
15.
World J Microbiol Biotechnol ; 28(1): 303-11, 2012 Jan.
Article in English | MEDLINE | ID: mdl-22806806

ABSTRACT

Pectobacterium carotovorum and Pectobacterium atrosepticum are dreadful causal agents of potato soft rot. Actually, there are no efficient bactericides used to protect potato against Pectobacterium spp. Biological control using actinobacteria could be an interesting approach to manage this disease. Thus, two hundred actinobacteria isolated from Moroccan habitats were tested for their ability to inhibit in vitro 4 environmental Pectobacterium strains and the two reference strains (P. carotovorum CFBP 5890 and P. atrosepticum CFBP 5889). Eight percent of these isolates were active against at least one of the tested pathogens and only 2% exhibited an antimicrobial activity against all tested Pectobacterium strains. Four bioactive isolates having the greatest pathogen inhibitory capabilities and classified as belonging to the genus Streptomyces species through 16S rDNA analysis were subsequently tested for their ability to reduce in vivo soft rot symptoms on potato slices of Bintje, Yukon Gold, Russet and Norland cultivars caused by the two pathogens P. carotovorum and P. atrosepticum. This test was carried out by using biomass inoculums and culture filtrate of the isolates as treatment. Among these, strain Streptomyces sp. OE7, reduced by 65-94% symptom severity caused by the two pathogens on potato slices. Streptomyces OE7 showed a potential for controlling soft rot on potato slices and could be useful in an integrated control program against potato soft rot pathogens in the objective to reduce treatments with chemical compounds.


Subject(s)
Actinobacteria/physiology , Biological Control Agents , Pectobacterium/pathogenicity , Plant Diseases/microbiology , Plant Diseases/prevention & control , Solanum tuberosum/microbiology , Actinobacteria/classification , Actinobacteria/genetics , Actinobacteria/isolation & purification , Base Sequence , DNA, Bacterial/genetics , Morocco , Pectobacterium carotovorum/pathogenicity , Phylogeny , Streptomyces/classification , Streptomyces/genetics , Streptomyces/isolation & purification , Streptomyces/physiology
16.
J Biotechnol ; 157(2): 334-43, 2012 Jan 20.
Article in English | MEDLINE | ID: mdl-22115953

ABSTRACT

Solanum tuberosum plants were transformed with three genetic constructions expressing the Nicotiana tabacum AP24 osmotine, Phyllomedusa sauvagii dermaseptin and Gallus gallus lysozyme, and with a double-transgene construction expressing the AP24 and lysozyme sequences. Re-transformation of dermaseptin-transformed plants with the AP24/lysozyme construction allowed selection of plants simultaneously expressing the three transgenes. Potato lines expressing individual transgenes or double- and triple-transgene combinations were assayed for resistance to Erwinia carotovora using whole-plant and tuber infection assays. Resistance levels for both infection tests compared consistently for most potato lines and allowed selection of highly resistant phenotypes. Higher resistance levels were found in lines carrying the dermaseptin and lysozyme sequences, indicating that theses proteins are the major contributors to antibacterial activity. Similar results were obtained in tuber infection tests conducted with Streptomyces scabies. Plant lines showing the higher resistance to bacterial infections were challenged with Phytophthora infestans, Rhizoctonia solani and Fusarium solani. Considerable levels of resistance to each of these pathogens were evidenced employing semi-quantitative tests based in detached-leaf inoculation, fungal growth inhibition and in vitro plant inoculation. On the basis of these results, we propose that stacking of these transgenes is a promising approach to achieve resistance to both bacterial and fungal pathogens.


Subject(s)
Amphibian Proteins/genetics , Antimicrobial Cationic Peptides/genetics , Plant Proteins/genetics , Plants, Genetically Modified/genetics , Solanum tuberosum/genetics , Amphibian Proteins/metabolism , Animals , Antimicrobial Cationic Peptides/metabolism , Bacteria/genetics , Chickens/genetics , Fungi/genetics , Gene Expression Regulation, Plant , Muramidase/genetics , Muramidase/metabolism , Pectobacterium carotovorum/pathogenicity , Plant Diseases/genetics , Plant Diseases/microbiology , Plant Proteins/metabolism , Solanum tuberosum/microbiology , Nicotiana/genetics
17.
PLoS One ; 6(8): e22974, 2011.
Article in English | MEDLINE | ID: mdl-21876734

ABSTRACT

Pectobacterium species are necrotrophic bacterial pathogens that cause soft rot diseases in potatoes and several other crops worldwide. Gene expression data identified Pectobacterium carotovorum subsp. carotovorum budB, which encodes the α-acetolactate synthase enzyme in the 2,3-butanediol pathway, as more highly expressed in potato tubers than potato stems. This pathway is of interest because volatiles produced by the 2,3-butanediol pathway have been shown to act as plant growth promoting molecules, insect attractants, and, in other bacterial species, affect virulence and fitness. Disruption of the 2,3-butanediol pathway reduced virulence of P. c. subsp. carotovorum WPP14 on potato tubers and impaired alkalinization of growth medium and potato tubers under anaerobic conditions. Alkalinization of the milieu via this pathway may aid in plant cell maceration since Pectobacterium pectate lyases are most active at alkaline pH.


Subject(s)
Acetoin/metabolism , Biosynthetic Pathways , Pectobacterium carotovorum/metabolism , Pectobacterium carotovorum/pathogenicity , Acetoin/pharmacology , Alkalies , Biosynthetic Pathways/drug effects , Butylene Glycols/pharmacology , Culture Media/pharmacology , Gene Expression Profiling , Gene Expression Regulation, Bacterial/drug effects , Genes, Bacterial/genetics , Hydrogen-Ion Concentration/drug effects , Mutation/genetics , Operon/genetics , Pectobacterium carotovorum/genetics , Pectobacterium carotovorum/growth & development , Plant Stems/drug effects , Plant Stems/microbiology , Plant Tubers/drug effects , Plant Tubers/microbiology , RNA, Messenger/genetics , RNA, Messenger/metabolism , Solanum tuberosum/drug effects , Solanum tuberosum/microbiology , Tissue Culture Techniques , Virulence/drug effects
18.
Microbiol Res ; 166(7): 578-84, 2011 Oct 20.
Article in English | MEDLINE | ID: mdl-21237629

ABSTRACT

The antimicrobial activity of samples of Northern Argentine propolis (Tucumán, Santiago del Estero and Chaco) against phytopathogenic bacteria was assessed and the most active samples were identified. Minimal inhibitory concentration (MIC) values were determined by agar macrodilution and broth microdilution assays. Strong antibacterial activity was detected against Erwinia carotovora spp carotovora CECT 225, Pseudomonas syringae pvar tomato CECT 126, Pseudomonas corrugata CECT 124 and Xanthomonas campestris pvar vesicatoria CECT 792. The most active propolis extract (Tucumán, T1) was selected to bioguide isolation and identified for antimicrobial compound (2',4'-dihydroxychalcone). The antibacterial chalcone was more active than the propolis ethanolic extract (MIC values of 0.5-1 µg ml(-1) and 9.5-15 µg ml(-1), respectively). Phytotoxicity assays were realized and the propolis extracts did not retard germination of lettuce seeds or the growth of onion roots. Propolis solutions applied as sprays on tomato fruits infected with P. syringae reduced the severity of disease. Application of the Argentine propolis extracts diluted with water may be promising for the management of post harvest diseases of fruits.


Subject(s)
Anti-Bacterial Agents/pharmacology , Chalcones/pharmacology , Pectobacterium carotovorum/drug effects , Plant Diseases/microbiology , Propolis/chemistry , Pseudomonas syringae/drug effects , Xanthomonas campestris/drug effects , Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/isolation & purification , Argentina , Chalcones/chemistry , Chalcones/isolation & purification , Lactuca/drug effects , Lactuca/growth & development , Solanum lycopersicum/microbiology , Microbial Sensitivity Tests , Onions/drug effects , Onions/growth & development , Pectobacterium carotovorum/pathogenicity , Plant Roots/drug effects , Pseudomonas syringae/pathogenicity , Seeds/drug effects , Xanthomonas campestris/pathogenicity
19.
Mol Plant Microbe Interact ; 24(4): 432-40, 2011 Apr.
Article in English | MEDLINE | ID: mdl-21171891

ABSTRACT

The ability of bacterial or fungal necrotrophs to produce enzymes capable of degrading pectin is often related to a successful initiation of the infective process. Pectin is synthesized in a highly methylesterified form and is subsequently de-esterified in muro by pectin methylesterase. De-esterification makes pectin more susceptible to the degradation by pectic enzymes such as endopolygalacturonases (endoPG) and pectate lyases secreted by necrotrophic pathogens during the first stages of infection. We show that, upon infection, Pectobacterium carotovorum and Botrytis cinerea induce in Arabidopsis a rapid expression of AtPME3 that acts as a susceptibility factor and is required for the initial colonization of the host tissue.


Subject(s)
Arabidopsis/enzymology , Arabidopsis/genetics , Botrytis/pathogenicity , Carboxylic Ester Hydrolases/metabolism , Gene Expression Regulation, Plant , Pectobacterium carotovorum/pathogenicity , Arabidopsis/microbiology , Arabidopsis Proteins/genetics , Arabidopsis Proteins/metabolism , Botrytis/growth & development , Carboxylic Ester Hydrolases/genetics , Cell Wall/metabolism , Mutation , Pectins/metabolism , Pectobacterium carotovorum/growth & development , Plant Diseases/genetics , Plant Diseases/microbiology , Plant Immunity/genetics , Plants, Genetically Modified/enzymology , Plants, Genetically Modified/genetics , Plants, Genetically Modified/metabolism , Plants, Genetically Modified/microbiology
20.
Phytopathology ; 101(2): 205-12, 2011 Feb.
Article in English | MEDLINE | ID: mdl-20839961

ABSTRACT

The concept that traits should be associated with related organisms and that nearby populations of the same species are likely to be more similar to each other than to populations spread far apart has long been accepted. Consequently, taxonomic relationships and biogeographical data are commonly believed to have the power to predict the distribution of disease resistance genes among plant species. In this study, we test claims of such predictivity in a group of widely distributed wild potato species. There was no clear association between resistance to soft rot and taxonomic relationships. However, we have found some associations between resistance to soft rot and environmental data such as annual precipitation and annual mean temperature. In addition, we have noted that high levels of resistance are mostly found in species with high levels of phenotypic plasticity. The three most resistant species were Solanum paucijugum, S. brevicaule, and S. commersonii.


Subject(s)
Environment , Host-Pathogen Interactions , Immunity, Innate/physiology , Multifactorial Inheritance , Pectobacterium carotovorum/pathogenicity , Plant Diseases/microbiology , Solanum/microbiology , DNA, Plant , Genetic Testing , Geography , Immunity, Innate/genetics , Phenotype , Plant Diseases/genetics , Solanum/classification , Solanum/genetics , Species Specificity
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