Identification of Pueraria spp. through DNA barcoding and comparative transcriptomics.

BACKGROUND: Kudzu is a term used generically to describe members of the genus Pueraria. Kudzu roots have been used for centuries in traditional Chinese medicine in view of their high levels of beneficial isoflavones including the unique 8-C-glycoside of daidzein, puerarin. In the US, kudzu is seen as a noxious weed causing ecological and economic damage. However, not all kudzu species make puerarin or are equally invasive. Kudzu remains difficult to identify due to its diverse morphology and inconsistent nomenclature. RESULTS: We have generated sequences for the internal transcribed spacer 2 (ITS2) and maturase K (matK) regions of Pueraria montana lobata, P. montana montana, and P. phaseoloides, and identified two accessions previously used for differential analysis of puerarin biosynthesis as P. lobata and P. phaseoloides. Additionally, we have generated root transcriptomes for the puerarin-producing P. m. lobata and the non-puerarin producing P. phaseoloides. Within the transcriptomes, microsatellites were identified to aid in species identification as well as population diversity. CONCLUSIONS: The barcode sequences generated will aid in fast and efficient identification of the three kudzu species. Additionally, the microsatellites identified from the transcriptomes will aid in genetic analysis. The root transcriptomes also provide a molecular toolkit for comparative gene expression analysis towards elucidation of the biosynthesis of kudzu phytochemicals.

Percepción etnobotánica de los campesinos sobre la flora arvense en fincas de la agricultura suburbana en Santiago de Cuba, Cuba / Ethnobotanical perception of the farmers about the weed flora in farms of suburban agriculture in Santiago de Cuba, Cuba

Currently the weed species are a resource to conserve. The objective was to evaluate the ethnobotanical perception of the peasants about the weed flora in farms of suburban agriculture in Santiago de Cuba, Cuba. An ethnobotanical study was developed and the percentage of known species, percentage of species per management action and the percentage of weed species with potential utility was determined. The spectrum of use, the categories of use and the species richness by category were also taken into account. The weed species found in each of the farms were identified by at least 60% of the producers conferring more than 70% of this flora potential utilities such as medicinal, animal feed and agricultural. Although different forms of management for these species were identified, more than 40% are eliminated regardless of the potential benefits that productive systems can bring to this.

Actualmente las especies arvenses son un recurso a conservar. El objetivo fue evaluar la percepción etnobotánica de los campesinos sobre la flora arvense en fincas de la agricultura suburbana en Santiago de Cuba, Cuba. Se desarrolló un estudio etnobotánico y se determinó el porcentaje de especies conocidas, porcentaje de especies por acción de manejo y el porcentaje de especies arvenses con utilidad potencial. También se tuvo en cuenta el espectro de uso, las categorías de uso y la riqueza de especies por categoría. Las especies arvenses que se encuentran en cada una de las fincas fueron identificadas por al menos el 60% de los productores confiriéndoles a más del 70% de esta flora utilidades potenciales como medicinal, alimento animal y agrícola. Aunque se identificaron diferentes formas de manejo para estas especies, más del 40% resultan eliminadas independientemente de los beneficios potenciales que puedan aportar a estos sistemas productivos.

Surveys in the Chrysanthemum Production Areas of Brazil and Colombia Reveal That Weeds Are Potential Reservoirs of Chrysanthemum Stunt Viroid.

The stunting disease, incited by chrysanthemum stunt viroid (CSVd), has become a serious problem in chrysanthemum production areas worldwide. Here we identified 46 weed species from chrysanthemum fields in two producing regions of the State of São Paulo, Brazil. The mechanical inoculation of these weeds with a Brazilian CSVd isolate revealed that this viroid was able to infect 17 of these species, in addition to chrysanthemum, tomato and potato. Plants of Oxalis latifolia and chrysanthemum naturally infected with CSVd were found in chrysanthemum fields in Colombia, which is the first CSVd report in that country. Therefore, weeds have the potential to act as reservoirs of CSVd in the field. These results are the first reports of experimental CSVd infection in the following species: Amaranthus viridis, Cardamine bonariensis, Chamaesyce hirta, Conyza bonariensis, Digitaria sanguinalis, Gomphrena globosa, Helianthus annuus, Lupinus polyphyllus, Mirabilis jalapa, Oxalis latifolia, Portulaca oleracea and Catharanthus roseus. The phylogenetic analyses of the CSVd variants identified herein showed three groups with Brazilian CSVd variants distributed in them all, which suggests that Brazilian CSVd isolates may have different origins through successive introductions of infected germplasm of chrysanthemum in Brazil.

Comparative chloroplast genomics between the invasive weed Mikania micrantha and its indigenous congener Mikania cordata: Structure variation, identification of highly divergent regions, divergence time estimation, and phylogenetic analysis.

Mikania micrantha and Mikania cordata are the only two species in genus Mikania (Asteraceae) in China. They share very similar morphological and life-history characteristics but occupy quite different habitats. Most importantly, they generate totally different ecological consequences. While M. micrantha has become an exotic invasive weed, M. cordata exists as an indigenous species with no harmful effects on native plants or habitats. As a continuous study of our previously reported M. micrantha chloroplast (cp) genome, in this study we have further sequenced the M. cordata cp genome to (1) conduct a comparative genome analysis to gain insights into the mechanism of invasiveness; (2) develop cp markers to examine the population genetic adaptation of M. micrantha; and (3) screen variable genome regions of phylogenetic utility. The M. cordata chloroplast genome is 151,984 bp in length and displays a typical quadripartite structure. The number and distribution of protein coding genes, tRNA genes, and rRNA genes of M. cordata are identical to those of M. micrantha. The main difference lays in that the pseudogenization of ndhF and a 118-bp palindromic repeat only arises in M. cordata. Fourteen highly divergent regions, 235 base substitutions, and 58 indels were identified between the two cp genomes. Phylogenetic inferences revealed a sister relationship between M. micrantha and M. cordata whose divergence was estimated to occur around 1.78 million years ago (MYA). Twelve cpSSR loci were detected to be polymorphic and adopted to survey the genetic adaptation of M. micrantha populations. No cpSSR loci were found to undergo selection. Our results build a foundation to examine the invasive mechanism of Mikania weed.

Effect of long-term fertilisation on the weed community of a winter wheat field.

Effects of fertilisation and other management techniques on a weed community were evaluated during wheat growth in a rice-wheat cropping system. Fertiliser treatments were C0 (C means chemical, C0 means zero chemical fertiliser.), CN (N fertiliser), CNK (N plus K fertiliser), CNPK (N plus P and K fertiliser), CNP (N plus P fertiliser), and CPK (P plus K fertiliser). Weed density, biomass, and bio-diversity were determined. Redundancy analysis (RDA) was used to investigate the relationship between fertiliser management, weed species, and weed density. The overall weed densities in the C0 and CPK treatments were the greatest during wheat seeding and ripening periods and were significantly greater than densities in the other treatments. N, P and organic matter in soil were highly correlated with weed species and density, whereas K in soil was not significantly correlated with weed species and weed density. N fertiliser significantly reduced weed density. Balanced fertilisation maintained weed species richness and resulting in a high yield of wheat. CNPK application reduced weed damage and improved the productivity and stability of the farmland ecosystem.

Mapping allergenic pollen vegetation in UK to study environmental exposure and human health.

Allergenic pollen is produced by the flowers of a number of trees, grasses and weeds found throughout the UK. Exposure to such pollen grains can exacerbate pollen-related asthma and allergenic conditions such as allergic rhinitis (hay fever). Maps showing the location of these allergenic taxa have many applications: they can be used to provide advice on risk assessments; combined with health data to inform research on health impacts such as respiratory hospital admissions; combined with weather data to improve pollen forecasting systems; or as inputs to pollen emission models. In this study we present 1km resolution maps of 12 taxa of trees, grass and weeds found in the UK. We have selected the main species recorded by the UK pollen network. The taxa mapped in this study were: Alnus (alder), Fraxinus (ash), Betula (birch), Corylus (hazel), Quercus (oak), Pinus (pine) and Salix (willow), Poaceae (grass), Artemisia (mugwort), Plantago (plantain), Rumex (dock, sorrels) and Urtica (nettle). We also focus on one high population centre and present maps showing local level detail around the city of London. Our results show the different geographical distributions of the 12 taxa of trees, weeds and grass, which can be used to study plants in the UK associated with allergy and allergic asthma. These maps have been produced in order to study environmental exposure and human health, although there are many possible applications. This novel method not only provides maps of many different plant types, but also at high resolution across regions of the UK, and we uniquely present 12 key plant taxa using a consistent methodology. To consider the impact on human health due to exposure of the pollen grains, it is important to consider the timing of pollen release, and its dispersal, as well as the effect on air quality, which is also discussed here.

A survey of herbal weeds for treating skin disorders from Southern Thailand: Songkhla and Krabi Province.

ETHNOPHARMACOLOGICAL RELEVANCE: Skin diseases are common health problems which affecting to all ages. In Thailand, the number of patients diagnosed with skin diseases is increasing every year. Nowadays, The Ministry of Public Health is supporting and promoting herbs for treating various disorders, including disorders of the skin to reduce the problem of antibiotic resistance and adverse drug reactions. This study aimed to: (1) enumerate the herbal weeds for treating skin disorders; (2) study local knowledge of weed utilization for treating skin disorders according to the folk healers in Songkhla and Krabi province; and (3) study quantitative data by Informant consensus factor (ICF), Use value (UV) and Fidelity level (FL) value. MATERIALS AND METHODS: Field surveys and Semi-structured interviews about the local names, parts of plants used, preparation and use method, as well as local properties were done. The data were further analyzed by descriptive statistics, interpretation and quantitative indexes (ICF, UV as well as FL). RESULTS: The results discovered 44 herbal species of weeds belonging to 41 genera in 25 families. The most used plant families were Amaranthaceae (6 species). Most plants were used to treat abscess (18 species; 40.91%). The highest UV was recorded for Commelina benghalensis (0.65). The highest ICF values were found in vitiligo, ringworm, tinea versicolor and burns (1.00 each). The highest FL values were recorded for Cleome gynandra, Cleome viscosa, Sphenoclea zeylanica, Acmella oleracea, Leersia hexandra, Cyperus involucratus, Phyllanthus urinaria and Iresine herbstii (100.00 each). A review of the literatures revealed that 34 plant species had already been tested for their pharmacological activities. The biological activities associated with treatment of skin diseases can be divided into four categories: antimicrobial, anti-inflammatory, wound healing and antioxidant activity. CONCLUSION: The information indicates that herbal weedy utilization is still importance to the treatment of traditional healers through accumulated experience for a long time. Therefore, this study is a guide to the conservation of folk medicinal knowledge. It might be implied as the basis for drug development and application of herbal weeds to treat skin disorders along with promoting sustainable use of natural resource.

Biodiversity and importance of floating weeds of Dara Ismail, Khan District of KPK, Pakistan.

The present paper is based on the results of taxonomic research work conducted in Dera Ismail Khan District of KPK, Pakistan, during 2005 - 2007. The area was extensively surveyed in order to collect floating aquatic weeds. From the study area 11 floating aquatic weed species belonging to 9 genera and 9 families were collected and identified in the light of available literature. These plants include Bryophytes: 1 species, Ricciocarpus natans (L.) Corda; Pteridophytes: 2 species, Azolla pinnata R.Br. and Marselia quadrifolia L., and Spermatophytes: 8 species, Lemna aequinoctialis Welw., L. gibba L., Marselia quadrifoliata L. Nelumbo nucifera Gaerth., Nymphoides cristata (Roxb.) O. Ketze. Nymphoides indica (L.) Kuntze:, Pistia stratiotes L. Potamogeton nodosus Poiret and Spirodela polyrrhiza (L.) Schleid. Floating weeds on one hand cause serious problems and on the other hand they are used for various purposes. Data inventory consists of botanical name, family, major group, habit and habitat, flowering period, availability, distribution in D.I.Khan, Pakistan and world, beneficial and harmful effects. Key to the floating aquatic species of the area was developed for easy and correct identification and differentiation.