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1.
Mech Ageing Dev ; 184: 111150, 2019 12.
Article in English | MEDLINE | ID: mdl-31574270

ABSTRACT

In most species, females live longer than males. An understanding of this female longevity advantage will likely uncover novel anti-aging therapeutic targets. Here we investigated the transcriptomic responses in the hypothalamus - a key organ for somatic aging control - to the introduction of a simple aging-related molecular perturbation, i.e. GIT2 heterozygosity. Our previous work has demonstrated that GIT2 acts as a network controller of aging. A similar number of both total (1079-female, 1006-male) and gender-unique (577-female, 527-male) transcripts were significantly altered in response to GIT2 heterozygosity in early life-stage (2 month-old) mice. Despite a similar volume of transcriptomic disruption in females and males, a considerably stronger dataset coherency and functional annotation representation was observed for females. It was also evident that female mice possessed a greater resilience to pro-aging signaling pathways compared to males. Using a highly data-dependent natural language processing informatics pipeline, we identified novel functional data clusters that were connected by a coherent group of multifunctional transcripts. From these it was clear that females prioritized metabolic activity preservation compared to males to mitigate this pro-aging perturbation. These findings were corroborated by somatic metabolism analyses of living animals, demonstrating the efficacy of our new informatics pipeline.


Subject(s)
Aging/genetics , Aging/physiology , GTPase-Activating Proteins/genetics , GTPase-Activating Proteins/physiology , Hypothalamus/metabolism , Animals , Cluster Analysis , Computational Biology , Female , Longevity/genetics , Longevity/physiology , Male , Mice , Mice, Inbred C57BL , RNA/biosynthesis , RNA/genetics , Sex Characteristics , Signal Transduction/genetics , Signal Transduction/physiology , Transcriptome
2.
Clin Pharmacol Ther ; 103(3): 511-520, 2018 03.
Article in English | MEDLINE | ID: mdl-28643328

ABSTRACT

As drug development is extremely expensive, the identification of novel indications for in-market drugs is financially attractive. Multiple algorithms are used to support such drug repurposing, but highly reliable methods combining simulation of intracellular networks and machine learning are currently not available. We developed an algorithm that simulates drug effects on the flow of information through protein-protein interaction networks, and used support vector machine to identify potentially effective drugs in our model disease, psoriasis. Using this method, we screened about 1,500 marketed and investigational substances, identified 51 drugs that were potentially effective, and selected three of them for experimental confirmation. All drugs inhibited tumor necrosis factor alpha-induced nuclear factor kappa B activity in vitro, suggesting they might be effective for treating psoriasis in humans. Additionally, these drugs significantly inhibited imiquimod-induced ear thickening and inflammation in the mouse model of the disease. All results suggest high prediction performance for the algorithm.


Subject(s)
Drug Repositioning/methods , Gene Regulatory Networks/genetics , Protein Interaction Domains and Motifs , Protein Interaction Maps , Algorithms , Animals , Cell Line , Computer Simulation , Dermatitis/drug therapy , Drug Evaluation, Preclinical , Ear, External/pathology , Humans , Imiquimod , Machine Learning , Mice , Mice, Inbred BALB C , NF-kappa B/drug effects , Psoriasis/chemically induced , Psoriasis/drug therapy , RNA/biosynthesis , RNA/genetics , Support Vector Machine , Tumor Necrosis Factor-alpha/antagonists & inhibitors
3.
Nucleic Acids Res ; 45(12): e109, 2017 Jul 07.
Article in English | MEDLINE | ID: mdl-28398514

ABSTRACT

RNA folding during transcription directs an order of folding that can determine RNA structure and function. However, the experimental study of cotranscriptional RNA folding has been limited by the lack of easily approachable methods that can interrogate nascent RNA structure at nucleotide resolution. To address this, we previously developed cotranscriptional selective 2΄-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq) to simultaneously probe all intermediate RNA transcripts during transcription by stalling elongation complexes at catalytically dead EcoRIE111Q roadblocks. While effective, the distribution of elongation complexes using EcoRIE111Q requires laborious PCR using many different oligonucleotides for each sequence analyzed. Here, we improve the broad applicability of cotranscriptional SHAPE-Seq by developing a sequence-independent biotin-streptavidin (SAv) roadblocking strategy that simplifies the preparation of roadblocking DNA templates. We first determine the properties of biotin-SAv roadblocks. We then show that randomly distributed biotin-SAv roadblocks can be used in cotranscriptional SHAPE-Seq experiments to identify the same RNA structural transitions related to a riboswitch decision-making process that we previously identified using EcoRIE111Q. Lastly, we find that EcoRIE111Q maps nascent RNA structure to specific transcript lengths more precisely than biotin-SAv and propose guidelines to leverage the complementary strengths of each transcription roadblock in cotranscriptional SHAPE-Seq.


Subject(s)
Biotin/chemistry , Chemistry Techniques, Analytical , RNA Folding , RNA/chemistry , Streptavidin/chemistry , Transcription, Genetic , Acylation , Base Pairing , Base Sequence , Biotin/genetics , DNA Primers/chemistry , DNA Primers/genetics , Deoxyribonuclease EcoRI/chemistry , Deoxyribonuclease EcoRI/genetics , Hydroxides/chemistry , Nucleic Acid Conformation , RNA/biosynthesis , RNA/genetics , Riboswitch , Sequence Analysis, RNA , Streptavidin/genetics
4.
J Chem Neuroanat ; 80: 1-10, 2017 03.
Article in English | MEDLINE | ID: mdl-27919828

ABSTRACT

Parkinson's disease is one of the most common neurodegenerative disease found in aged peoples. Plentiful studies are being conducted to find a suitable and effective cure for this disease giving special impetus on use of herbal plants. The study aimed at investigating the effect of ethanolic extract of Mucuna pruriens (Mp) on level of nitric oxide (NO) in paraquat (PQ) induced Parkinson's disease (PD) mouse model and its subsequent contribution to lipid peroxidation. Twenty four Swiss albino mice were divided into three groups; Control, PQ and PQ+Mp. PQ doses were given intraperitoneally, twice in a week and oral dose of ethanolic extract of Mp seed was given for 9 weeks. Nitrite content and lipid peroxidation was measured in all treated groups along with respective controls. RNA was isolated from the nigrostriatal tissue of control and the treated mice and was reverse transcribed into cDNA. PCR was performed to amplify iNOS mRNA and western blot analysis was performed to check its protein level. We had also perfused the mice in all treated group and performed Tyrosine hydroxylase (TH) and iNOS immunoreactivity in substantia nigra region of mice brain. PQ-treatment increased nitrite content, expression of iNOS and lipid peroxidation compared to respective controls. Mp treatment resulted in a significant attenuation of iNOS expression, nitrite content and lipid peroxidation demonstrating that it reduces nitric oxide in PQ-induced Parkinson's disease. Interestingly; we also observed that mRNA, protein expression and immunoreactivity of iNOS was significantly decreased after Mp treatment and TH immunoreactivity was significantly improved after the treatment of Mp. Our results demonstrated that Mp protects the dopaminergic neurons from the NO injury in substantia nigra.


Subject(s)
Mucuna/chemistry , Nitric Oxide Synthase Type II/antagonists & inhibitors , Nitric Oxide Synthase Type II/biosynthesis , Parkinson Disease, Secondary/enzymology , Plant Extracts/pharmacology , Animals , Behavior, Animal/drug effects , Corpus Striatum/drug effects , Corpus Striatum/enzymology , Lipid Peroxidation/drug effects , Male , Mice , Mice, Inbred C57BL , Nitric Oxide/metabolism , Nitrites/metabolism , Paraquat , Parkinson Disease, Secondary/chemically induced , Parkinson Disease, Secondary/psychology , RNA/biosynthesis , RNA, Messenger/biosynthesis , RNA, Messenger/genetics , Substantia Nigra/drug effects , Substantia Nigra/enzymology , Tyrosine 3-Monooxygenase/metabolism
5.
Phytomedicine ; 23(12): 1301-1311, 2016 Nov 15.
Article in English | MEDLINE | ID: mdl-27765349

ABSTRACT

BACKGROUND: Metabolic syndrome is a set of pathologies among which stand out the obesity, which is related to the lipid droplet accumulation and changes to cellular morphology regulated by several molecules and transcription factors. Maslinic acid (MA) is a natural product with demonstrated pharmacological functions including anti-inflammation, anti-tumor and anti-oxidation, among others. PURPOSE: Here we report the effects of MA on the adipogenesis process in 3T3-L1 cells. METHODS: Cell viability, glucose uptake, cytoplasmic triglyceride droplets, triglycerides quantification, gene transcription factors such as peroxisome proliferator-activated receptor γ (PPARγ) and adipocyte fatty acid-binding protein (aP2) and intracellular Ca2+ levels were determined in pre-adipocytes and adipocytes of 3T3-L1 cells. RESULTS: MA increased glucose uptake. MA also decreased lipid droplets and triglyceride levels, which is in concordance with the down-regulation of PPARγ and aP2. Finally, MA increased the intracellular Ca2+ concentration, which could also be involved in the demonstrated antiadipogenic effect of this triterpene. CONCLUSION: MA has been demonstrated as potential antiadipogenic compound in 3T3-L1 cells.


Subject(s)
Adipocytes/drug effects , Adipogenesis/drug effects , Cell Differentiation/drug effects , Olea/chemistry , Triterpenes/pharmacology , 3T3-L1 Cells , Animals , Calcium/metabolism , Cell Survival/drug effects , Fatty Acid-Binding Proteins/biosynthesis , Fatty Acid-Binding Proteins/genetics , Glucose/metabolism , Mice , PPAR gamma/genetics , RNA/biosynthesis , RNA/genetics , Triglycerides/metabolism , Triterpenes/chemistry
6.
Life Sci ; 146: 184-91, 2016 Feb 01.
Article in English | MEDLINE | ID: mdl-26739509

ABSTRACT

AIMS: Leydig cells are characterized by their ability to produce testosterone. When the Leydig cells are unable to produce enough testosterone, spermatogenesis fails completely. Considering this, it is of great interest to investigate whether the expressions of steroidogenic enzymes are affected by testicular heat stress. This study aimed to demonstrate that heat induced ER-stress significantly influences steroidogenic enzyme expression and testosterone production in the Leydig cells. MAIN METHODS: C57BL/6 mice were subjected to repetitive testicular heat-treatment at 42 °C for 15 min per day, and heat-treated mLTC-1 cells following hCG treatment for 1h. The protein and RNA expressions were measured by Western blot, RT-PCR. The testosterone and progesterone levels were detected by EIA. The histological and pathological characteristics using hematoxylin and eosin (H&E) and antibody stains. KEY FINDINGS: The 3ß-HSD expression was decreased by heat-stress and hCG treatment. While the GRP78/BiP and CHOP levels were increased by ER-stress inducers, those of the steroidogenic enzyme and progesterone were decreased. In contrast, an ER-stress inhibitor rescued the testosterone levels, even under heat-stress conditions. Moreover, the Leydig cells were randomly scattered, and severely damaged upon repetitive testicular heat-treatment. Additionally, immunohistochemical analyses revealed that cleaved caspase-3 was elevated in the testicular Leydig cells, and rescued by TUDCA. Thus, repetitive testicular heat-treatment in mice promotes excessive ER-stress, thereby leading to apoptosis of the Leydig cells and thus, decreased testosterone production. SIGNIFICANCE: Our findings help to provide an ER-stress mediate mechanistic explanation to the impairment of spermatogenesis upon elevation of the testicular temperature.


Subject(s)
Endoplasmic Reticulum Stress , Hyperthermia, Induced , Leydig Cell Tumor/metabolism , Testosterone/biosynthesis , 3-Hydroxysteroid Dehydrogenases/metabolism , Animals , Apoptosis/drug effects , Caspase 3/metabolism , Cell Line, Tumor , Chorionic Gonadotropin/pharmacology , Endoplasmic Reticulum Chaperone BiP , Heat-Shock Proteins/biosynthesis , Hot Temperature , Male , Mice , Mice, Inbred C57BL , Progesterone/biosynthesis , RNA/biosynthesis , Steroids/biosynthesis , Transcription Factor CHOP/biosynthesis
7.
Biol Trace Elem Res ; 169(2): 218-29, 2016 Feb.
Article in English | MEDLINE | ID: mdl-26113309

ABSTRACT

Arsenic (As), a toxic metalloid, is one of the major global concerns. The toxicity resulting from As exposure is linked to the generation of reactive oxygen intermediates during their redox cycling and metabolic activation processes that cause lipid peroxidation (LPO). Zinc (Zn), a redox-inactive metal, helps to maintain cellular functions because of its prominent role in antioxidant network through multiple mechanisms. The present study, therefore, explores the effectiveness of administered Zn to combat against acute As toxicity by analysis of antioxidant defense status, alkaline phosphatase (ALP) activity, histological profile, MT expression, and elemental status in rat liver. To achieve this goal, four experimental groups, one control and three receiving different metal supplementations, were chosen (group 1, control; group 2, Zn supplemented; group 3, As substituted; group 4, Zn + As supplemented). The levels of reduced glutathione (GSH) and activities of glutathione reductase (GR) and ALP were lowered, whereas LPO levels and activity of superoxide dismutase (SOD) were elevated with no significant change in catalase (CAT) activity. Histopathological changes were also observed in the As substituted group in comparison to the control. Particle-induced X-ray emission (PIXE) analysis showed decrease in Fe and S concentration in rat liver after As intoxication, whereas As was below detection limit, i.e., <1 ppm. Zn administration almost restored the antioxidants, ALP activity, histopathological changes, and elemental status. A cumulative increase in MT expression was found with the combined treatment of Zn and As. Also, Zn alone caused no significant change in the antioxidant defense system. It can be concluded that restoration of antioxidant activity and increased MT expression are the two independent protective mechanisms of Zn to reduce acute As toxicity.


Subject(s)
Antioxidants/metabolism , Arsenites/toxicity , Liver/drug effects , Metallothionein/biosynthesis , Oxidative Stress/drug effects , Sodium Compounds/toxicity , Zinc Sulfate/pharmacology , Animals , Lipid Peroxidation/drug effects , Liver/enzymology , Liver/pathology , Male , RNA/biosynthesis , Rats, Sprague-Dawley , Spectrometry, X-Ray Emission
8.
Eur J Histochem ; 59(2): 2486, 2015 Apr 21.
Article in English | MEDLINE | ID: mdl-26150157

ABSTRACT

Inositol 1, 4, 5-trisphosphate receptor (IP3R) has been established to be essential for hearing. However, the expression of IP3R in the cochlea in the period of auditory development remains unknown. We investigated the expression of IP3R in the developing rat cochlea using immunohistochemistry and real-time reverse transcription polymerase chain reaction (RT-PCR). We observed its presence in the developing rat cochlea, and changes in IP3R protein expressions from the early post-natal period to adult. At birth (post-natal day 0, P0), IP3R expression was only found in Hensen's cell. IP3R immunoreactivity first appeared in the sensory hair cells in the organ of Corti at P2. This localization was confirmed by means of double-labeling experiments with Myosin VIIA, a marker for cochlear hair cells. Colocalization of IP3R and Myosin VIIA from P2 to the second post-natal week suggested early expression of IP3R in developing inner and outer hair cells. Claudius' cells near the spiral ligament were labelled for IP3R from P8 onwards. Transient IP3R expression was observed in the stria vascularis in early post-natal rat from P4 to P8. Spiral ganglion neurons also exhibited weaker IP3R fluorescence signals during post-natal development. The results of RT-PCR demonstrated that all three IP3R isoforms (IP3R1, IP3R2, and IP3R3) were present in rat cochlea during four different developmental stages of cochlea, from P0 to P28. Present immunohistochemical evidence for both change and maintenance of expression of IP3R during post-natal development of the rat cochlea indicated the possible involvement of IP3R-mediated calcium signaling in cochlear development.


Subject(s)
Cochlea/growth & development , Cochlea/metabolism , Inositol 1,4,5-Trisphosphate Receptors/metabolism , Animals , Blotting, Western , Calcium Signaling/physiology , Female , Hair Cells, Auditory, Inner/metabolism , Immunohistochemistry , Male , Microscopy, Confocal , Myosin VIIa , Myosins/metabolism , Organ of Corti/growth & development , Organ of Corti/metabolism , RNA/biosynthesis , RNA/isolation & purification , Rats , Rats, Sprague-Dawley , Spiral Ganglion/growth & development , Spiral Ganglion/metabolism , Stria Vascularis/metabolism
9.
C R Biol ; 338(5): 314-20, 2015 May.
Article in English | MEDLINE | ID: mdl-25882350

ABSTRACT

Exploiting the annotation of the western clawed frog Silurana tropicalis genome, we identified a new metallothionein (MT) gene, exhibiting all the features to be considered an active gene, but with an atypical coding region, showing only 17 cysteine residues instead of the canonical 20 cysteines of vertebrate metallothioneins and two anomalous cysteine triplets. However, the presence of a gene in the genome does not ensure its effective expression. By using conventional and Real-Time PCR analyses, we demonstrated that this atypical MT is constitutively expressed throughout the life cycle of the African clawed frog Xenopus laevis; moreover, this gene is highly expressed in the adult liver, the major site of MT expression and synthesis in vertebrates. To our knowledge, the X. laevis MT described in this paper is the first sequence of a vertebrate MT showing only 17 cysteine residues, arranged in two Cys-Cys-Cys motifs. Phylogenetic analyses also demonstrated that the atypical X. laevis MT merges in the anuran clade, but is the most derived sequence among tetrapods MTs. Finally, Tajima's Relative Rate Test suggested a different evolutionary rate between the canonical X. laevis MT and this novel isoform.


Subject(s)
Gene Expression Regulation/genetics , Metallothionein/genetics , Xenopus laevis/genetics , Aging , Amino Acid Sequence , Animals , Base Sequence , Biological Evolution , Cloning, Molecular , Computational Biology , Cysteine/chemistry , DNA, Complementary/biosynthesis , DNA, Complementary/genetics , Metallothionein/chemistry , Molecular Sequence Data , Phylogeny , Protein Isoforms/genetics , RNA/biosynthesis , RNA/genetics , Real-Time Polymerase Chain Reaction
10.
Toxicol In Vitro ; 29(4): 769-78, 2015 Jun.
Article in English | MEDLINE | ID: mdl-25765474

ABSTRACT

Persistent organic pollutants (POPs) such as 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), polychlorobiphenyl (PCB) 126 and 153, perfluorooctanesulfonic acid (PFOS), hexabromocyclododecane (HBCD), 2,2',4,4'-tetrabromodiphenyl ether (BDE-47), tributyltin (TBT), and methylmercury (MeHg) can be accumulated in seafood and then form a main source for human exposure. Some POPs have been associated with changes in steroid hormone levels in both humans and animals. This study describes the in vitro effects of these POPs and mixtures thereof in H295R adrenocortical carcinoma cells. Relative responses for 13 steroid hormones and 7 genes involved in the steroidogenic pathway, and CYP1A1, were analyzed. PFOS induced the most pronounced effects on steroid hormone levels by significantly affecting 9 out of 13 hormone levels measured, with the largest increases found for 17ß-estradiol, corticosterone, and cortisol. Furthermore, TCDD, both PCBs, and TBT significantly altered steroidogenesis. Increased steroid hormone levels were accompanied by related increased gene expression levels. The differently expressed genes were MC2R, CYP11B1, CYP11B2, and CYP19A1 and changes in gene expression levels were more sensitive than changes in hormone levels. The POP mixtures tested showed mostly additive effects, especially for DHEA and 17ß-estradiol levels. This study shows that some seafood POPs are capable of altering steroidogenesis in H295R cells at concentrations that mixtures might reach in human blood, suggesting that adverse health effects cannot be excluded.


Subject(s)
Endocrine Disruptors/toxicity , Hormones/metabolism , Steroids/metabolism , Water Pollutants, Chemical/toxicity , Cell Line, Tumor , Cell Survival/drug effects , DNA, Complementary/biosynthesis , Gene Expression Regulation/drug effects , Humans , RNA/biosynthesis , RNA/isolation & purification
11.
Anesth Analg ; 119(3): 570-577, 2014 Sep.
Article in English | MEDLINE | ID: mdl-25010825

ABSTRACT

BACKGROUND: Recently, clinical trials revealed renal impairment induced by hydroxyethyl starch (HES) in septic patients. In prior studies, we managed to demonstrate that HES accumulated in renal proximal tubule cells (PTCs). The related pathomechanism has not yet been discovered. To validate our hypothesis that the HES molecule itself is harmful, regardless of its molecule size or origin, we conducted a comprehensive study to elucidate the influences of different HES preparations on PTC viability in vitro. METHODS: Cell viability of human PTC was measured with a cytotoxicity assay, quantifying the reduction of tetrazolium salt to colored formazan. Experiments were performed by assessing the influence of different carrier solutions of HES (balanced, nonbalanced, culture medium), different average molecular weights (70, 130, 200 kDa), different origins (potato or corn derived), and various durations of incubation (2-21 hours). Furthermore, HES 130/0.4 was fractionated by ultrafiltration, and the impact on cell viability of average single-size fractions with <3, 3 to 10, 10 to 30, 30 to 50, 50 to 100, and >100 kDa was investigated. We also tested the possible synergistic effects of inflammation induced by tumor necrosis factor-α. RESULTS: All tested HES solutions, regardless of origin or carrier matrix, decreased cell viability in an equivalent, dose-dependent manner. Coincubation with tumor necrosis factor-α did not reduce HES-induced reduction of cell viability. Minor differences were detected comparing 70, 130, and 200 kDa preparations. Analysis of fractionated HES revealed that each fraction decreased cell viability. Even small HES molecules (10-30 kDa) were significantly deleterious. CONCLUSIONS: For the first time, we were able to show that only the total mass of HES molecules applied is responsible for the harmful impact on renal PTC in vitro. Neither molecular size nor their origin showed any relevance.


Subject(s)
Hydroxyethyl Starch Derivatives/adverse effects , Kidney Tubules, Proximal/pathology , Plasma Substitutes/adverse effects , Cell Line , Cell Survival/drug effects , Colloids , Crystalloid Solutions , Dose-Response Relationship, Drug , Drug Carriers , Formazans/chemistry , Humans , Indicators and Reagents , Inflammation Mediators/metabolism , Isotonic Solutions , Kidney Tubules, Proximal/drug effects , Molecular Weight , Pharmaceutical Solutions , Polymerase Chain Reaction , RNA/biosynthesis , RNA/genetics , Solanum tuberosum/chemistry , Tumor Necrosis Factor-alpha/pharmacology , Zea mays/chemistry
12.
Antimicrob Agents Chemother ; 58(2): 901-8, 2014.
Article in English | MEDLINE | ID: mdl-24277035

ABSTRACT

Cadazolid is a new oxazolidinone-type antibiotic currently in clinical development for the treatment of Clostridium difficile-associated diarrhea. Here, we report investigations on the mode of action and the propensity for spontaneous resistance development in C. difficile strains. Macromolecular labeling experiments indicated that cadazolid acts as a potent inhibitor of protein synthesis, while inhibition of DNA synthesis was also observed, albeit only at substantially higher concentrations of the drug. Strong inhibition of protein synthesis was also obtained in strains resistant to linezolid, in agreement with low MICs against such strains. Inhibition of protein synthesis was confirmed in coupled transcription/translation assays using extracts from different C. difficile strains, including strains resistant to linezolid, while inhibitory effects in DNA topoisomerase assays were weak or not detectable under the assay conditions. Spontaneous resistance frequencies of cadazolid were low in all strains tested (generally <10(-10) at 2× to 4× the MIC), and in multiple-passage experiments (up to 13 passages) MICs did not significantly increase. Furthermore, no cross-resistance was observed, as cadazolid retained potent activity against strains resistant or nonsusceptible to linezolid, fluoroquinolones, and the new antibiotic fidaxomicin. In conclusion, the data presented here indicate that cadazolid acts primarily by inhibition of protein synthesis, with weak inhibition of DNA synthesis as a potential second mode of action, and suggest a low potential for spontaneous resistance development.


Subject(s)
Anti-Bacterial Agents/pharmacology , Clostridioides difficile/drug effects , Drug Resistance, Bacterial/genetics , Protein Biosynthesis/drug effects , Acetamides/pharmacology , Aminoglycosides/pharmacology , Clostridioides difficile/genetics , Clostridioides difficile/growth & development , Clostridioides difficile/metabolism , DNA Gyrase/genetics , DNA Gyrase/metabolism , Drug Resistance, Bacterial/drug effects , Fidaxomicin , Fluoroquinolones/pharmacology , Linezolid , Microbial Sensitivity Tests , Oxazolidinones/pharmacology , Protein Biosynthesis/genetics , RNA/antagonists & inhibitors , RNA/biosynthesis , Recombinant Proteins , Subcellular Fractions/chemistry , Subcellular Fractions/metabolism , Transcription, Genetic/drug effects , Vancomycin/pharmacology
13.
Innate Immun ; 20(3): 301-11, 2014 Apr.
Article in English | MEDLINE | ID: mdl-23803412

ABSTRACT

Ganoderma lucidum (G. lucidum) is a medicinal mushroom long used in Asia as a folk remedy to promote health and longevity. Recent studies indicate that G. lucidum activates NK cells, but the molecular mechanism underlying this effect has not been studied so far. To address this question, we prepared a water extract of G. lucidum and examined its effect on NK cells. We observed that G. lucidum treatment increases NK cell cytotoxicity by stimulating secretion of perforin and granulysin. The mechanism of activation involves an increased expression of NKG2D and natural cytotoxicity receptors (NCRs), as well as increased phosphorylation of intracellular MAPKs. Our results indicate that G. lucidum induces NK cell cytotoxicity against various cancer cell lines by activating NKG2D/NCR receptors and MAPK signaling pathways, which together culminate in exocytosis of perforin and granulysin. These observations provide a cellular and molecular mechanism to account for the reported anticancer effects of G. lucidum extracts in humans.


Subject(s)
Antigens, Differentiation, T-Lymphocyte/metabolism , Cytotoxicity, Immunologic/immunology , Killer Cells, Natural/immunology , NK Cell Lectin-Like Receptor Subfamily K/biosynthesis , Perforin/metabolism , Reishi/chemistry , Animals , Antibodies/immunology , Cell Line , Cell Line, Tumor , Cell Survival/physiology , Humans , Mice , Mitogen-Activated Protein Kinases/physiology , RNA/biosynthesis , RNA/isolation & purification , RNA, Small Interfering/pharmacology , Receptors, Cell Surface/biosynthesis , Signal Transduction/physiology , Transfection
14.
Brain ; 137(Pt 1): 44-56, 2014 Jan.
Article in English | MEDLINE | ID: mdl-24253200

ABSTRACT

Childhood onset motor neuron diseases or neuronopathies are a clinically heterogeneous group of disorders. A particularly severe subgroup first described in 1894, and subsequently called Brown-Vialetto-Van Laere syndrome, is characterized by progressive pontobulbar palsy, sensorineural hearing loss and respiratory insufficiency. There has been no treatment for this progressive neurodegenerative disorder, which leads to respiratory failure and usually death during childhood. We recently reported the identification of SLC52A2, encoding riboflavin transporter RFVT2, as a new causative gene for Brown-Vialetto-Van Laere syndrome. We used both exome and Sanger sequencing to identify SLC52A2 mutations in patients presenting with cranial neuropathies and sensorimotor neuropathy with or without respiratory insufficiency. We undertook clinical, neurophysiological and biochemical characterization of patients with mutations in SLC52A2, functionally analysed the most prevalent mutations and initiated a regimen of high-dose oral riboflavin. We identified 18 patients from 13 families with compound heterozygous or homozygous mutations in SLC52A2. Affected individuals share a core phenotype of rapidly progressive axonal sensorimotor neuropathy (manifesting with sensory ataxia, severe weakness of the upper limbs and axial muscles with distinctly preserved strength of the lower limbs), hearing loss, optic atrophy and respiratory insufficiency. We demonstrate that SLC52A2 mutations cause reduced riboflavin uptake and reduced riboflavin transporter protein expression, and we report the response to high-dose oral riboflavin therapy in patients with SLC52A2 mutations, including significant and sustained clinical and biochemical improvements in two patients and preliminary clinical response data in 13 patients with associated biochemical improvements in 10 patients. The clinical and biochemical responses of this SLC52A2-specific cohort suggest that riboflavin supplementation can ameliorate the progression of this neurodegenerative condition, particularly when initiated soon after the onset of symptoms.


Subject(s)
Bulbar Palsy, Progressive/genetics , Hearing Loss, Sensorineural/genetics , Mutation/genetics , Receptors, G-Protein-Coupled/genetics , Adolescent , Brain/pathology , Bulbar Palsy, Progressive/drug therapy , Carnitine/analogs & derivatives , Carnitine/blood , Child , Child, Preschool , Exome/genetics , Female , Genotype , Hearing Loss, Sensorineural/drug therapy , Humans , Image Processing, Computer-Assisted , Magnetic Resonance Imaging , Male , Microarray Analysis , Motor Neuron Disease/physiopathology , Neurologic Examination , Pedigree , RNA/biosynthesis , RNA/genetics , Riboflavin/therapeutic use , Sequence Analysis, DNA , Sural Nerve/pathology , Vitamins/therapeutic use , Young Adult
15.
Pharmazie ; 69(11): 799-803, 2014 Nov.
Article in English | MEDLINE | ID: mdl-25985573

ABSTRACT

The aim of current study was to investigate the effect of some commonly used medicinal herbs on the regulation of rat CYP2D gene expression and its metabolic activity. Wistar albino rats were treated for seven consecutive days with selected doses of five commonly used herbs (Trigonella foenum-graecum, Ferula asafoetida, Nigella sativa, Commiphora myrrha and Lepidium sativum). Thereafter, rat livers were harvested and CYP2D mRNA levels were determined by RT-PCR. The metabolic activity of CYP2D was performed on rat hepatic microsomes using dextromethorphan as specific substrate. All investigated herbs produced inhibition of CYP2D mRNA expression and metabolic activity. The inhibitory potential of investigated herbs on rat CYP2D mRNA was in the following order: Commiphora myrrha > Nigella sativa > Lepidium sativum > Trigonella foenum-graecum > Ferula asafoetida. Whereas, the inhibitory potential of investigated herbs on CYP2D mediated enzyme metabolic activity was found in following order: Nigella sativa > Lepidium sativum > Trigonella foenum-graecum > Commiphora myrrha > Ferula asafoetida. The current study shows that only used herbs reduce CYP2D activity in rat liver microsomes at the transcriptional levels. Such effects could lead to undesirable pharmacological effects of clinically used low therapeutic index CYP2D substrate drugs.


Subject(s)
Cytochrome P-450 Enzyme Inhibitors/pharmacology , Cytochrome P-450 Enzyme System/biosynthesis , Gene Expression Regulation, Enzymologic/drug effects , Liver/enzymology , Plant Preparations/pharmacology , Animals , DNA, Complementary/biosynthesis , DNA, Complementary/genetics , Liver/drug effects , Microsomes, Liver/drug effects , Microsomes, Liver/enzymology , Plants, Medicinal/chemistry , RNA/biosynthesis , RNA/isolation & purification , Rats , Rats, Wistar
16.
Nucleic Acids Res ; 41(22): 10086-109, 2013 Dec.
Article in English | MEDLINE | ID: mdl-23999091

ABSTRACT

Although many long non-coding RNAs (lncRNAs) have been discovered, their function and their association with RNAi factors in the nucleus have remained obscure. Here, we identify RNA transcripts that overlap the cyclooxygenase-2 (COX-2) promoter and contain two adjacent binding sites for an endogenous miRNA, miR-589. We find that miR-589 binds the promoter RNA and activates COX-2 transcription. In addition to miR-589, fully complementary duplex RNAs that target the COX-2 promoter transcript activate COX-2 transcription. Activation by small RNA requires RNAi factors argonaute-2 (AGO2) and GW182, but does not require AGO2-mediated cleavage of the promoter RNA. Instead, the promoter RNA functions as a scaffold. Binding of AGO2 protein/small RNA complexes to the promoter RNA triggers gene activation. Gene looping allows interactions between the promoters of COX-2 and phospholipase A2 (PLA2G4A), an adjacent pro-inflammatory pathway gene that produces arachidonic acid, the substrate for COX-2 protein. miR-589 and fully complementary small RNAs regulate both COX-2 and PLA2G4A gene expression, revealing an unexpected connection between key steps of the eicosanoid signaling pathway. The work demonstrates the potential for RNA to coordinate locus-dependent assembly of related genes to form functional operons through cis-looping.


Subject(s)
Cyclooxygenase 2/genetics , Group IV Phospholipases A2/genetics , Promoter Regions, Genetic , RNA, Small Untranslated/metabolism , Transcriptional Activation , Argonaute Proteins/metabolism , Autoantigens/metabolism , Cell Line, Tumor , Histones/metabolism , Humans , MicroRNAs/metabolism , RNA/biosynthesis , RNA, Antisense/biosynthesis , RNA-Binding Proteins/metabolism
17.
Behav Brain Res ; 253: 290-6, 2013 Sep 15.
Article in English | MEDLINE | ID: mdl-23912030

ABSTRACT

Serotonin (5-HT) acts as a neurogenic compound in the developing brain; however serotonin altering drugs such as SSRIs are often prescribed to pregnant and lactating mothers. Early agonism of 5-HT receptors could alter the development of serotonergic circuitry, altering neurotransmission and behaviors mediated by 5-HT signaling, including memory, fear and aggression. This study was designed to investigate the effects of early serotonin agonism on later behaviors. An extremely aggressive White leghorn strain (15I5) was used in the study. The chicks were injected with 5-MT (a serotonin agonist) at 2.5mg/kg (low dose), 10mg/kg (high dose) or saline (control) on the day of hatch and a second dose 24h later (n=9/sex/trt). Chicks' fear response and memory were tested at 2 weeks of age. In the fear test, chicks were subjected to a social isolation test for 20min, time to first vocalization and numbers of vocalizations were recorded. In the memory test, chicks were placed in a running wheel and presented with an imprinted object (white box with a red light) and a similar shaped novel object (blue box with a white light), respectively. The distance traveled in the wheel toward each object was measured. At 10 weeks of age birds were tested for aggression and concentrations of catecholamines were determined from the raphe nucleus and hypothalamus by HPLC (n=12). Expression of 5-HT1A and 5-HT1B receptor genes were measured by RT-PCR. Both high and low dose chicks tended to have shorter latency to first vocalization and a greater number of vocalizations compared with control chicks. Memory test showed that chicks from all groups traveled a similar distance toward a familiar object. However, control chicks walked the least toward a novel object, low dose chicks tended to walk further, and high dose chicks walked significantly further for a novel object. In aggression tests, both high and low dose males exhibited greater frequency of aggressive behaviors compared to controls, while no difference in aggression was evident in the females. Norepinephrine concentrations were also reduced in the low dose birds in the hypothalamus and in the raphe nucleus. Serotonin concentrations tended to be lower only in the both hypothalamus and raphe nucleus of the low dose birds. 5-HT1A expression was greatest in the hypothalamus and raphe nucleus of low dose birds. The agonism of the serotonin system during neural development of birds genetically predisposed to aggression alters both the dopaminergic and serotonergic systems further increasing their aggressiveness.


Subject(s)
5-Methoxytryptamine/pharmacology , Behavior, Animal/physiology , Biogenic Monoamines/metabolism , Chickens/physiology , Serotonin/physiology , Aggression/drug effects , Animals , Animals, Newborn , Behavior, Animal/drug effects , DNA Primers , DNA, Complementary/biosynthesis , DNA, Complementary/genetics , Female , Gene Expression/drug effects , Hypothalamus/drug effects , Hypothalamus/metabolism , Male , Memory/drug effects , RNA/biosynthesis , RNA/genetics , Raphe Nuclei/drug effects , Raphe Nuclei/metabolism , Real-Time Polymerase Chain Reaction , Receptor, Serotonin, 5-HT1A/genetics , Receptor, Serotonin, 5-HT1B/genetics , Social Behavior , Social Isolation
18.
Physiol Behav ; 120: 54-63, 2013 Aug 15.
Article in English | MEDLINE | ID: mdl-23831740

ABSTRACT

Feeding in vertebrates is controlled by a number of appetite stimulating (orexigenic, e.g., orexin and neuropeptide Y, NPY) and appetite suppressing (anorexigenic, e.g., cholecystokinin, CCK and cocaine- and amphetamine-regulated transcript, CART) hormones. Cunners (Tautogolabrus adspersus) survive the winter in shallow coastal waters by entering a torpor-like state, during which they forgo feeding. In order to better understand the mechanisms regulating appetite/fasting in these fish, quantitative real-time PCR was used to measure transcript expression levels of four appetite-regulating hormones: NPY, CART, orexin and CCK in the forebrain (hypothalamus and telencephalon) and CCK in the gut of fed, short-term summer fasted, and natural winter torpor cunners. Summer fasting induced a decrease in hypothalamic orexin levels and telencephalon NPY, CART and CCK mRNA levels. All brain hormone mRNA levels decreased during natural torpor as compared to fed summer fish. In the gut, CCK expression levels decreased during summer fasting. These results indicate that, in cunner, orexin, NPY, CART and CCK may play a role in appetite regulation and might mediate different physiological responses to short-term summer fasting and torpor-induced long-term fasting.


Subject(s)
Appetite/genetics , Appetite/physiology , Fasting/physiology , Fasting/psychology , Hormones/genetics , Hormones/physiology , Perciformes/physiology , Torpor/physiology , Amino Acid Sequence , Animals , Cholecystokinin/genetics , Cholecystokinin/metabolism , Cloning, Molecular , DNA, Complementary/biosynthesis , DNA, Complementary/genetics , Eating , Female , Food Deprivation/physiology , Gene Expression/physiology , Intracellular Signaling Peptides and Proteins/genetics , Intracellular Signaling Peptides and Proteins/metabolism , Male , Molecular Sequence Data , Nerve Tissue Proteins/genetics , Nerve Tissue Proteins/metabolism , Neuropeptide Y/genetics , Neuropeptide Y/metabolism , Neuropeptides/genetics , Neuropeptides/metabolism , Orexins , RNA/biosynthesis , RNA/genetics , Real-Time Polymerase Chain Reaction , Seasons , Temperature
19.
J Pharmacol Exp Ther ; 346(3): 486-94, 2013 Sep.
Article in English | MEDLINE | ID: mdl-23843632

ABSTRACT

Low brain accumulation of anticancer drugs due to efflux transporters may limit chemotherapeutic efficacy, necessitating a better understanding of the underlying mechanisms. P-glycoprotein (Abcb1a/1b) and breast cancer resistance protein (Abcg2) combination knockout mice often display disproportionately increased brain accumulation of shared drug substrates compared with single transporter knockout mice. Recently developed pharmacokinetic models could explain this phenomenon. To experimentally test these models and their wider relevance for tyrosine kinase inhibitors and other drugs, we selected dasatinib, sorafenib, and sunitinib because of their divergent oral availability and brain accumulation profiles: the brain accumulation of dasatinib is mainly restricted by Abcb1, that of sorafenib mainly by Abcg2, and that of sunitinib equally by Abcb1 and Abcg2. We analyzed the effect of halving the efflux activity of these transporters at the blood-brain barrier by generating heterozygous Abcb1a/1b;Abcg2 knockout mice and testing the plasma and brain levels of the drugs after oral administration at 10 mg/kg. Real-time reverse transcription-polymerase chain reaction analysis confirmed the ∼2-fold decreased expression of both transporters in brain. Interestingly, whereas complete knockout of the transporters caused 24- to 36-fold increases in brain accumulation of the drugs, the heterozygous mice only displayed 1.6- to 1.9-fold increases of brain accumulation relative to wild-type mice. These results are well in line with the predictions of the pharmacokinetic models and provide strong support for their validity for a wider range of drugs. Moreover, retrospective analysis of fetal accumulation of drugs across the placenta in Abcb1a/1b heterozygous knockout pups suggests that these models equally apply to the maternal-fetal barrier.


Subject(s)
ATP Binding Cassette Transporter, Subfamily B/genetics , ATP Binding Cassette Transporter, Subfamily B/physiology , ATP-Binding Cassette Transporters/genetics , ATP-Binding Cassette Transporters/physiology , Indoles/pharmacokinetics , Niacinamide/analogs & derivatives , Phenylurea Compounds/pharmacokinetics , Protein Kinase Inhibitors/pharmacology , Protein-Tyrosine Kinases/antagonists & inhibitors , Pyrimidines/pharmacokinetics , Pyrroles/pharmacokinetics , Thiazoles/pharmacokinetics , ATP Binding Cassette Transporter, Subfamily G, Member 2 , Animals , Area Under Curve , Brain/metabolism , DNA, Complementary/biosynthesis , DNA, Complementary/genetics , Dasatinib , Female , Gene Dosage , Half-Life , Male , Maternal-Fetal Exchange , Mice , Mice, Knockout , Niacinamide/pharmacokinetics , Pregnancy , RNA/biosynthesis , RNA/genetics , Real-Time Polymerase Chain Reaction , Sex Characteristics , Sorafenib , Sunitinib
20.
Horm Behav ; 64(1): 44-52, 2013 Jun.
Article in English | MEDLINE | ID: mdl-23644171

ABSTRACT

Neuroendocrine pathways that regulate social behavior are remarkably conserved across divergent taxa. The neuropeptides arginine vasotocin/vasopressin (AVT/AVP) and their receptor V1a mediate aggression, space use, and mating behavior in male vertebrates. The hormone prolactin (PRL) also regulates social behavior across species, most notably paternal behavior. Both hormone systems may be involved in the evolution of monogamous mating systems. We compared AVT, AVT receptor V1a2, PRL, and PRL receptor PRLR1 gene expression in the brains as well as circulating androgen concentrations of free-living reproductively active males of two closely related North American cichlid species, the monogamous Herichthys cyanoguttatus and the polygynous Herichthys minckleyi. We found that H. cyanoguttatus males bond with a single female and together they cooperatively defend a small territory in which they reproduce. In H. minckleyi, a small number of large males defend large territories in which they mate with several females. Levels of V1a2 mRNA were higher in the hypothalamus of H. minckleyi, and PRLR1 expression was higher in the hypothalamus and telencephalon of H. minckleyi. 11-ketotestosterone levels were higher in H. minckleyi, while testosterone levels were higher in H. cyanoguttatus. Our results indicate that a highly active AVT/V1a2 circuit(s) in the brain is associated with space use and social dominance and that pair bonding is mediated either by a different, less active AVT/V1a2 circuit or by another neuroendocrine system.


Subject(s)
Androgens/physiology , Arginine Vasopressin/physiology , Cichlids/physiology , Sexual Behavior, Animal/physiology , Signal Transduction/physiology , Animals , DNA, Complementary/biosynthesis , DNA, Complementary/genetics , Data Interpretation, Statistical , Female , Hypothalamus/metabolism , Immunoenzyme Techniques , Individuality , Male , Prolactin/metabolism , RNA/biosynthesis , RNA/genetics , RNA, Messenger/biosynthesis , RNA, Messenger/genetics , Real-Time Polymerase Chain Reaction , Social Behavior , Species Specificity , Telencephalon/metabolism , Vasotocin/metabolism
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