Metagenomic analysis reveals mixed Mycobacterium tuberculosis infection in a 18th century Hungarian midwife.

The Vác Mummy Collection comprises 265 well documented mummified individuals from the late 16th to the early 18th century that were discovered in 1994 inside a crypt in Vác, Hungary. This collection offers a unique opportunity to study the relationship between humans and pathogens in the pre-antibiotic era, as previous studies have shown a high proportion of tuberculosis (TB) infections among the individuals. In this study, we recovered ancient DNA with shotgun sequencing from a rib bone sample of a 18th century midwife. This individual is part of the collection and shows clear skeletal changes that are associated with tuberculosis and syphilis. To provide molecular proof, we applied a metagenomic approach to screen for ancient pathogen DNA. While we were unsuccessful to recover any ancient Treponema pallidum DNA, we retrieved high coverage ancient TB DNA and identified a mixed infection with two distinct TB strains by detailed single-nucleotide polymorphism and phylogenetic analysis. Thereby, we have obtained comprehensive results demonstrating the long-time prevalence of mixed infections with the sublineages L4.1.2.1/Haarlem and L4.10/PGG3 within the local community in preindustrial Hungary and put them in context of sociohistorical factors.

njures of most probably traumatic origin on an ancient Egyptian mummy's head / Feltehetoen traumás eredetu sérülések egy ókori egyiptomi múmiafejen.

Összefoglaló. Bevezetés: Egy traumás eredetu sérüléseket mutató, ókori egyiptomi koponya vizsgálatát ismertetjük a Magyar Természettudományi Múzeum gyujteményébol. A jelen cikkben egy mumifikált fej elemzését emeltük ki, ennek átfogó vizsgálatát és részletes eredményeit közöljük. Célkituzés: Célunk egy multidiszciplináris vizsgálatsorozat megvalósítása volt, amelyen keresztül képet kapunk az egykor Egyiptom területén élt emberek egészségi állapotáról. Módszer: A kutatás során a múmiákon szerves és szervetlen kémiai analíziseket, komputertomográfiai és röntgenvizsgálatot, szénizotópos kormeghatározást végeztünk, és felhasználtunk biológiai antropológiai módszereket is. Eredmények: A koponya igazoltan az ókori Egyiptomból származik, és mivel sebei gyógyulásnak indultak, véleményünk szerint az egyén túlélte a fejét ért behatást. Ez meglepo eredménynek minosül, hiszen ilyen jellegu életveszélyes traumás sérüléseket csak akkor lehet nagy valószínuséggel túlélni, ha megfelelo orvosi ellátás áll rendelkezésre. Következtetés: Úgy gondoljuk, ebben az esetben is ez történt, bizonyítva, hogy az egyiptomi orvosi ismeretek valóban igen fejlettek és az orvoslás magas színvonalú volt. Orv Hetil. 2020; 161(51): 2162-2170. INTRODUCTION: We are presenting the analysis of an ancient Egyptian mummified head from the collection of the Hungarian Natural History Museum, which shows special traumatic injuries. The examination of this artefact nicely demonstrates the procedures we usually apply in our research on the Egyptian mummies of the Museum. OBJECTIVE: Our aim was to implement a series of multidisciplinary studies to get a picture of the health condition of these people once living in the territory of Egypt. METHOD: When researching the mummies, we performed organic and non-organic chemical analyses, computed tomography, X-ray examinations, radiocarbon isotope dating as well as biological anthropological methods. RESULTS: In this article, we report on the comprehensive examination of the skull and the detailed results we got. The skull is proven to originate from ancient Egypt. CONCLUSION: As the wounds began to heal, we can conclude that the individual survived the impact on his head. This is quite surprising as such life-threatening traumatic injuries can only be survived if adequate medical care is available. We believe this was the case also here, i. e., ancient Egyptian medicine was highly developed and of really high standards. Orv Hetil. 2020; 161(51): 2162-2170.

Mitogenomic data indicate admixture components of Central-Inner Asian and Srubnaya origin in the conquering Hungarians.

It has been widely accepted that the Finno-Ugric Hungarian language, originated from proto Uralic people, was brought into the Carpathian Basin by the conquering Hungarians. From the middle of the 19th century this view prevailed against the deep-rooted Hungarian Hun tradition, maintained in folk memory as well as in Hungarian and foreign written medieval sources, which claimed that Hungarians were kinsfolk of the Huns. In order to shed light on the genetic origin of the Conquerors we sequenced 102 mitogenomes from early Conqueror cemeteries and compared them to sequences of all available databases. We applied novel population genetic algorithms, named Shared Haplogroup Distance and MITOMIX, to reveal past admixture of maternal lineages. Our results show that the Conquerors assembled from various nomadic groups of the Eurasian steppe. Population genetic results indicate that they had closest connection to the Onogur-Bulgar ancestors of Volga Tatars. Phylogenetic results reveal that more than one third of the Conqueror maternal lineages were derived from Central-Inner Asia and their most probable ultimate sources were the Asian Scythians and Asian Huns, giving support to the Hungarian Hun tradition. The rest of the lineages most likely originated from the Bronze Age Potapovka-Poltavka-Srubnaya cultures of the Pontic-Caspian steppe. Available data imply that the Conquerors did not have a major contribution to the gene pool of the Carpathian Basin.

5000 years of dietary variations of prehistoric farmers in the Great Hungarian Plain.

The development of farming was a catalyst for the evolution of the human diet from the varied subsistence practices of hunter-gatherers to the more globalised food economy we depend upon today. Although there has been considerable research into the dietary changes associated with the initial spread of farming, less attention has been given to how dietary choices continued to develop during subsequent millennia. A paleogenomic time transect for 5 millennia of human occupation in the Great Hungarian Plain spanning from the advent of the Neolithic to the Iron Age, showed major genomic turnovers. Here we assess where these genetic turnovers are associated with corresponding dietary shifts, by examining the carbon and nitrogen stable isotope ratios of 52 individuals. Results provide evidence that early Neolithic individuals, which were genetically characterised as Mesolithic hunter-gatherers, relied on wild resources to a greater extent than those whose genomic attributes were of typical Neolithic European farmers. Other Neolithic individuals and those from the Copper Age to Bronze Age periods relied mostly on terrestrial C3 plant resources. We also report a carbon isotopic ratio typical of C4 plants, which may indicate millet consumption in the Late Bronze Age, despite suggestions of the crop's earlier arrival in Europe during the Neolithic.

Genome flux and stasis in a five millennium transect of European prehistory.

The Great Hungarian Plain was a crossroads of cultural transformations that have shaped European prehistory. Here we analyse a 5,000-year transect of human genomes, sampled from petrous bones giving consistently excellent endogenous DNA yields, from 13 Hungarian Neolithic, Copper, Bronze and Iron Age burials including two to high (~22 × ) and seven to ~1 × coverage, to investigate the impact of these on Europe's genetic landscape. These data suggest genomic shifts with the advent of the Neolithic, Bronze and Iron Ages, with interleaved periods of genome stability. The earliest Neolithic context genome shows a European hunter-gatherer genetic signature and a restricted ancestral population size, suggesting direct contact between cultures after the arrival of the first farmers into Europe. The latest, Iron Age, sample reveals an eastern genomic influence concordant with introduced Steppe burial rites. We observe transition towards lighter pigmentation and surprisingly, no Neolithic presence of lactase persistence.

Early dispersal of modern humans in Europe and implications for Neanderthal behaviour.

The appearance of anatomically modern humans in Europe and the nature of the transition from the Middle to Upper Palaeolithic are matters of intense debate. Most researchers accept that before the arrival of anatomically modern humans, Neanderthals had adopted several 'transitional' technocomplexes. Two of these, the Uluzzian of southern Europe and the Châtelperronian of western Europe, are key to current interpretations regarding the timing of arrival of anatomically modern humans in the region and their potential interaction with Neanderthal populations. They are also central to current debates regarding the cognitive abilities of Neanderthals and the reasons behind their extinction. However, the actual fossil evidence associated with these assemblages is scant and fragmentary, and recent work has questioned the attribution of the Châtelperronian to Neanderthals on the basis of taphonomic mixing and lithic analysis. Here we reanalyse the deciduous molars from the Grotta del Cavallo (southern Italy), associated with the Uluzzian and originally classified as Neanderthal. Using two independent morphometric methods based on microtomographic data, we show that the Cavallo specimens can be attributed to anatomically modern humans. The secure context of the teeth provides crucial evidence that the makers of the Uluzzian technocomplex were therefore not Neanderthals. In addition, new chronometric data for the Uluzzian layers of Grotta del Cavallo obtained from associated shell beads and included within a Bayesian age model show that the teeth must date to ~45,000-43,000 calendar years before present. The Cavallo human remains are therefore the oldest known European anatomically modern humans, confirming a rapid dispersal of modern humans across the continent before the Aurignacian and the disappearance of Neanderthals.