RESUMEN
The beneficial effects of functionally useful plants (e.g. medicinal and food plants) arise from the multi-target activities of multiple ingredients of these plants. The knowledge of the collective molecular activities of these plants facilitates mechanistic studies and expanded applications. A number of databases provide information about the effects and targets of various plants and ingredients. More comprehensive information is needed for broader classes of plants and for the landscapes of individual plant's multiple targets, collective activities and regulated biological pathways, processes and diseases. We therefore developed a new database, Collective Molecular Activities of Useful Plants (CMAUP), to provide the collective landscapes of multiple targets (ChEMBL target classes) and activity levels (in 2D target-ingredient heatmap), and regulated gene ontologies (GO categories), biological pathways (KEGG categories) and diseases (ICD blocks) for 5645 plants (2567 medicinal, 170 food, 1567 edible, 3 agricultural and 119 garden plants) collected from or traditionally used in 153 countries and regions. These landscapes were derived from 47 645 plant ingredients active against 646 targets in 234 KEGG pathways associated with 2473 gene ontologies and 656 diseases. CMAUP (http://bidd2.nus.edu.sg/CMAUP/) is freely accessible and searchable by keywords, plant usage classes, species families, targets, KEGG pathways, gene ontologies, diseases (ICD code) and geographical locations.
Asunto(s)
Biología Computacional/métodos , Productos Agrícolas/química , Bases de Datos Factuales , Preparaciones de Plantas/uso terapéutico , Plantas Medicinales/química , Biología Computacional/estadística & datos numéricos , Descubrimiento de Drogas/métodos , Almacenamiento y Recuperación de la Información/métodos , Internet , Terapia Molecular Dirigida/métodos , Transducción de Señal/efectos de los fármacos , Interfaz Usuario-ComputadorRESUMEN
beta-carotene is a commonly used food colorant. In this work, a novel beta-carotene producing strain, Serratia marcescens RB3, was isolated and identified by physiological and biochemical tests, as well as 16S rDNA sequence analysis. The production of beta-carotene by S. marcescens RB3 was identified through HPLC analysis. The cultivation conditions for beta-carotene production by S. marcescens RB3 were optimized as 2.0 percent lactose, 2.0 percent peptone, 0.3 percent beef extract, 1.0 percent NaCl supplemented with 0.05 percent Fe2+, pH 6.0 and 30ºC. Under the optimal conditions, the yield of beta-carotene achieved 2.45 ug/mL.