Chromosome-level genome assembly and annotation of the prickly nightshade Solanum rostratum Dunal.

The prickly nightshade Solanum rostratum, an annual malignant weed, is native to North America and has globally invaded 34 countries, causing serious threats to ecosystems, agriculture, animal husbandry, and human health. In this study, we constructed a chromosome-level genome assembly and annotation of S. rostratum. The contig-level genome was initially assembled in 898.42 Mb with a contig N50 of 62.00 Mb from PacBio high-fidelity reads. With Hi-C sequencing data scaffolding, 96.80% of the initially assembled sequences were anchored and orientated onto 12 pseudo-chromosomes, generating a genome of 869.69 Mb with a contig N50 of 72.15 Mb. We identified 649.92 Mb (72.26%) of repetitive sequences and 3,588 non-coding RNAs in the genome. A total of 29,694 protein-coding genes were predicted, with 28,154 (94.81%) functionally annotated genes. We found 99.5% and 91.3% complete embryophyta_odb10 genes in the pseudo-chromosomes genome and predicted gene datasets by BUSCO assessment. The present genomic resource provides essential information for subsequent research on the mechanisms of environmental adaptation of S. rostratum and host shift in Colorado potato beetles.

Gold Nanoparticles Functionalized with Au-Se-Bonded Peptides Used as Gatekeepers for the Off-Target Release of Resveratrol in the Treatment of Triple-Negative Breast Cancer.

Resveratrol has been garnering considerable attention as a promising chemopreventive and chemotherapeutic drug against metastatic tumors such as triple-negative breast cancer (TNBC). However, the potential in vivo application of resveratrol has been highly limited due to its poor solubility, rapid conjugation, low bioavailability, and bioactivity. In this study, a silica mesoporous nanoparticle (MSN)-based drug delivery system (DDS), named Au-Se@MSN, is developed to deliver the loaded resveratrol, endowing it with properties of targeted delivery, excellent bioavailability, and antioxidation of resveratrol. In Au-Se@MSN(RES), gold nanoparticles functionalized with selenol-modified uPA-specific peptides act as gatekeepers to avoid the interference of glutathione in the bloodstream and realize negligible premature release of resveratrol during delivery. Au-Se@MSN(RES) shows prolonged resveratrol release at the tumor site and endows resveratrol with a remarkable in vitro therapeutic effect. The pharmacological dose of resveratrol treatment on MDA-MB-231 cells was found to result in the generation of a high level of NAD(P)H other than H2O2, indicating reductive stress instead of oxidative stress involved in the resveratrol therapeutic process. In vivo experiments showed that Au-Se@MSN greatly improves the chemotherapeutic effect of resveratrol on mice bearing TNBC tumors, and damage to normal tissues and cells is negligible. Overall, Au-Se@MSN is a potential tool for further studies on the anticancer mechanism and clinical applications of resveratrol.

Pyruvate, phosphate dikinase regulatory protein impacts light response of C4 photosynthesis in Setaria viridis.

In C4 plants, the pyruvate (Pyr), phosphate dikinase regulatory protein (PDRP) regulates the activity of the C4 pathway enzyme Pyr, phosphate dikinase (PPDK) in a light-/dark-dependent manner. The importance of this regulatory action to C4 pathway function and overall C4 photosynthesis is unknown. To resolve this question, we assessed in vivo PPDK phospho-regulation and whole leaf photophysiology in a CRISPR-Cas9 PDRP knockout (KO) mutant of the NADP-ME C4 grass green millet (Setaria viridis). PDRP enzyme activity was undetectable in leaf extracts from PDRP KO lines. Likewise, PPDK phosphorylated at the PDRP-regulatory Thr residue was immunologically undetectable in leaf extracts. PPDK enzyme activity in rapid leaf extracts was constitutively high in the PDRP KO lines, irrespective of light or dark pretreatment of leaves. Gas exchange analysis of net CO2 assimilation revealed PDRP KO leaves had markedly slower light induction kinetics when leaves transition from dark to high-light or low-light to high-light. In the initial 30 min of the light induction phase, KO leaves had an ∼15% lower net CO2 assimilation rate versus the wild-type (WT). Despite the impaired slower induction kinetics, we found growth and vigor of the KO lines to be visibly indistinguishable from the WT when grown in normal air and under standard growth chamber conditions. However, the PDRP KO plants grown under a fluctuating light regime exhibited a gradual multi-day decline in Fv/Fm, indicative of progressive photosystem II damage due to the absence of PDRP. Collectively, our results demonstrate that one of PDRP's functions in C4 photosynthesis is to ensure optimal photosynthetic light induction kinetics during dynamic changes in incident light.

[Effects of Vegetation Restoration on the Structure and Function of the Rhizosphere Soil Bacterial Community of Solanum rostratum].

Invasive plants can change soil microbial communities and therefore promote invasion. While vegetation restoration has been adopted in certain infested lands to curb the invasion of Solanum rostratum, changes in the composition and function of rhizosphere soil bacterial communities of the species before and after the restoration has not yet been reported. In this study, two vegetation combinations used in previous studies were selected as candidates:Astragalus adsurgens+Elymus dahuricus+Bromus inermis (T1) and A. adsurgens+Festuca arundinacea+Agropyron cristatum+Leymus chinensis (T2). Rhizosphere soil samples were collected from each combination (T1 and T2), a S. rostratum invaded area (SR), and the native plant (NP) control to analyze the bacterial community structure and diversity using 16S rDNA gene sequencing on the Illumina MiSeq platform. PICRUSt was further used to predict the functional abilities of soil bacterial communities. Results of 16S rDNA gene sequencing showed that both the Simpson and Chao1 indices were higher in the SR treatment than in the NP treatment, but neither reached a significant level, although both indices decreased significantly after vegetation restoration (T1 and T2; P<0.05). The relative abundance of Microvirga, Skermanella, and Sphingomonas from phylum Proteobacteria and Bryobacter from the phylum Acidobacteria were significantly lower in the SR treatment (P<0.05) when compared with the NP treatment and higher in restoration treatments (T1 and T2). The RDA analysis showed that soil organic matter (OM), total nitrogen (TN), total phosphorus (TP), total potassium (TK), and available potassium (AK) were important factors affecting the composition of the bacterial community. Based on the PICRUSt analysis of soil bacterial community functions, the relative abundance of gene families related to biosynthesis of amino acids, purine metabolism, pyrimidine metabolism, ribosome, and aminoacyl-tRNA biosynthesis were higher in the rhizosphere samples of the SR treatment than those of the NP treatment and reduced significantly after vegetation restoration (T1 and T2; P<0.05). The structure and function of rhizosphere soil bacterial community of S. rostratum and vegetation restoration were analyzed and provided a theoretical basis for the invasion mechanism and ecological restoration of S. rostratum.