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1.
Int J Med Mushrooms ; 19(4): 347-353, 2017.
Artículo en Inglés | MEDLINE | ID: mdl-28605323

RESUMEN

Numerous studies indicate the crucial role of natural killer (NK) cells in the prevention of tumor growth and inhibition of their metastasis, which suggests the possibility of their use in cancer treatment. This therapeutic strategy required finding a selective NK cell stimulator that, upon administration, did not disturb organism homeostasis, unlike natural activators (interleukin-2 or interleukin-12). Because the majority of anticancer agents derived from Basidiomycetes are able to stimulate lymphocytes, we describe the influence of Boletus edulis RNA on a human NK cell line (NK92). Our studies showed that a B. edulis RNA fraction was not toxic against NK92 cells. Furthermore, the tested fraction significantly stimulated NK92 cell proliferation and their cytotoxicity against tumor cells. We demonstrate here, to our knowledge for the first time, that B. edulis RNA enhances NK cell activity and possesses immunomodulatory potential.


Asunto(s)
Basidiomycota/química , Factores Inmunológicos/aislamiento & purificación , Factores Inmunológicos/farmacología , Células Asesinas Naturales/inmunología , ARN de Hongos/aislamiento & purificación , ARN de Hongos/metabolismo , Productos Biológicos/aislamiento & purificación , Productos Biológicos/farmacología , Línea Celular , Proliferación Celular/efectos de los fármacos , Supervivencia Celular/efectos de los fármacos , Humanos , Células Asesinas Naturales/efectos de los fármacos , Células Asesinas Naturales/fisiología
2.
Br J Biomed Sci ; 73(1): 44-8, 2016.
Artículo en Inglés | MEDLINE | ID: mdl-27182677

RESUMEN

BACKGROUND: Several studies examined the effect of the Echinophora platyloba extract in treatment of azole-resistant Candida albicans clinical isolates. OBJECTIVE: We investigated the effect of E. platyloba extract on expression of CDR1 and CDR2 genes in fluconazole-resistant clinical isolates of C. albicans using real-time PCR. MATERIALS AND METHODS: The crude extract of E. platyloba was obtained using percolation method. Using serial dilution method, different concentrations of extract were achieved. Two hundred microlitres of fungal suspension (10(6) CFU/ml) was added to the media and cultured with different concentrations and then incubated at 37 °C for 48 h. The concentration of extract in the first tube, which inhibited the growth of C. albicans, was recorded as the Minimal Inhibitory Concentration (MIC). In order to analyse the expression of CDR1 and CDR2 genes, RNA was extracted from C. albicans isolates before and after treatment with MIC of E. platyloba using glass beads and the denaturing buffer agents in an RNase-free environment and then the cDNA was synthesised and used for real-time PCR assay. RESULTS: Twenty of total of 148 isolates were resistant to fluconazole. The MIC and MFC for the alcoholic extract of E. Platyloba were 64 mg/ml and 128 mg/ml, respectively. Real-time PCR results revealed that the mRNA levels of CDR1 and CDR2 genes significantly declined after incubation with E. Platyloba (both p values < 0.001). CONCLUSION: E. Platyloba is effective in reducing CDR1 and CDR2 expression which in turn plays an important role in fluconazole resistance in Candida species.


Asunto(s)
Antifúngicos/farmacología , Apiaceae/química , Candida albicans/efectos de los fármacos , Farmacorresistencia Fúngica , Fluconazol/farmacología , Proteínas Fúngicas/metabolismo , Proteínas de Transporte de Membrana/metabolismo , Extractos Vegetales/farmacología , Antifúngicos/aislamiento & purificación , Candida albicans/genética , Candida albicans/aislamiento & purificación , Candida albicans/metabolismo , Relación Dosis-Respuesta a Droga , Farmacorresistencia Fúngica/genética , Flores , Proteínas Fúngicas/genética , Regulación Fúngica de la Expresión Génica/efectos de los fármacos , Humanos , Proteínas de Transporte de Membrana/genética , Pruebas de Sensibilidad Microbiana , Fitoterapia , Extractos Vegetales/aislamiento & purificación , Hojas de la Planta , Plantas Medicinales , ARN de Hongos/metabolismo , ARN Mensajero/metabolismo , Reacción en Cadena en Tiempo Real de la Polimerasa , Factores de Tiempo
3.
J Biol Chem ; 291(30): 15796-805, 2016 07 22.
Artículo en Inglés | MEDLINE | ID: mdl-27226603

RESUMEN

Non-protein amino acids, particularly isomers of the proteinogenic amino acids, present a threat to proteome integrity if they are mistakenly inserted into proteins. Quality control during aminoacyl-tRNA synthesis reduces non-protein amino acid incorporation by both substrate discrimination and proofreading. For example phenylalanyl-tRNA synthetase (PheRS) proofreads the non-protein hydroxylated phenylalanine derivative m-Tyr after its attachment to tRNA(Phe) We now show in Saccharomyces cerevisiae that PheRS misacylation of tRNA(Phe) with the more abundant Phe oxidation product o-Tyr is limited by kinetic discrimination against o-Tyr-AMP in the transfer step followed by o-Tyr-AMP release from the synthetic active site. This selective rejection of a non-protein aminoacyl-adenylate is in addition to known kinetic discrimination against certain non-cognates in the activation step as well as catalytic hydrolysis of mispaired aminoacyl-tRNA(Phe) species. We also report an unexpected resistance to cytotoxicity by a S. cerevisiae mutant with ablated post-transfer editing activity when supplemented with o-Tyr, cognate Phe, or Ala, the latter of which is not a substrate for activation by this enzyme. Our phenotypic, metabolomic, and kinetic analyses indicate at least three modes of discrimination against non-protein amino acids by S. cerevisiae PheRS and support a non-canonical role for SccytoPheRS post-transfer editing in response to amino acid stress.


Asunto(s)
Fenilalanina-ARNt Ligasa/metabolismo , Proteínas de Saccharomyces cerevisiae/metabolismo , Saccharomyces cerevisiae/enzimología , Acilación , Adenosina Monofosfato/genética , Adenosina Monofosfato/metabolismo , Alanina/genética , Alanina/metabolismo , Mutación , Fenilalanina/genética , Fenilalanina/metabolismo , Fenilalanina-ARNt Ligasa/genética , ARN de Hongos/genética , ARN de Hongos/metabolismo , ARN de Transferencia de Fenilalanina/genética , ARN de Transferencia de Fenilalanina/metabolismo , Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/genética
4.
J Biol Chem ; 291(7): 3648-57, 2016 Feb 12.
Artículo en Inglés | MEDLINE | ID: mdl-26663080

RESUMEN

Methanol expression regulator 1 (Mxr1p) is a zinc finger protein that regulates the expression of genes encoding enzymes of the methanol utilization pathway in the methylotrophic yeast Pichia pastoris by binding to Mxr1p response elements (MXREs) present in their promoters. Here we demonstrate that Mxr1p is a key regulator of acetate metabolism as well. Mxr1p is cytosolic in cells cultured in minimal medium containing a yeast nitrogen base, ammonium sulfate, and acetate (YNBA) but localizes to the nucleus of cells cultured in YNBA supplemented with glutamate or casamino acids as well as nutrient-rich medium containing yeast extract, peptone, and acetate (YPA). Deletion of Mxr1 retards the growth of P. pastoris cultured in YNBA supplemented with casamino acids as well as YPA. Mxr1p is a key regulator of ACS1 encoding acetyl-CoA synthetase in cells cultured in YPA. A truncated Mxr1p comprising 400 N-terminal amino acids activates ACS1 expression and enhances growth, indicating a crucial role for the N-terminal activation domain during acetate metabolism. The serine 215 residue, which is known to regulate the expression of Mxr1p-activated genes in a carbon source-dependent manner, has no role in the Mxr1p-mediated activation of ACS1 expression. The ACS1 promoter contains an Mxr1p response unit (MxRU) comprising two MXREs separated by a 30-bp spacer. Mutations that abrogate MxRU function in vivo abolish Mxr1p binding to MxRU in vitro. Mxr1p-dependent activation of ACS1 expression is most efficient in cells cultured in YPA. The fact that MXREs are conserved in genes outside of the methanol utilization pathway suggests that Mxr1p may be a key regulator of multiple metabolic pathways in P. pastoris.


Asunto(s)
Acetatos/metabolismo , Coenzima A Ligasas/metabolismo , Proteínas Fúngicas/metabolismo , Regulación Fúngica de la Expresión Génica , Factor 1 de Elongación Peptídica/metabolismo , Pichia/metabolismo , Procesamiento Proteico-Postraduccional , Transporte Activo de Núcleo Celular , Sustitución de Aminoácidos , Coenzima A Ligasas/química , Coenzima A Ligasas/genética , Proteínas Fúngicas/agonistas , Proteínas Fúngicas/química , Proteínas Fúngicas/genética , Eliminación de Gen , Microscopía Fluorescente , Mutagénesis Sitio-Dirigida , Mutación , Factor 1 de Elongación Peptídica/química , Factor 1 de Elongación Peptídica/genética , Fragmentos de Péptidos/química , Fragmentos de Péptidos/genética , Fragmentos de Péptidos/metabolismo , Fosforilación , Pichia/citología , Pichia/enzimología , Pichia/crecimiento & desarrollo , Dominios y Motivos de Interacción de Proteínas , ARN de Hongos/metabolismo , ARN Mensajero/metabolismo , Proteínas Recombinantes de Fusión/química , Proteínas Recombinantes de Fusión/metabolismo , Elementos de Respuesta
5.
Int J Med Mushrooms ; 17(8): 783-97, 2015.
Artículo en Inglés | MEDLINE | ID: mdl-26559864

RESUMEN

MicroRNAs (miRNAs) are a class of small, endogenous, noncoding RNA molecules that negatively regulate gene expression at the transcriptional or the post-transcriptional level. Although a large number of miRNAs have been identified in many species, especially model plants and animals, miRNAs in fungi remain largely unknown. In this study, based on a database of expressed sequence tags in Ganoderma lucidum, 89 potential miRNAs were identified using computational methods. Real-time polymerase chain reaction analysis of miRNA-like samples prepared from G. lucidum at different development stages revealed that miRNA-like RNAs were differentially expressed in different stages. Furthermore, a total of 28 potential targets were found based on near-perfect or perfect complementarity between the randomly selected 9 miRNA-like RNAs and the target sequences, and potential targets for G. lucidum miRNA-like RNAs were predicted. Finally, we studied the expression pattern of 4 target genes in 3 different development stages of G. lucidum to further understand the mechanism of interaction between miRNA-like RNAs and their target genes. Our analysis paves the way toward identifying fungal miRNA-like RNAs that might be involved in various physiological and cellular differentiation processes.


Asunto(s)
MicroARNs/metabolismo , ARN de Hongos/metabolismo , Reishi/genética , Sitios de Unión , Biología Computacional , Secuencias Invertidas Repetidas , MicroARNs/química , Conformación de Ácido Nucleico
6.
J Biol Chem ; 290(37): 22622-37, 2015 Sep 11.
Artículo en Inglés | MEDLINE | ID: mdl-26229103

RESUMEN

Sense and antisense transcripts produced from convergent gene pairs could interfere with the expression of either partner gene. In Schizosaccharomyces pombe, we found that the iss1(+) gene produces two transcript isoforms, including a long antisense mRNA that is complementary to the meiotic cum1(+) sense transcript, inhibiting cum1(+) expression in vegetative cells. Inhibition of cum1(+) transcription was not at the level of its initiation because fusion of the cum1(+) promoter to the lacZ gene showed that activation of the reporter gene occurs in response to low copper conditions. Further analysis showed that the transcription factor Cuf1 and conserved copper-signaling elements (CuSEs) are required for induction of cum1(+)-lacZ transcription under copper deficiency. Insertion of a multipartite polyadenylation signal immediately downstream of iss1(+) led to the exclusive production of a shorter iss1(+) mRNA isoform, thereby allowing accumulation of cum1(+) sense mRNA in copper-limited vegetative cells. This finding suggested that the long iss1(+) antisense mRNA could pair with cum1(+) sense mRNA, thereby producing double-stranded RNA molecules that could induce RNAi. We consistently found that mutant strains for RNAi (dcr1Δ, ago1Δ, rdp1Δ, and clr4Δ) are defective in selectively eliminating cum1(+) sense transcript in the G1 phase of the cell cycle. Taken together, these results describe the first example of a copper-regulated meiotic gene repressed by an antisense transcription mechanism in vegetative cells.


Asunto(s)
Regulación Fúngica de la Expresión Génica/fisiología , Meiosis/fisiología , Mitosis/fisiología , ARN sin Sentido/biosíntesis , ARN de Hongos/metabolismo , Schizosaccharomyces/metabolismo , Fase G1/fisiología , ARN sin Sentido/genética , ARN de Hongos/genética , Schizosaccharomyces/genética , Proteínas de Schizosaccharomyces pombe/genética , Proteínas de Schizosaccharomyces pombe/metabolismo , Factores de Transcripción/genética , Factores de Transcripción/metabolismo
7.
Int J Mol Sci ; 16(6): 12014-34, 2015 May 26.
Artículo en Inglés | MEDLINE | ID: mdl-26016505

RESUMEN

Leptographium qinlingensis is a fungal associate of the Chinese white pine beetle (Dendroctonus armandi) and a pathogen of the Chinese white pine (Pinus armandi) that must overcome the terpenoid oleoresin defenses of host trees. L. qinlingensis responds to monoterpene flow with abundant mechanisms that include export and the use of these compounds as a carbon source. As one of the fungal cytochrome P450 proteins (CYPs), which play important roles in general metabolism, CYP51 (lanosterol 14-α demethylase) can catalyze the biosynthesis of ergosterol and is a target for antifungal drug. We have identified an L. qinlingensis CYP51F1 gene, and the phylogenetic analysis shows the highest homology with the 14-α-demethylase sequence from Grosmannia clavigera (a fungal associate of Dendroctonus ponderosae). The transcription level of CYP51F1 following treatment with terpenes and pine phloem extracts was upregulated, while using monoterpenes as the only carbon source led to the downregulation of CYP5F1 expression. The homology modeling structure of CYP51F1 is similar to the structure of the lanosterol 14-α demethylase protein of Saccharomyces cerevisiae YJM789, which has an N-terminal membrane helix 1 (MH1) and transmembrane helix 1 (TMH1). The minimal inhibitory concentrations (MIC) of terpenoid and azole fungicides (itraconazole (ITC)) and the docking of terpenoid molecules, lanosterol and ITC in the protein structure suggested that CYP51F1 may be inhibited by terpenoid molecules by competitive binding with azole fungicides.


Asunto(s)
Proteínas Fúngicas/química , Proteínas Fúngicas/genética , Saccharomycetales/enzimología , Esterol 14-Desmetilasa/química , Esterol 14-Desmetilasa/genética , Proteínas Fúngicas/efectos de los fármacos , Floema/química , Filogenia , Extractos Vegetales/química , Extractos Vegetales/farmacología , ARN de Hongos/efectos de los fármacos , ARN de Hongos/metabolismo , ARN Mensajero/efectos de los fármacos , ARN Mensajero/metabolismo , Saccharomycetales/efectos de los fármacos , Saccharomycetales/genética , Homología de Secuencia de Ácido Nucleico , Esterol 14-Desmetilasa/efectos de los fármacos , Homología Estructural de Proteína , Terpenos/farmacología
8.
BMC Microbiol ; 14: 308, 2014 Dec 10.
Artículo en Inglés | MEDLINE | ID: mdl-25492044

RESUMEN

BACKGROUND: The oomycete Phytophthora infestans possesses active RNA silencing pathways, which presumably enable this plant pathogen to control the large numbers of transposable elements present in its 240 Mb genome. Small RNAs (sRNAs), central molecules in RNA silencing, are known to also play key roles in this organism, notably in regulation of critical effector genes needed for infection of its potato host. RESULTS: To identify additional classes of sRNAs in oomycetes, we mapped deep sequencing reads to transfer RNAs (tRNAs) thereby revealing the presence of 19-40 nt tRNA-derived RNA fragments (tRFs). Northern blot analysis identified abundant tRFs corresponding to half tRNA molecules. Some tRFs accumulated differentially during infection, as seen by examining sRNAs sequenced from P. infestans-potato interaction libraries. The putative connection between tRF biogenesis and the canonical RNA silencing pathways was investigated by employing hairpin RNA-mediated RNAi to silence the genes encoding P. infestans Argonaute (PiAgo) and Dicer (PiDcl) endoribonucleases. By sRNA sequencing we show that tRF accumulation is PiDcl1-independent, while Northern hybridizations detected reduced levels of specific tRNA-derived species in the PiAgo1 knockdown line. CONCLUSIONS: Our findings extend the sRNA diversity in oomycetes to include fragments derived from non-protein-coding RNA transcripts and identify tRFs with elevated levels during infection of potato by P. infestans.


Asunto(s)
Interacciones Huésped-Patógeno , Estadios del Ciclo de Vida , Phytophthora infestans/fisiología , Enfermedades de las Plantas/microbiología , ARN de Transferencia/metabolismo , Solanum tuberosum/microbiología , Northern Blotting , Regulación Fúngica de la Expresión Génica , Silenciador del Gen , Secuenciación de Nucleótidos de Alto Rendimiento , Phytophthora infestans/genética , Phytophthora infestans/metabolismo , ARN de Hongos/química , ARN de Hongos/genética , ARN de Hongos/metabolismo , ARN de Transferencia/química , ARN de Transferencia/genética
9.
Proc Natl Acad Sci U S A ; 109(28): 11156-9, 2012 Jul 10.
Artículo en Inglés | MEDLINE | ID: mdl-22733749

RESUMEN

The limited therapeutic arsenal and the increase in reports of fungal resistance to multiple antifungal agents have made fungal infections a major therapeutic challenge. The polyene antibiotics are the only group of antifungal antibiotics that directly target the plasma membrane via a specific interaction with the main fungal sterol, ergosterol, often resulting in membrane permeabilization. In contrast to other polyene antibiotics that form pores in the membrane, the mode of action of natamycin has remained obscure but is not related to membrane permeabilization. Here, we demonstrate that natamycin inhibits growth of yeasts and fungi via the immediate inhibition of amino acid and glucose transport across the plasma membrane. This is attributable to ergosterol-specific and reversible inhibition of membrane transport proteins. It is proposed that ergosterol-dependent inhibition of membrane proteins is a general mode of action of all the polyene antibiotics, of which some have been shown additionally to permeabilize the plasma membrane. Our results imply that sterol-protein interactions are fundamentally important for protein function even for those proteins that are not known to reside in sterol-rich domains.


Asunto(s)
Antibacterianos/química , Polienos/química , Aminoácidos/química , Antiinfecciosos/farmacología , Aspergillus niger/metabolismo , Transporte Biológico , Membrana Celular/metabolismo , ADN Complementario/metabolismo , Ergosterol/química , Regulación Fúngica de la Expresión Génica , Glucosa/metabolismo , Modelos Biológicos , Natamicina/farmacología , Hibridación de Ácido Nucleico , Análisis de Secuencia por Matrices de Oligonucleótidos , Sistemas de Lectura Abierta , Permeabilidad , ARN/metabolismo , ARN de Hongos/metabolismo , Saccharomyces cerevisiae/metabolismo
10.
J Biol Chem ; 286(46): 39750-9, 2011 Nov 18.
Artículo en Inglés | MEDLINE | ID: mdl-21949122

RESUMEN

DEAD-box protein (Dbp) family members are essential for gene expression; however, their precise roles and regulation are not fully defined. During messenger (m)RNA export, Gle1 bound to inositol hexakisphosphate (IP(6)) acts via Dbp5 to facilitate remodeling of mRNA-protein complexes. In contrast, here we define a novel Gle1 role in translation initiation through regulation of a different DEAD-box protein, the initiation factor Ded1. We find that Gle1 physically and genetically interacts with Ded1. Surprisingly, whereas Gle1 stimulates Dbp5, it inhibits Ded1 ATPase activity in vitro, and IP(6) does not affect this inhibition. Functionally, a gle1-4 mutant specifically suppresses initiation defects in a ded1-120 mutant, and ded1 and gle1 mutants have complementary perturbations in AUG start site recognition. Consistent with this role in initiation, Gle1 inhibits translation in vitro in competent extracts. These results indicate that Gle1 has a direct role in initiation and negatively regulates Ded1. Together, the differential regulation of two distinct DEAD-box proteins by a common factor (Gle1) establishes a new paradigm for controlling gene expression and coupling translation with mRNA export.


Asunto(s)
ARN Helicasas DEAD-box/metabolismo , Regulación Fúngica de la Expresión Génica/fisiología , Proteínas de Complejo Poro Nuclear/metabolismo , Iniciación de la Cadena Peptídica Traduccional/fisiología , Proteínas de Saccharomyces cerevisiae/metabolismo , Saccharomyces cerevisiae/metabolismo , Transporte Biológico Activo/fisiología , ARN Helicasas DEAD-box/genética , Mutación , Proteínas de Complejo Poro Nuclear/genética , Proteínas de Transporte Nucleocitoplasmático/genética , Proteínas de Transporte Nucleocitoplasmático/metabolismo , ARN de Hongos/genética , ARN de Hongos/metabolismo , ARN Mensajero/genética , ARN Mensajero/metabolismo , Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/genética
11.
Science ; 333(6044): 880-2, 2011 Aug 12.
Artículo en Inglés | MEDLINE | ID: mdl-21836016

RESUMEN

Plants and their arbuscular mycorrhizal fungal symbionts interact in complex underground networks involving multiple partners. This increases the potential for exploitation and defection by individuals, raising the question of how partners maintain a fair, two-way transfer of resources. We manipulated cooperation in plants and fungal partners to show that plants can detect, discriminate, and reward the best fungal partners with more carbohydrates. In turn, their fungal partners enforce cooperation by increasing nutrient transfer only to those roots providing more carbohydrates. On the basis of these observations we conclude that, unlike many other mutualisms, the symbiont cannot be "enslaved." Rather, the mutualism is evolutionarily stable because control is bidirectional, and partners offering the best rate of exchange are rewarded.


Asunto(s)
Glomeromycota/fisiología , Medicago truncatula/microbiología , Medicago truncatula/fisiología , Micorrizas/fisiología , Raíces de Plantas/microbiología , Simbiosis , Evolución Biológica , Metabolismo de los Hidratos de Carbono , Carbono/metabolismo , Glomeromycota/genética , Glomeromycota/crecimiento & desarrollo , Datos de Secuencia Molecular , Micorrizas/genética , Micorrizas/crecimiento & desarrollo , Fósforo/metabolismo , Raíces de Plantas/fisiología , ARN de Hongos/metabolismo , Especificidad de la Especie
12.
Microb Pathog ; 48(2): 91-6, 2010 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-19874884

RESUMEN

Trichophyton rubrum is a dermatophyte that infects human skin and nails. Its growth on keratin as its carbon source shifts the ambient pH from acidic to alkaline, which may be an efficient strategy for its successful infection and maintenance in the host. In this study, we used suppression subtractive hybridization to identify genes preferentially expressed in T. rubrum incubated at either pH 5.0 or pH 8.0. The functional grouping of the 341 overexpressed unigenes indicated proteins putatively involved in diverse cellular processes, such as membrane remodeling, cellular transport, metabolism, cellular protection, fungal pathogenesis, gene regulation, interaction with the environment, and iron uptake. Although the basic metabolic machinery identified under both growth conditions seems to be functionally similar, distinct genes are upregulated at acidic or alkaline pHs. We also isolated a large number of genes of unknown function, probably unique to T. rubrum or dermatophytes. Interestingly, the transcriptional profiling of several genes in a pacC(-) mutant suggests that, in T. rubrum, the transcription factor PacC has a diversity of metabolic functions, in response to either acidic or alkaline ambient pH.


Asunto(s)
Perfilación de la Expresión Génica , Regulación Fúngica de la Expresión Génica , Transducción de Señal , Trichophyton/genética , Trichophyton/metabolismo , Clonación Molecular , ADN Complementario , ADN de Hongos/genética , ADN de Hongos/metabolismo , Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Humanos , Concentración de Iones de Hidrógeno , Queratinas/metabolismo , Mutación , Hibridación de Ácido Nucleico , Análisis de Secuencia por Matrices de Oligonucleótidos , ARN de Hongos/genética , ARN de Hongos/metabolismo , ARN Mensajero/genética , ARN Mensajero/metabolismo , Factores de Transcripción/genética , Factores de Transcripción/metabolismo , Trichophyton/crecimiento & desarrollo
13.
BMC Genomics ; 10: 75, 2009 Feb 10.
Artículo en Inglés | MEDLINE | ID: mdl-19203396

RESUMEN

BACKGROUND: Since the discovery of the antibacterial activity of penicillin by Fleming 80 years ago, improvements of penicillin titer were essentially achieved by classical strain improvement through mutagenesis and screening. The recent sequencing of Penicillium chrysogenum strain Wisconsin1255-54 and the availability of genomics tools such as DNA-microarray offer new perspective. RESULTS: In studies on beta-lactam production by P. chrysogenum, addition and omission of a side-chain precursor is commonly used to generate producing and non-producing scenarios. To dissect effects of penicillinG production and of its side-chain precursor phenylacetic acid (PAA), a derivative of a penicillinG high-producing strain without a functional penicillin-biosynthesis gene cluster was constructed. In glucose-limited chemostat cultures of the high-producing and cluster-free strains, PAA addition caused a small reduction of the biomass yield, consistent with PAA acting as a weak-organic-acid uncoupler. Microarray-based analysis on chemostat cultures of the high-producing and cluster-free strains, grown in the presence and absence of PAA, showed that: (i) Absence of a penicillin gene cluster resulted in transcriptional upregulation of a gene cluster putatively involved in production of the secondary metabolite aristolochene and its derivatives, (ii) The homogentisate pathway for PAA catabolism is strongly transcriptionally upregulated in PAA-supplemented cultures (iii) Several genes involved in nitrogen and sulfur metabolism were transcriptionally upregulated under penicillinG producing conditions only, suggesting a drain of amino-acid precursor pools. Furthermore, the number of candidate genes for penicillin transporters was strongly reduced, thus enabling a focusing of functional analysis studies. CONCLUSION: This study demonstrates the usefulness of combinatorial transcriptome analysis in chemostat cultures to dissect effects of biological and process parameters on gene expression regulation. This study provides for the first time clear-cut target genes for metabolic engineering, beyond the three genes of the beta-lactam pathway.


Asunto(s)
Penicilina G/metabolismo , Penicillium chrysogenum/genética , Fenilacetatos/metabolismo , Medios de Cultivo , Eliminación de Gen , Dosificación de Gen , Perfilación de la Expresión Génica , Regulación Fúngica de la Expresión Génica , Genoma Fúngico , Familia de Multigenes , Análisis de Secuencia por Matrices de Oligonucleótidos , Penicillium chrysogenum/metabolismo , ARN de Hongos/metabolismo
14.
Mycopathologia ; 165(1): 51-9, 2008 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-17968674

RESUMEN

Growth and production of type-B trichothecenes mycotoxins by the Fusarium graminearum strain CBS 185.32 were compared in GYEP medium supplemented with Mg(2+) at different concentrations (0-4 mM). Mg(2+) led to a strong decrease in toxin accumulation without affecting the mycelial growth, suggesting a specific Mg(2+) effect on fungal secondary metabolism. Expression of Tri5, Tri6, and Tri12 genes was followed throughout the time courses of type-B trichothecenes (TCTB) yield in standard and 2 mM Mg(2+)-supplemented GYEP media. Mg(2+) addition significantly decreased Tri5, Tri6, and Tri12 expression. The inhibition of toxin production by Mg(2+ )was shown to be highly correlated with inhibition of Tri5 transcription and, to a lesser extend, of Tri6 and Tri12. This is the first report of a transcriptional control of TCTB production by Mg(2+).


Asunto(s)
Proteínas Fúngicas/genética , Fusarium/efectos de los fármacos , Regulación Fúngica de la Expresión Génica/efectos de los fármacos , Magnesio/farmacología , Tricotecenos/biosíntesis , Fusarium/genética , Fusarium/metabolismo , ARN de Hongos/genética , ARN de Hongos/metabolismo , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa
15.
Nucleic Acids Res ; 34(1): 140-51, 2006.
Artículo en Inglés | MEDLINE | ID: mdl-16407331

RESUMEN

5-fluorouracil (5-FU) is a widely used anticancer drug that disrupts pyrimidine nucleotide pool balances and leads to uracil incorporation in DNA, which is then recognized and removed by the uracil base excision repair (BER) pathway. Using complementary biochemical and genetic approaches we have examined the role of uracil BER in the cell killing mechanism of 5-FU. A yeast strain lacking the enzyme uracil DNA glycosylase (Ung1), which excises uracil from the DNA backbone leaving an abasic site, showed significant protection against the toxic effects of 5-FU, a G1/S cell cycle arrest phenotype, and accumulated massive amounts of U/A base pairs in its genome (approximately 4% of T/A pairs were now U/A). A strain lacking the major abasic site endonuclease of Saccharomyces cerevisiae (Apn1) showed significantly increased sensitivity to 5-FU with G2/M arrest. Thus, efficient processing of abasic sites by this enzyme is protective against the toxic effects of 5-FU. However, contrary to expectations, the Apn1 deficient strain did not accumulate intact abasic sites, indicating that another repair pathway attempts to process these sites in the absence Apn1, but that this process has catastrophic effects on genome integrity. These findings suggest that new strategies for chemical intervention targeting BER could enhance the effectiveness of this widely used anticancer drug.


Asunto(s)
Antimetabolitos Antineoplásicos/toxicidad , Daño del ADN , Reparación del ADN , Fluorouracilo/toxicidad , Uracilo/metabolismo , Antimetabolitos Antineoplásicos/metabolismo , Ciclo Celular/efectos de los fármacos , ADN de Hongos/metabolismo , Fluorouracilo/metabolismo , ARN de Hongos/metabolismo , Saccharomyces cerevisiae/efectos de los fármacos , Saccharomyces cerevisiae/genética
16.
Plant Physiol ; 137(4): 1319-30, 2005 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-15749992

RESUMEN

A full-length cDNA showing high similarity to previously described CuZn superoxide dismutases (SODs) was identified in an expressed sequence tag collection from germinated spores of the arbuscular mycorrhizal fungus Gigaspora margarita (BEG 34). The corresponding gene sequence, named GmarCuZnSOD, is composed of four exons. As revealed by heterologous complementation assays in a yeast mutant, GmarCuZnSOD encodes a functional polypeptide able to confer increased tolerance to oxidative stress. The GmarCuZnSOD RNA was differentially expressed during the fungal life cycle; highest transcript levels were found in fungal structures inside the roots as observed on two host plants, Lotus japonicus and Medicago truncatula. These structures also reacted positively to 3,3'-diaminobenzidine, used to localize H2O2 accumulation. This H2O2 is likely to be produced by CuZnSOD activity since treatment with a chelator of copper ions, generally used to inhibit CuZnSODs, strongly reduced the 3,3'-diaminobenzidine deposits. A slight induction of GmarCuZnSOD gene expression was also observed in germinated spores exposed to L. japonicus root exudates, although the response showed variation in independent samples. These results provide evidence of the occurrence, in an arbuscular mycorrhizal fungus, of a functional SOD gene that is modulated during the life cycle and may offer protection as a reactive oxygen species-inactivating system against localized host defense responses raised in arbuscule-containing cells.


Asunto(s)
Fabaceae/microbiología , Micorrizas/enzimología , Micorrizas/genética , Superóxido Dismutasa/genética , Simbiosis/genética , Secuencia de Aminoácidos , Secuencia de Bases , ADN Complementario/genética , ADN de Hongos/genética , Fabaceae/metabolismo , Expresión Génica , Genes Fúngicos , Prueba de Complementación Genética , Peróxido de Hidrógeno/metabolismo , Lotus/metabolismo , Lotus/microbiología , Medicago truncatula/metabolismo , Medicago truncatula/microbiología , Datos de Secuencia Molecular , Filogenia , Raíces de Plantas/metabolismo , Raíces de Plantas/microbiología , ARN de Hongos/genética , ARN de Hongos/metabolismo , ARN Mensajero/genética , ARN Mensajero/metabolismo , Superóxido Dismutasa/metabolismo , Simbiosis/fisiología , Regulación hacia Arriba
17.
FEMS Microbiol Lett ; 242(1): 37-44, 2005 Jan 01.
Artículo en Inglés | MEDLINE | ID: mdl-15621417

RESUMEN

Phanerochaete chrysosporium has been thoroughly studied as a microbial model for lignin degradation. The enzymes lignin peroxidase (LiP) and manganese peroxidase (MnP), both encoded by several genes, play the main role in the cleavage of different lignin substructures. In this work, the expression of specific LiP and MnP transcripts in liquid medium and in a wood-containing soil system was studied by reverse transcription-PCR and subsequent cloning and sequencing of the products obtained. Splice variants of different LiP and MnP transcripts were observed in wood-containing soil incubations and in liquid cultures. The processed transcripts contained different numbers of complete introns. Since the presence of stop codons in several of these introns would prevent the synthesis of active enzyme, we propose that these transcripts arise as a result of incomplete processing rather than alternative splicing. Interestingly, analysis of splice variants from mnp genes led to the identification of a fourth actively transcribed gene coding for MnP in P. chrysosporium.


Asunto(s)
Regulación Fúngica de la Expresión Génica , Lignina/metabolismo , Peroxidasas/genética , Phanerochaete/genética , Procesamiento Postranscripcional del ARN , Codón de Terminación/fisiología , ADN Complementario/química , ADN de Hongos/química , Proteínas Fúngicas/genética , Intrones , Peroxidasas/biosíntesis , Phanerochaete/metabolismo , ARN de Hongos/genética , ARN de Hongos/aislamiento & purificación , ARN de Hongos/metabolismo , ARN Mensajero/genética , ARN Mensajero/aislamiento & purificación , ARN Mensajero/metabolismo , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa , Análisis de Secuencia de ADN
18.
Br Poult Sci ; 46(6): 673-8, 2005 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-16428109

RESUMEN

1. The carry-over effects of supplementing Leghorn-type chickens with yeast RNA as a dietary source of nucleotides for 4 weeks on growth, lymphoid organ weights and immune responses were assessed in a 12-week study. 2. A commercial starter feed supplemented with 0 (control), 5 (LR) or 10 (HR) g yeast RNA/kg was offered to 1-d-old male ISA Brown chicks for 4 weeks, and then all birds were given a commercial pullet grower feed for another 8 weeks. Growth performance, antibody responses to sheep red blood cells (SRBC) and cutaneous reactivity of toe webs to phytohaemagglutinin (PHA)-M were measured at 4-week intervals. 3. Growth rates, feed intake and feed efficiency were not affected by dietary yeast RNA during the supplementary period, but birds previously offered the HR diet grew faster than control birds during weeks 4 to 8.4. LR-fed birds had a higher spleen weight relative to body weight (BW) than control birds at week 4, but this effect was not detected at other times. 5. Serum primary antibody levels against SRBC were not affected by dietary yeast RNA at any time. 6. The toe-web PHA response was significantly higher at week 8 in control birds than in birds previously given the LR diet, although no difference among dietary treatments was observed at other times. 7. It is concluded that the addition of yeast RNA as a source of nucleotides to a commercial diet selectively stimulated the development of the spleen in young birds, but this effect did not persist into a later stage of the bird's life.


Asunto(s)
Fenómenos Fisiológicos Nutricionales de los Animales , Pollos/inmunología , Tejido Linfoide/inmunología , Tejido Linfoide/metabolismo , Nucleótidos/metabolismo , ARN de Hongos/administración & dosificación , ARN de Hongos/metabolismo , Alimentación Animal , Animales , Anticuerpos/sangre , Suplementos Dietéticos , Tejido Linfoide/efectos de los fármacos , Masculino , Fitohemaglutininas , ARN de Hongos/farmacología , Saccharomyces cerevisiae
19.
Appl Microbiol Biotechnol ; 64(4): 525-30, 2004 May.
Artículo en Inglés | MEDLINE | ID: mdl-14689250

RESUMEN

A cDNA of a structural gene encoding pyranose 2-oxidase (P2O) from Trametes ochracea strain MB49 was cloned into Escherichia coli strain BL21(DE3) on a multicopy plasmid under the control of the trc promoter. Synthesis of P2O was studied in batch cultures in LB or M9-based mineral medium at 28 degrees C. While there was a low specific activity of P2O in LB medium, the enzyme was synthesised constitutively in mineral medium and represented 3% of the cell soluble protein (0.3 U mg(-1)). The effect of isopropyl beta-D-thiogalactoside on the expression of P2O was studied in mineral medium at 25 and 28 degrees C. The synthesis of P2O at 28 degrees C corresponded to 39% of the cell soluble protein but the major portion of P2O (93%) was in the form of non-active inclusion bodies (activity of P2O equalled 0.19 U mg(-1)). At 25 degrees C, the amount of P2O represented 14% of the cell soluble protein and the activity of P2O was 1.1 U mg(-1). The soluble enzyme represented 70% of the total amount of P2O.


Asunto(s)
Deshidrogenasas de Carbohidratos/genética , Deshidrogenasas de Carbohidratos/metabolismo , Polyporales/enzimología , Deshidrogenasas de Carbohidratos/aislamiento & purificación , Clonación Molecular , Citoplasma/enzimología , ADN Complementario/química , ADN Complementario/aislamiento & purificación , Escherichia coli/genética , Escherichia coli/crecimiento & desarrollo , Escherichia coli/metabolismo , Regulación Bacteriana de la Expresión Génica , Cuerpos de Inclusión/enzimología , Datos de Secuencia Molecular , Polyporales/genética , Regiones Promotoras Genéticas , ARN de Hongos/aislamiento & purificación , ARN de Hongos/metabolismo , Proteínas Recombinantes/biosíntesis , Proteínas Recombinantes/metabolismo , Análisis de Secuencia de ADN , Temperatura
20.
Free Radic Biol Med ; 35(8): 889-900, 2003 Oct 15.
Artículo en Inglés | MEDLINE | ID: mdl-14556853

RESUMEN

The Yap1 transcription factor regulates yeast responses to H2O2 and to several unrelated chemicals and metals. Activation by H2O2 involves Yap1 Cys303-Cys598 intra-molecular disulfide bond formation directed by the H2O2 sensor Orp1/Gpx3. We show here that the electrophile N-ethylmaleimide activates Yap1 by covalent modification of Yap1 C-terminal Cys598, Cys620, and Cys629, in an Orp1 and Yap1-oxidation-independent way, thus establishing an alternate and distinct mode of Yap1 activation. We also show that menadione, a superoxide anion generator and a highly reactive electrophile, operates both modes of Yap1 activation. Further, the Yap1 C-terminal domain reactivity towards other electrophiles (4-hydroxynonenal, iodoacetamide) and metals (cadmium, selenium) suggests a common mechanism for sensing thiol reactive chemicals, involving thiol chemical modification. We propose that Yap1 has two distinct molecular redox centers, one triggered by ROS (hydroperoxides and the superoxide anion) and the other by chemicals with thiol reactivity (electrophiles and divalent heavy metals cations). These data indicate that yeast cells cannot sense these compounds through the same molecular devices, albeit they are all electrophilic.


Asunto(s)
Peróxido de Hidrógeno/farmacología , Oxidantes/farmacología , Proteínas de Saccharomyces cerevisiae/metabolismo , Saccharomyces cerevisiae/metabolismo , Transducción de Señal , Compuestos de Sulfhidrilo/metabolismo , Factores de Transcripción/metabolismo , Aldehídos/farmacología , Antifibrinolíticos/farmacología , Cadmio/farmacología , Disulfuros/metabolismo , Inhibidores Enzimáticos/farmacología , Glutatión Peroxidasa/metabolismo , Peróxido de Hidrógeno/metabolismo , Yodoacetamida/farmacología , Espectrometría de Masas , Oxidación-Reducción , ARN de Hongos/metabolismo , Proteínas Recombinantes de Fusión/genética , Proteínas Recombinantes de Fusión/metabolismo , Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/genética , Selenio/farmacología , Superóxidos/metabolismo , Factores de Transcripción/genética , Vitamina K 3/farmacología
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