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1.
Molecules ; 26(10)2021 May 14.
Artículo en Inglés | MEDLINE | ID: mdl-34069178

RESUMEN

To meet the growing interest in natural antibacterial agents, we evaluated the physicochemical and biological properties of the folk medicine known as "five thieves' oil" (Polish name: olejek pieciu zlodziei). Five thieves' oil consists of a mixture of five oils: rosemary, lemon, clove, eucalyptus, and cinnamon. In this study, we performed gas chromatography, FTIR, and UV-vis spectroscopic analysis, as well as L-a-b color tests, contact angle determination, and surface tension determination. To verify its antibacterial activity, the metabolic activity and changes in cell membrane permeability of bacteria of the genus Pseudomonas were studied. As a result, it was found that among the constituent oils, the oils of clove and cinnamon were the least volatile and, at the same time, had the strongest antibacterial activity. However, a mix of all the oils also showed comparable activity, which was even more pronounced for the oils after 4 weeks of aging. This effect can be linked to the high content of terpene derivatives such as eugenol and cinnamaldehyde, which can cause changes in bacterial membrane permeability, affecting cell activity and survival. This study is the first to characterize the constituents of the popular folk medicine five thieves' oil, confirming and explaining its strong antibacterial activity, thus constituting a significant contribution to contemporary health education.


Asunto(s)
Medicina Tradicional , Aceites de Plantas/química , Antiinfecciosos/farmacología , Bacterias/citología , Bacterias/efectos de los fármacos , Bacterias/metabolismo , Permeabilidad de la Membrana Celular/efectos de los fármacos , Espectroscopía de Resonancia Magnética , Pruebas de Sensibilidad Microbiana , Refractometría , Espectrometría de Fluorescencia , Espectrofotometría Ultravioleta , Espectroscopía Infrarroja por Transformada de Fourier , Propiedades de Superficie , Compuestos Orgánicos Volátiles/análisis
2.
Lasers Med Sci ; 36(6): 1139-1150, 2021 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-33387079

RESUMEN

Radiations emitted by low power radiation sources have been applied for therapeutic proposals due to their capacity of inactivating bacteria and cancer cells in photodynamic therapy and stimulating tissue cells in photobiomodulation. Exposure to these radiations could increase cell proliferation in bacterial cultures under stressful conditions. Cells in infected or not infected tissue injuries are also under stressful conditions and photobiomodulation-induced regenerative effect on tissue injuries could be related to effects on stressed cells. The understanding of the effects on cells under stressful conditions could render therapies based on photobiomodulation more efficient as well as expand them. Thus, the objective of this review was to update the studies reporting photobiomodulation on prokaryotic and eukaryotic cells under stress conditions. Exposure to radiations emitted by low power radiation sources could induce adaptive responses enabling cells to survive in stressful conditions, such as those experienced by bacteria in their host and by eukaryotic cells in injured tissues. Adaptive responses could be the basis for clinical photobiomodulation applications, either considering their contraindication for treatment of infected injuries or indication for treatment of injuries, inflammatory process resolution, or tissue regeneration.


Asunto(s)
Bacterias/citología , Bacterias/efectos de la radiación , Células Eucariotas/efectos de la radiación , Terapia por Luz de Baja Intensidad , Estrés Fisiológico/efectos de la radiación , Humanos
3.
Sci Rep ; 9(1): 8407, 2019 06 10.
Artículo en Inglés | MEDLINE | ID: mdl-31182762

RESUMEN

The Cold Atmospheric pressure Plasma (CAP) technology is an emerging technology used for conditioning and microbiological decontamination of biomaterials including food. A novel tool for inactivation of juice background spoilage microorganisms, as well as high count of inoculated yeast while maintaining physicochemical properties in tomato juice - CAP technology was utilized in this study. Dry matter content and pH were not significantly influenced by CAP generated in GlidArc reactor. Small increase of lycopene, and slight loss of vitamin C content were observed.


Asunto(s)
Presión Atmosférica , Fenómenos Químicos , Conservación de Alimentos , Jugos de Frutas y Vegetales/microbiología , Gases em Plasma/química , Refrigeración , Solanum lycopersicum/química , Bacterias/citología , Saccharomyces cerevisiae/citología
4.
J Environ Sci (China) ; 76: 121-132, 2019 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-30528004

RESUMEN

It was focused on the effect of different sludge concentrations on the performances of an algal-activated sludge symbiotic system in terms of wastewater treatment, algal-activated sludge characteristics and community structure. The results showed that the highest nutrient removal efficiencies were obtained in the reactor R2 with soluble chemical oxygen demand (sCOD), ammonia nitrogen (NH4+-N) and phosphate (PO43- -P) removal efficiencies of (90.6±2.3)%, (97.69±2.6)% and (83.81±2.3)%, respectively. Further investigation exhibited that sludge concentration has a great effect on the dissolved oxygen (DO) concentration, the pH, the growth of algae and the extracellular polymeric substance (EPS) production, which resulted in influencing the settleability and the performance of symbiotic system. The denaturing gradient gel electrophoresis (DGGE) analysis demonstrated that the sludge concentration had a selective power for particular members of algae. Meantime, the stimulated algal population would selectively excite the members of bacteria benefited for the formation of algal-bacterial consortia. The variation of microbial compositions, which was influenced by the different sludge concentrations, might be ultimately responsible for the different treatment performances.


Asunto(s)
Bacterias/metabolismo , Reactores Biológicos/microbiología , Microbiota , Aguas del Alcantarillado/microbiología , Simbiosis , Bacterias/citología , Matriz Extracelular de Sustancias Poliméricas/metabolismo , Nitrógeno/aislamiento & purificación , Nitrógeno/metabolismo , Fósforo/aislamiento & purificación , Fósforo/metabolismo , Aguas del Alcantarillado/química
5.
Microb Pathog ; 116: 84-90, 2018 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-29339306

RESUMEN

Facile, eco-friendly synthesis of metal nanoparticles has been proposed as a cost effective method. In the present study, we propose the facile synthesis of silver-silver chloride (Ag-AgCl) nanoparticles (NPs) using the medicinally important Agrimonia pilosa plant extract without addition of capping or stabilizing agents. The Ag-AgCl NPs synthesis was observed at 40 °C after 10 min incubation; the synthesis of Ag-AgCl NPs was indicated by color change and confirmed by UV-vis spectroscopic peak at 454 nm. TEM analysis confirmed Ag-AgCl NPs were 10-20 nm in size and spherical, and oval in shape. Elemental composition was determined by energy dispersive X-ray analysis, and crystalline structure was confirmed by X-ray diffraction spectroscopy. Different phytocomponents present in the plant extract were analyzed by Gas Chromatography-Mass spectrometry, and the interaction of biomolecules in reduction process was analyzed by Fourier transform infrared spectroscopy studies. The synthesized Ag-AgCl NPs showed significant antibacterial efficiency, analyzed by well diffusion assay against pathogenic bacteria including Bacillus cereus, Listeria monocytogenes, Staphylococcus aureus, Staphylococcus saprophyticus, Escherichia coli, Pseudomonas putida. Minimum inhibitory concentration and minimum bactericidal concentration were evaluated by microbroth dilution, and spread plate method, respectively. The possible mechanism of bacterial growth inhibition is due to changes in bacterial cell wall morphology that was studied by FE-SEM analysis.


Asunto(s)
Agrimonia/metabolismo , Antibacterianos/metabolismo , Bacterias/citología , Bacterias/efectos de los fármacos , Nanopartículas del Metal , Plata/metabolismo , Bacillus cereus , Recuento de Colonia Microbiana , Escherichia coli , Cromatografía de Gases y Espectrometría de Masas , Listeria monocytogenes , Pruebas de Sensibilidad Microbiana , Viabilidad Microbiana/efectos de los fármacos , Microscopía Electrónica de Transmisión , Extractos Vegetales/metabolismo , Pseudomonas putida , Plata/química , Espectrometría por Rayos X , Espectrofotometría , Espectroscopía Infrarroja por Transformada de Fourier , Staphylococcus aureus , Staphylococcus saprophyticus , Temperatura , Difracción de Rayos X
6.
Biochem Biophys Res Commun ; 495(1): 273-279, 2018 01 01.
Artículo en Inglés | MEDLINE | ID: mdl-29106956

RESUMEN

Although pancreatic enzyme replacement therapy (PERT) is effective in the alleviation of pancreatic exocrine insufficiency (PEI)-related symptoms in patients with chronic pancreatitis, its mechanism of action is poorly understood. Recent studies suggest that the intestinal microbiota is associated with the pathogenesis of chronic pancreatitis. Therefore, we hypothesized that PERT exerts its effect by modifying the intestinal microbiota in addition to its presumed role in promoting fat and protein absorption. To explore the mechanism of action of PERT, we analyzed the intestinal microbiotas of two groups of mice treated with either pancrelipase or tap water by using 16S rRNA amplicon sequencing. The results revealed that the bacterial compositions of the pancrelipase-treated mice were significantly different from those of the control samples. Akkermansia muciniphila, a key beneficial bacterium in the intestinal tract, showed a higher relative abundance in the pancrelipase-treated samples than in the control samples. Lactobacillus reuteri, a widely used probiotic bacterium known to relieve intestinal inflammation, also showed a higher relative abundance in the pancrelipase-treated samples. These results suggested that PERT induces the colonization of beneficial bacteria, thereby contributing to the attenuation of PEI-associated symptoms in addition to improvement of the nutritional state.


Asunto(s)
Bacterias/citología , Suplementos Dietéticos/microbiología , Terapia de Reemplazo Enzimático/métodos , Microbioma Gastrointestinal/fisiología , Páncreas/enzimología , Pancrelipasa/administración & dosificación , Administración Oral , Animales , Bacterias/clasificación , Bacterias/efectos de los fármacos , Fármacos Gastrointestinales , Microbioma Gastrointestinal/efectos de los fármacos , Masculino , Ratones , Ratones Endogámicos C57BL
7.
Prog Lipid Res ; 68: 26-36, 2017 10.
Artículo en Inglés | MEDLINE | ID: mdl-28889933

RESUMEN

Conjugated linoleic acid (CLA) has been shown to exert various potential physiological properties including anti-carcinogenic, anti-obesity, anti-cardiovascular and anti-diabetic activities, and consequently has been considered as a promising food supplement. Bacterial biosynthesis of CLA is an attractive approach for commercial production due to its high isomer-selectivity and convenient purification process. Many bacterial species have been reported to convert free linoleic acid (LA) to CLA, hitherto only the precise CLA-producing mechanisms in Propionibacterium acnes and Lactobacillus plantarum have been illustrated completely, prompting the development of recombinant technology used in CLA production. The purpose of the article is to review the bacterial CLA producers as well as the recent progress on describing the mechanism of microbial CLA-production. Furthermore, the advances and potential in the heterologous expression of CLA genetic determinants will be presented.


Asunto(s)
Bacterias/metabolismo , Ácidos Linoleicos Conjugados/biosíntesis , Animales , Bacterias/citología , Hongos/citología , Hongos/metabolismo , Humanos , Ácidos Linoleicos Conjugados/química
8.
Biosens Bioelectron ; 91: 857-862, 2017 May 15.
Artículo en Inglés | MEDLINE | ID: mdl-28160653

RESUMEN

Microbial infections are rapidly increasing; however most of the existing microbiological and molecular detection methods are time consuming and/or cannot differentiate between the viable and dead cells which may overestimate the risk of infections. Therefore, a bioelectrochemical sensing platform with a high potential to the microbial-electrode interactions was designed based on decorated graphene oxide (GO) sheet with alumina (Al2O3) nanocrystals. GO-Al2O3 nanocomposite was synthesized using self-assembly of GO and Al2O3 and characterized using the scanning electron microscopy (SEM), transmission electron microscopy (TEM), x-ray diffraction (XRD), Raman-spectroscopy, electrochemical impedance spectroscopy (EIS) and cyclic voltammetry (CV). Enhancement of electrocatalytic activity of the composite-modified electrode was demonstrated. Thus, using the GO-Al2O3 nanocomposite modified electrode, the cell viability was determined by monitoring the bioelectrochemical response of the living microbial cells (bacteria and yeast) upon stimulation with carbon source. The bioelectrochemical assay was optimized to obtain high sensitivity and the method was applied to monitor cell viability and screen susceptibility of metabolically active cells (E. coli, B. subtilis, Enterococcus, P. aeruginosa and Salmonella typhi) to antibiotics such as ampicillin and kanamycin. Therefore, the developed assay is suitable for cell proliferation and cytotoxicity testing.


Asunto(s)
Óxido de Aluminio/química , Bacterias/citología , Técnicas Electroquímicas/métodos , Grafito/química , Viabilidad Microbiana , Levaduras/citología , Antiinfecciosos/farmacología , Bacterias/efectos de los fármacos , Técnicas Biosensibles/métodos , Electrodos , Pruebas de Sensibilidad Microbiana/métodos , Nanocompuestos/química , Nanocompuestos/ultraestructura , Levaduras/efectos de los fármacos
9.
Environ Pollut ; 223: 657-664, 2017 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-28196719

RESUMEN

A laboratory study was conducted to evaluate the impact of bioaugmentation plus biostimulation (BR, added both nutrients and bacterial consortia), and natural attenuation (NA) on hydrocarbon degradation efficiency and microflora characterization during remediation of a freshly contaminated soil. After 112 days of remediation, the initial level of total petroleum hydrocarbon (TPH) (61,000 mg/kg soil) was reduced by 4.5% and 5.0% in the NA and BR treatments, respectively. Bioremediation did not significantly enhance TPH biodegradation compared to natural attenuation. The degradation of the aliphatic fraction was the most active with the degradation rate of 30.3 and 28.7 mg/kg/day by the NA and BR treatments, respectively. Soil microbial activities and counts in soil were generally greater for bioremediation than for natural attenuation. MiSeq sequencing indicated that the diversity and structure of microbial communities were affected greatly by bioremediation. In response to bioremediation treatment, Promicromonospora, Pseudomonas, Microcella, Mycobacterium, Alkanibacter, and Altererythrobacter became dominant genera in the soil. The result indicated that combining bioaugmentation with biostimulation did not improve TPH degradation, but soil microbial activities and structure of microbial communities are sensitive to bioremediation in short-term and heavily oil-contaminated soil.


Asunto(s)
Bacterias/aislamiento & purificación , Bacterias/metabolismo , Biodegradación Ambiental , Hidrocarburos/metabolismo , Petróleo/metabolismo , Microbiología del Suelo , Contaminantes del Suelo/metabolismo , Suelo/química , Bacterias/citología , Bacterias/genética , China , Recuento de Colonia Microbiana , ADN Bacteriano/análisis , Ecosistema , Pseudomonas/citología , Pseudomonas/genética , Pseudomonas/aislamiento & purificación , Pseudomonas/metabolismo
10.
PLoS One ; 11(4): e0153584, 2016.
Artículo en Inglés | MEDLINE | ID: mdl-27082647

RESUMEN

The objective of this study was to evaluate the effects of supplementation of phytoecdysteroids (PEDS) extracted from Cyanotis arachnoidea on rumen fermentation, enzymes activity and microbial efficiency in a dual flow continuous-culture system. A single-factor experimental design was used with twelve fermenters in 4 groups with 3 replicates each. Fermenters were incubated for a total of 7 days that included first 4 days for adaptation and last 3 days for sampling. PEDS was added at levels of zero (as control), 5, 10, and 15 mg/g of the substrate (DM). The results showed that increasing supplementation levels of PEDS resulted in incremental digestibility of dry matter (DMD) (quadratic, P = 0.001) and organic matter (OMD) (quadratic, P = 0.031), but unchanged digestibility of neutral detergent fiber (NDFD), crude protein (CPD) and acid detergent acid (ADFD). As supplementation levels of PEDS increased, there were decreased response in the concentration of ammonia nitrogen (NH3-N) (linear, P = 0.015) and increased response in molar proportions of butyrate (linear, P = 0.004), but unchanged response in total volatile fatty acid (TVFA) and the molar proportion of acetate and propionate, respectively. Increasing PEDS supplementation levels decreased the ratio of acetate to propionate (linear, P = 0.038), suggesting an alteration of rumen fermentation pattern occurring due to PEDS supplementation in the diet. Supplementation of PEDS significantly increased activities of glutamate dehydrogenase (quadratic, P = 0.001), alanine dehydrogenase (quadratic, P = 0.004), glutamate synthase (linear, P = 0.038), glutamine synthetase (quadratic, P = 0.011), respectively. There were no discernible differences in the activity of carboxymethyl cellulose (CMCase), xylanase and protease regardless of the treatments. The daily production of microbial nitrogen (linear, P = 0.002) and microbial efficiency (MOEEF) (linear, P = 0.001) increased linearly as supplementation levels of PEDS increased. The decreased response of fluid NH3-N and the increased response of MN indicated that PEDS positively increased the synthesis of microbial proteins.


Asunto(s)
Bacterias/metabolismo , Commelinaceae/química , Técnicas de Cultivo/métodos , Ecdisteroides/farmacología , Enzimas/metabolismo , Fermentación/efectos de los fármacos , Rumen/metabolismo , Alimentación Animal , Fenómenos Fisiológicos Nutricionales de los Animales/efectos de los fármacos , Animales , Bacterias/citología , Bacterias/efectos de los fármacos , Reactores Biológicos/microbiología , Bovinos , Ecdisteroides/aislamiento & purificación , Microbioma Gastrointestinal/efectos de los fármacos , Microbioma Gastrointestinal/fisiología , Fitosteroles/aislamiento & purificación , Fitosteroles/farmacología , Extractos Vegetales/química , Extractos Vegetales/farmacología , Rumen/efectos de los fármacos , Rumen/microbiología
11.
Biochemistry (Mosc) ; 81(13): 1579-1588, 2016 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-28260485

RESUMEN

The ribosome as a complex molecular machine undergoes significant conformational changes while synthesizing a protein molecule. Molecular dynamics simulations have been used as complementary approaches to X-ray crystallography and cryoelectron microscopy, as well as biochemical methods, to answer many questions that modern structural methods leave unsolved. In this review, we demonstrate that all-atom modeling of ribosome molecular dynamics is particularly useful in describing the process of tRNA translocation, atomic details of behavior of nascent peptides, antibiotics, and other small molecules in the ribosomal tunnel, and the putative mechanism of allosteric signal transmission to functional sites of the ribosome.


Asunto(s)
Simulación de Dinámica Molecular , Biosíntesis de Proteínas , ARN de Transferencia Aminoácido-Específico/metabolismo , Ribosomas/química , Ribosomas/fisiología , Aminoácidos/metabolismo , Antibacterianos/metabolismo , Bacterias/química , Bacterias/citología , Células Eucariotas/química , Células Eucariotas/fisiología
12.
Drug Chem Toxicol ; 38(2): 152-61, 2015 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-24896217

RESUMEN

Metallic nanoparticles (NPs) have a variety of applications in different industries including pharmaceutical industry where these NPs are used mainly for image analysis and drug delivery. The increasing interest in nanotechnology is largely associated with undefined risks to the human health and to the environment. Therefore, in the present study cytotoxic and genotoxic effects of iron oxide, aluminium oxide and copper nanoparticles were evaluated using most commonly used assays i.e. Ames assay, in vitro cytotoxicity assay, micronucleus assay and comet assay. Cytotoxicity to bacterial cells was assessed in terms of colony forming units by using Escherichia coli (gram negative) and Bacillus subtilis (gram positive). Ames assay was carried out using two bacterial strains of Salmonella typhimurium TA98 and TA100. Genotoxicity of these NPs was evaluated following exposure to monkey kidney cell line, CHS-20. No cytotoxic and genotoxic effects were observed for iron oxide, and aluminium oxide NPs. Copper NPs were found mutagenic in TA98 and in TA100 and also found cytotoxic in dose dependent manner. Copper NPs induced significant (p < 0.01) increase in number of binucleated cells with micronuclei (96.6 ± 5.40) at the highest concentration (25 µg/mL). Copper NPs also induced DNA strand breaks at 10 µg/mL and oxidative DNA damage at 5 and 10 µg/mL. We consider these findings very useful in evaluating the genotoxic potential of NPs especially because of their increasing applications in human health and environment with limited knowledge of their toxicity and genotoxicity.


Asunto(s)
Óxido de Aluminio/toxicidad , Cobre/toxicidad , Compuestos Férricos/toxicidad , Nanopartículas del Metal/toxicidad , Óxido de Aluminio/administración & dosificación , Animales , Bacterias/citología , Bacterias/efectos de los fármacos , Línea Celular , Recuento de Colonia Microbiana , Ensayo Cometa , Cobre/administración & dosificación , Roturas del ADN/efectos de los fármacos , Daño del ADN/efectos de los fármacos , Relación Dosis-Respuesta a Droga , Compuestos Férricos/administración & dosificación , Haplorrinos , Riñón/citología , Riñón/efectos de los fármacos , Nanopartículas del Metal/administración & dosificación , Pruebas de Micronúcleos , Pruebas de Mutagenicidad
13.
Environ Sci Technol ; 48(13): 7536-43, 2014 Jul 01.
Artículo en Inglés | MEDLINE | ID: mdl-24901501

RESUMEN

Interspecies electron transfer mechanisms between Bacteria and Archaea play a pivotal role during methanogenic degradation of organic matter in natural and engineered anaerobic ecosystems. Growing evidence suggests that in syntrophic communities electron transfer does not rely exclusively on the exchange of diffusible molecules and energy carriers such as hydrogen or formate, rather microorganisms have the capability to exchange metabolic electrons in a more direct manner. Here, we show that supplementation of micrometer-size magnetite (Fe3O4) particles to a methanogenic sludge enhanced (up to 33%) the methane production rate from propionate, a key intermediate in the anaerobic digestion of organic matter and a model substrate to study energy-limited syntrophic communities. The stimulatory effect most probably resulted from the establishment of a direct interspecies electron transfer (DIET), based on magnetite particles serving as electron conduits between propionate-oxidizing acetogens and carbon dioxide-reducing methanogens. Theoretical calculations revealed that DIET allows electrons to be transferred among syntrophic partners at rates which are substantially higher than those attainable via interspecies H2 transfer. Besides the remarkable potential for improving anaerobic digestion, which is a proven biological strategy for renewable energy production, the herein described conduction-based DIET could also have a role in natural methane emissions from magnetite-rich soils and sediments.


Asunto(s)
Óxido Ferrosoférrico/farmacología , Metano/metabolismo , Propionatos/metabolismo , Acetatos/metabolismo , Archaea/citología , Archaea/efectos de los fármacos , Archaea/metabolismo , Bacterias/citología , Bacterias/efectos de los fármacos , Bacterias/metabolismo , Biodegradación Ambiental/efectos de los fármacos , Butiratos/metabolismo , Difusión , Transporte de Electrón/efectos de los fármacos , Hidrógeno/química , Hibridación Fluorescente in Situ , Cinética , Presión Parcial , Factores de Tiempo
14.
PLoS One ; 9(6): e100383, 2014.
Artículo en Inglés | MEDLINE | ID: mdl-24950228

RESUMEN

BACKGROUND: Radionuclide- and heavy metal-contaminated subsurface sediments remain a legacy of Cold War nuclear weapons research and recent nuclear power plant failures. Within such contaminated sediments, remediation activities are necessary to mitigate groundwater contamination. A promising approach makes use of extant microbial communities capable of hydrolyzing organophosphate substrates to promote mineralization of soluble contaminants within deep subsurface environments. METHODOLOGY/PRINCIPAL FINDINGS: Uranium-contaminated sediments from the U.S. Department of Energy Oak Ridge Field Research Center (ORFRC) Area 2 site were used in slurry experiments to identify microbial communities involved in hydrolysis of 10 mM organophosphate amendments [i.e., glycerol-2-phosphate (G2P) or glycerol-3-phosphate (G3P)] in synthetic groundwater at pH 5.5 and pH 6.8. Following 36 day (G2P) and 20 day (G3P) amended treatments, maximum phosphate (PO4(3-)) concentrations of 4.8 mM and 8.9 mM were measured, respectively. Use of the PhyloChip 16S rRNA microarray identified 2,120 archaeal and bacterial taxa representing 46 phyla, 66 classes, 110 orders, and 186 families among all treatments. Measures of archaeal and bacterial richness were lowest under G2P (pH 5.5) treatments and greatest with G3P (pH 6.8) treatments. Members of the phyla Crenarchaeota, Euryarchaeota, Bacteroidetes, and Proteobacteria demonstrated the greatest enrichment in response to organophosphate amendments and the OTUs that increased in relative abundance by 2-fold or greater accounted for 9%-50% and 3%-17% of total detected Archaea and Bacteria, respectively. CONCLUSIONS/SIGNIFICANCE: This work provided a characterization of the distinct ORFRC subsurface microbial communities that contributed to increased concentrations of extracellular phosphate via hydrolysis of organophosphate substrate amendments. Within subsurface environments that are not ideal for reductive precipitation of uranium, strategies that harness microbial phosphate metabolism to promote uranium phosphate precipitation could offer an alternative approach for in situ sequestration.


Asunto(s)
Archaea/metabolismo , Bacterias/metabolismo , Sedimentos Geológicos/química , Organofosfatos/química , Organofosfatos/metabolismo , Uranio/química , Uranio/metabolismo , Archaea/citología , Bacterias/citología , Biodegradación Ambiental , Hidrólisis , Solubilidad , Contaminantes Químicos del Agua/química , Contaminantes Químicos del Agua/metabolismo
15.
Appl Biochem Biotechnol ; 172(1): 62-72, 2014 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-24046256

RESUMEN

In this study, complicated model sulfur compounds in bunker oil and de-asphalted bunker oil were biodesulfurized in a batch process by microbial consortium enriched from oil sludge. Dibenzothiophene (DBT) and benzo[b]naphtho[1,2-d]thiophene (BNT1) were selected as model sulfur compounds. The results show that the mixed culture was able to grow by utilizing DBT and BNT1 as the sole sulfur source, while the cell density was higher using DBT than BNT1 as the sulfur source. GC-MS analysis of their desulfurized metabolites indicates that both DBT and BNT1 could be desulfurized through the sulfur-specific degradation pathway with the selective cleavage of carbon-sulfur bonds. When DBT and BNT1 coexisted, the biodesulfurization efficiency of BNT1 decreased significantly as the DBT concentrations increased (>0.1 mmol/L). BNT1 desulfurization efficiency also decreased along with the increase of 2-hydroxybiphenyl as the end product of DBT desulfurization. For real bunker oil, only 2.8 % of sulfur was removed without de-asphalting after 7 days of biotreatment. After de-asphalting, the biodesulfurization efficiency was significantly improved (26.2-36.5 %), which is mainly attributed to fully mixing of the oil and water due to the decreased viscosity of bunker oil.


Asunto(s)
Bacterias/crecimiento & desarrollo , Bacterias/metabolismo , Hidrocarburos/química , Petróleo/microbiología , Tiofenos/metabolismo , Bacterias/citología , Bacterias/efectos de los fármacos , Biocatálisis , Proliferación Celular/efectos de los fármacos , Técnicas de Cocultivo , Aguas del Alcantarillado/microbiología , Tiofenos/farmacología
16.
Chemosphere ; 104: 141-8, 2014 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-24280055

RESUMEN

Rapidly developing industry raises concerns about the environmental impacts of nanoparticles, but the effects of inorganic nanoparticles on functional bacterial community in wastewater treatment remain unclear. The discriminated effects of silver nanoparticles (Ag-NP) and zinc oxide nanoparticles (ZnO-NP) in a simulated sequencing batch reactor (SBR) system were therefore evaluated by the RNA-based terminal restricted fragment length polymorphism (T-RFLP), 16S rcDNA gene clone library and real-time reverse transcription-PCR (RT-PCR) analyses. Although the COD and NH4-N removal efficiencies were not or slightly reduced by the addition of ZnO-NP and Ag-NP, the functional bacterial community changed remarkably. The denitrification related species were inhibited by high dosage of ZnO-NP and Ag-NP, including Diaphorobacter species, Thauera species and those in the Sphaerotilus-Leptothrix group. However, the bacteria related to sludge bulking, heavy metal resistant and biosorption were increased, especially by ZnO-NPs treatment, including those closely related to Haliscomenobacter hydrossis, Zoogloea ramigera and Methyloversatilis universalis. In addition, Ag-NP and ZnO-NP treatments influenced the functional bacterial community differently. Increasing of bulking related bacteria may help to compensate the COD removal efficiency and to maintain functional redundancy, but could lead to operation failure of activated sludge system when expose to ZnO-NPs.


Asunto(s)
Bacterias/efectos de los fármacos , Nanopartículas/metabolismo , Aguas del Alcantarillado/microbiología , Plata/metabolismo , Óxido de Zinc/metabolismo , Bacterias/citología , Bacterias/genética , Datos de Secuencia Molecular , Polimorfismo de Longitud del Fragmento de Restricción/efectos de los fármacos
17.
Methods Mol Biol ; 1051: 365-74, 2013.
Artículo en Inglés | MEDLINE | ID: mdl-23934817

RESUMEN

Microbial whole cells are efficient, ecological, and low-cost catalysts that have been successfully applied in the pharmaceutical, environmental, and alimentary industries, among others. Microorganism immobilization is a good way to carry out the bioprocess under preparative conditions. The main advantages of this methodology lie in their high operational stability, easy upstream separation and bioprocess scale-up feasibility. Cell entrapment is the most widely used technique for whole cell immobilization. This technique-in which the cells are included within a rigid network-is porous enough to allow the diffusion of substrates and products, protects the selected microorganism from the reaction medium, and has high immobilization efficiency (100 % in most cases).


Asunto(s)
Reactores Biológicos , Resinas Acrílicas/química , Agar/química , Alginatos/química , Bacterias/citología , Biocatálisis , Células Inmovilizadas/química , Quitosano/química , Geles/química , Ácido Glucurónico/química , Ácidos Hexurónicos/química , Aceites de Plantas/química , Polimerizacion , Sefarosa/química , Aceite de Girasol
18.
Anal Chem ; 85(7): 3508-14, 2013 Apr 02.
Artículo en Inglés | MEDLINE | ID: mdl-23461528

RESUMEN

The discovery of small molecule ligands targeted to the surface of live pathogenic bacteria would enable an entirely new class of antibiotics. We report the development and validation of a microarray-based high-throughput screening platform for bacteria that exploits 300 µm diameter chemical spots in a 1 in. × 3 in. nanolayered glass slide format. Using 24 model compounds and 4 different bacterial strains, we optimized the screening technology, including fluorophore-based optical deconvolution for automated scoring of affinity and cyan-magenta-yellow-key (CMYK) color-coding for scoring of both affinity and specificity. The latter provides a lossless, one-dimensional view of multidimensional data. By linking in silico analysis with cell binding affinity and specificity, we could also begin to identify the physicochemical factors that affect ligand performance. The technology we describe could form the foundation for developing new classes of antibiotics.


Asunto(s)
Antibacterianos/química , Antibacterianos/farmacología , Bacterias/efectos de los fármacos , Evaluación Preclínica de Medicamentos/métodos , Ensayos Analíticos de Alto Rendimiento/métodos , Bibliotecas de Moléculas Pequeñas/química , Bibliotecas de Moléculas Pequeñas/farmacología , Bacterias/citología , Infecciones Bacterianas/tratamiento farmacológico , Simulación por Computador , Humanos , Ligandos , Modelos Moleculares
19.
N Biotechnol ; 30(1): 15-22, 2012 Nov 15.
Artículo en Inglés | MEDLINE | ID: mdl-22728721

RESUMEN

During the second half of the last century a large amount of substances toxic for higher organisms was released to the environment. Physicochemical methods of pollutant removal are difficult and prohibitively expensive. Using biological systems such as microorganisms, plants, or consortia microorganisms-plants is easier, cheaper, and more environmentally friendly. The aim of this study was to isolate, characterize and identify microorganisms from contaminated soil and to find out the effect of plants on microbial diversity in the environment. Microorganisms were isolated by two approaches with the aim to find all cultivable species and those able to utilise biphenyl as a sole source of carbon and energy. The first approach was direct extraction and the second was isolation of bacteria after enrichment cultivation with biphenyl. Isolates were biochemically characterized by NEFERMtest 24 and then the composition of ribosomal proteins in bacterial cells was determined by MALDI-TOF mass spectrometry. Ribosomal proteins can be used as phylogenetic markers and thus MALDI-TOF MS can be exploited also for taxonomic identification because the constitution of ribosomal proteins in bacterial cells is specific for each bacterial species. Identification of microorganisms using this method is performed with the help of database Bruker Daltonics MALDI BioTyper. Isolated bacteria were analyzed from the point of the bphA gene presence. Bacteria with detected bphA gene were then taxonomically identified by 16S rRNA sequence. The ability of two different plant species, tobacco (Nicotiana tabacum) and nightshade (Solanum nigrum), to accumulate PCBs was studied as well. It was determined that various plant species differ in the PCBs accumulation from the contaminated soil. Also the content of PCBs in various plant tissues was compared. PCBs were detected in roots and aboveground biomass including leaves and berries.


Asunto(s)
Bacterias/metabolismo , Interacciones Microbianas , Nicotiana/metabolismo , Bifenilos Policlorados/metabolismo , Contaminantes del Suelo/metabolismo , Solanum/metabolismo , Bacterias/citología , Bacterias/genética , Bacterias/aislamiento & purificación , Biodegradación Ambiental , Genes Bacterianos/genética , ARN Ribosómico 16S/genética , Proteínas Ribosómicas/metabolismo , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción
20.
ACS Nano ; 5(8): 6279-96, 2011 Aug 23.
Artículo en Inglés | MEDLINE | ID: mdl-21732678

RESUMEN

Chains of magnetosomes extracted from AMB-1 magnetotactic bacteria are shown to be highly efficient for cancer therapy when they are exposed to an alternative magnetic field. When a suspension containing MDA-MB-231 breast cancer cells was incubated in the presence of various amounts of extracted chains of magnetosomes, the viability of these cells remained high in the absence of an alternative magnetic field. By contrast, when this suspension was exposed to an alternative magnetic field of frequency 183 kHz and field strengths of 20, 40, or 60 mT, up to 100% of these cells were destroyed. The antitumoral activity of the extracted chains of magnetosomes is demonstrated further by showing that they can be used to fully eradicate a tumor xenografted under the skin of a mouse. For that, a suspension containing ∼1 mg of extracted chains of magnetosomes was administered within the tumor and the mouse was exposed to three heat cycles of 20 min, during which the tumor temperature was raised to ∼43 °C. We also demonstrate the higher efficiency of the extracted chains of magnetosomes compared with various other materials, i.e., whole inactive magnetotactic bacteria, individual magnetosomes not organized in chains, and two different types of chemically synthesized superparamagnetic iron oxide nanoparticles currently tested for alternative magnetic field cancer therapy. The higher efficiency of the extracted chains of magnetosomes compared with that of the other nanoparticles is attributed to three factors: (i) a specific absorption rate higher for the magnetosomes than for the chemically synthesized superparamagnetic iron oxide nanoparticles, (ii) a more uniform heating for the chains of magnetosomes than for the individual magnetosomes and (iii) the ability of the chains of magnetosomes to penetrate within the cancer cells or bind at the cell membrane following the application of the alternative magnetic field, which enables efficient cell destruction. Biodistribution studies revealed that extracted chains of magnetosomes administered directly within xenografted breast tumors progressively left the tumors during the 14 days following their administration and were then eliminated in large proportion in the feces.


Asunto(s)
Bacterias/citología , Neoplasias de la Mama/terapia , Magnetoterapia/métodos , Magnetosomas , Animales , Neoplasias de la Mama/patología , Línea Celular Tumoral , Ácido Cítrico/química , Ácido Edético/química , Femenino , Calor , Humanos , Magnetosomas/química , Ratones , Nanopartículas/química , Nanopartículas/uso terapéutico , Polietilenglicoles/química , Dodecil Sulfato de Sodio/farmacología , Factores de Tiempo
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