Integrated metabolomics and transcriptome analysis on flavonoid biosynthesis in safflower (Carthamus tinctorius L.) under MeJA treatment.

BACKGROUND: Safflower (Carthamus tinctorius L.) is an important cash crop, of which the dried tube flower is not only an important raw material for dyes and cosmetics but also an important herb widely used in traditional Chinese medicine. The pigment and bioactive compounds are composed of flavonoids (mainly quinone chalcones), and studies have reported that MeJA can promote the biosynthesis of quinone chalcones, but the mechanism underlying the effect of MeJA in safflower remains unclear. Here, we attempt to use metabolomics and transcriptome technologies to analyse the molecular mechanism of flavonoid biosynthesis under MeJA treatment in safflower. RESULTS: Based on a UHPLC-ESI-MS/MS detection platform and a self-built database (including hydroxysafflor yellow A, HSYA), a total of 209 flavonoid metabolites were detected, and 35 metabolites were significantly different after treatment with MeJA. Among them, 24 metabolites were upregulated upon MeJA treatment, especially HSYA. Eleven metabolites were downregulated after MeJA treatment. Integrated metabolomics and transcriptome analysis showed that MeJA might upregulate the expression of upstream genes in the flavonoid biosynthesis pathway (such as CHSs, CHIs and HCTs) and downregulate the expression of downstream genes (such as F3Ms, ANRs and ANSs), thus promoting the biosynthesis of quinone chalcones, such as HSYA. The transcription expressions of these genes were validated by real-time PCR. In addition, the promoters of two genes (CtCHI and CtHCT) that were significantly upregulated under MeJA treatment were cloned and analysed. 7 and 3 MeJA response elements were found in the promoters, respectively. CONCLUSIONS: MeJA might upregulate the expression of the upstream genes in the flavonoid biosynthesis pathway and downregulate the expression of the downstream genes, thus promoting the biosynthesis of quinone chalcones. Our results provide insights and basic data for the molecular mechanism analysis of flavonoid synthesis in safflower under MeJA treatment.

Safflower (Carthamus tinctorius) Biochemical Properties, Yield, and Oil Content Affected by 24-Epibrassinosteroid and Genotype under Drought Stress.

The steroid hormones, including brassinosteroids, regulate plant growth under stress. It is hypothesized that 24-epibrassinosteroids (24-EBR) can affect safflower (Carthamus tinctorius) biochemical properties, crop yield, and oil content under drought stress. The objective of our study was to determine the response of three safflower genotypes (Goldasht, Faraman, and Sina) to exogenous 24-EBR (0 and 10-7 M) under drought stress, including 85, 65, and 45% of field capacity in 2015. Stress decreased chlorophyll-a, chlorophyll-b, total chlorophyll, carotenoid, relative water content (RWC), seed yield, and oil percentage. The activities of superoxide dismutase (SOD), catalase (CAT), polyphenol oxidase (PPO), and proline contents increased in response to either drought stress or 24-EBR. Genotypes behaved significantly different under stress. 24-EBR significantly increased plant chlorophyll contents and oil percentage, and it significantly reduced the malondialdehyde (MDA) content via increasing the proline and carotenoid contents under stress. 24-EBR can increase safflower oil and seed yield under drought stress.

Full-length transcriptome sequences and the identification of putative genes for flavonoid biosynthesis in safflower.

BACKGROUND: The flower of the safflower (Carthamus tinctorius L.) has been widely used in traditional Chinese medicine for the ability to improve cerebral blood flow. Flavonoids are the primary bioactive components in safflower, and their biosynthesis has attracted widespread interest. Previous studies mostly used second-generation sequencing platforms to survey the putative flavonoid biosynthesis genes. For a better understanding of transcription data and the putative genes involved in flavonoid biosynthesis in safflower, we carry our study. RESULTS: High-quality RNA was extracted from six types of safflower tissue. The RNAs of different tissues were mixed equally and used for multiple size-fractionated libraries (1-2, 2-3 and 3-6 k) library construction. Five cells were carried (2 cells for 1-2 and for 2-3 k libraries and 1 cell for 3-6 k libraries). 10.43Gb clean data and 38,302 de-redundant sequences were captured. 44 unique isoforms were annotated as encoding enzymes involved in flavonoid biosynthesis. The full length flavonoid genes were characterized and their evolutional relationship and expressional pattern were analyzed. They can be divided into eight families, with a large differences in the tissue expression. The temporal expressions under MeJA treatment were also measured, 9 genes are significantly up-regulated and 2 genes are significantly down-regulated. The genes involved in flavonoid synthesis in safflower were predicted in our study. Besides, the SSR and lncRNA are also analyzed in our study. CONCLUSIONS: Full-length transcriptome sequences were used in our study. The genes involved in flavonoid synthesis in safflower were predicted in our study. Combined the determination of flavonoids, CtC4H2, CtCHS3, CtCHI3, CtF3H3, CtF3H1 are mainly participated in MeJA promoting the synthesis of flavonoids. Our results also provide a valuable resource for further study on safflower.

Isolation and characterization of isochorismate synthase and cinnamate 4-hydroxylase during salinity stress, wounding, and salicylic acid treatment in Carthamus tinctorius.

Salicylic acid (SA) is a prominent signaling molecule during biotic and abiotic stresses in plants biosynthesized via cinnamate and isochorismate pathways. Cinnamate 4-hydroxylase (C4H) and isochorismate synthase (ICS) are the main enzymes in phenylpropanoid and isochorismate pathways, respectively. To investigate the actual roles of these genes in resistance mechanism to environmental stresses, here, the coding sequences of these enzymes in safflower (Carthamus tinctorius), as an oilseed industrial medicinal plant, were partially isolated and their expression profiles during salinity stress, wounding, and salicylic acid treatment were monitored. As a result, safflower ICS (CtICS) and C4H (CtC4H) were induced in early time points after wounding (3-6 h). Upon salinity stress, CtICS and CtC4H were highly expressed for the periods of 6-24 h and 3-6 h after treatment, respectively. It seems evident that ICS expression level is SA concentration dependent as if safflower treatment with 1 mM SA could induce ICS much stronger than that with 0.1 mM, while C4H is less likely to be so. Based on phylogenetic analysis, safflower ICS has maximum similarity to its ortholog in Vitis vinifera up to 69%, while C4H shows the highest similarity to its ortholog in Echinacea angustifolia up to 96%. Overall, the isolated genes of CtICS and CtC4H in safflower could be considered in plant breeding programs for salinity tolerance as well as for pathogen resistance.

EMS-induced cytomictic variability in safflower (Carthamus tinctorius L.).

Seeds of safflower (Carthamus tinctorius L.) were subjected to three treatment durations (3h, 5h and 7h) of 0.5 % Ethyl Methane Sulphonate (EMS). Microsporogenesis was carried out in the control as well as in the treated materials. EMS treated plants showed interesting feature of partial inter-meiocyte chromatin migration through channel formation, beak formation or direct cell fusion. Another interesting feature noticed during the study was the fusion among tetrads due to wall dissolution. The phenomenon of cytomixis was recorded at nearly all the stages of microsporogenesis connecting from a few to several meiocytes. Other abnormalities such as laggards, precocious movement, bridge and non-disjunction of chromosomes were also recorded but in very low frequencies. The phenomenon of cytomixis increased along with the increase in treatment duration of EMS. Cells with these types of cytomictic disturbances may probably result in uneven formation of gametes or zygote, heterogenous sized pollen grains or even loss of fertility in future.

The effect of water deficit on yield and yield components of safflower (Carthamus tinctorius L.).

The aim of this study carried out in Shahid Chamran Ahwaz, University, in 2001-2002 to determine the effect of different forms of irrigation on the safflower (Carthamus tinctorius L.) yield and yield components. Information was needed on application time of irrigation water on cultivars of safflower (Carthamus tinctorius L.). Increasing competition for water supplies and rising costs of applying water make efficient irrigation important. Yield and water use of safflower were evaluated on silt loam soil. Deficit irrigation treatments; I1: normal irrigation, I2: cutoff irrigation in budding period, I3: cutoff irrigation in flowering period (blooming), I4: cutoff irrigation in maturity period, were examined in Randomized Complete Block Design (RCB) with three replications. In this field experiment irrigation regimes were the main plots and cvs (ARAK 28, ESFAHAN LOCALITY and FO2 cvs) were as sub plots. The plant height, the plant head number, the 1000 seed weight, and the seed yield were measured in this experiment. The different irrigation regimes had a significant effects (p < 0.05) on the seed, the crude oil yields (kg ha(-1)), seed number per boll, harvest index, total dry weight. The highest seed yield (2679 kg seed ha(-1) in cv. ESFAHAN Lo.) and the crude oil yield (855 kg oil ha(-1) in cv. ARAK) were obtained from the I1 irrigation regime. I3 gave the lowest seed yield (1499 kg seed ha(-1) in cv. FO2) and the crude oil yield (449 kg oil ha(-1) in cv. FO2). I1 gave the highest oil percentage (35% in ARAK cv.) and the lowest (27.4% in FO2 cv.) obtained in I4. The different between cvs were significant in number of boll per plant, number of seed per boll, the 1000 seed, high, number of branch per plant, seed yield (kg ha(-1)), crude oil yield and total dry weight.