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1.
J Am Soc Mass Spectrom ; 32(1): 73-83, 2021 Jan 06.
Artículo en Inglés | MEDLINE | ID: mdl-32401029

RESUMEN

Covalent modifications by reactive oxygen species can modulate the function and stability of proteins. Thermal unfolding experiments in solution are a standard tool for probing oxidation-induced stability changes. Complementary to such solution investigations, the stability of electrosprayed protein ions can be assessed in the gas phase by collision-induced unfolding (CIU) and ion-mobility spectrometry. A question that remains to be explored is whether oxidation-induced stability alterations in solution are mirrored by the CIU behavior of gaseous protein ions. Here, we address this question using chloramine-T-oxidized cytochrome c (CT-cyt c) as a model system. CT-cyt c comprises various proteoforms that have undergone MetO formation (+16 Da) and Lys carbonylation (LysCH2-NH2 → LysCHO, -1 Da). We found that CT-cyt c in solution was destabilized, with a ∼5 °C reduced melting temperature compared to unmodified controls. Surprisingly, CIU experiments revealed the opposite trend, i.e., a stabilization of CT-cyt c in the gas phase. To pinpoint the source of this effect, we performed proteoform-resolved CIU on CT-cyt c fractions that had been separated by cation exchange chromatography. In this way, it was possible to identify MetO formation at residue 80 as the key modification responsible for stabilization in the gas phase. Possibly, this effect is caused by newly formed contacts of the sulfoxide with aromatic residues in the protein core. Overall, our results demonstrate that oxidative modifications can affect protein stability in solution and in the gas phase very differently.


Asunto(s)
Citocromos c/química , Lisina/química , Cloraminas/química , Gases/química , Espectrometría de Movilidad Iónica , Oxidación-Reducción , Estabilidad Proteica , Desplegamiento Proteico , Soluciones/química , Espectrometría de Masa por Ionización de Electrospray , Termodinámica , Compuestos de Tosilo/química
2.
Food Chem ; 343: 128552, 2021 May 01.
Artículo en Inglés | MEDLINE | ID: mdl-33189476

RESUMEN

The objective of this study was to evaluate the effects of arginine (ARG) and/or lysine (LYS) supplementation on meat quality and oxidative stability of beef loins. Steers (n = 40) were split among four dietary treatments (control, ARG, LYS or ARGLYS). The loins (longissimus lumborum) were obtained at 1 day postmortem and aged either 14 or 28 days prior to cutting of steaks for 7 days of display. No impacts of diet treatments on instrumental tenderness, water-holding capacity and fatty acid profiles were found (P > 0.05). Extended aging significantly decreased lipid oxidative stability, color stability and reducing ability of loins. However, steaks from ARG and ARGLYS maintained superior color stability coupled with lower mitochondrial membrane permeability and higher cytochrome c redox stability compared to control (P < 0.05). These results indicate that ARG supplementation can improve color stability of beef loins possibly through delayed onset of mitochondrial-mediated apoptotic processes.


Asunto(s)
Apoptosis , Arginina/administración & dosificación , Carne/análisis , Mitocondrias/metabolismo , Animales , Apoptosis/efectos de los fármacos , Arginina/farmacología , Bovinos , Color , Citocromos c/química , Citocromos c/metabolismo , Suplementos Dietéticos , Ácidos Grasos/química , Ácidos Grasos/metabolismo , Concentración de Iones de Hidrógeno , Peroxidación de Lípido/efectos de los fármacos , Músculo Esquelético/química , Músculo Esquelético/metabolismo , Permeabilidad/efectos de los fármacos
3.
J Mater Chem B ; 8(42): 9686-9696, 2020 11 04.
Artículo en Inglés | MEDLINE | ID: mdl-33030156

RESUMEN

To enhance the efficacy of nanoparticle-based cancer therapy with reduced side effects and promote its clinical translation, a biocompatible nanocomposite based on mesoporous silica-coated gold nanorods (AuNR@MSN) for triple tumor therapy is reported in this study. The gold core served as a hyperthermia agent, while the MSN shell acted as a reservoir of chemotherapeutics owing to its excellent loading capacity. Cytochrome c with the apoptosis inducing function was anchored on the surface of AuNR@MSN to prevent drug leakage through redox-responsive disulfide bonds. The successful construction of a nanocomposite was confirmed by characterization of the physicochemical properties. In vitro and in vivo studies demonstrated that the nanocomposite displayed an optimizing anti-tumor effect with a synergistic strategy of excellent photothermal therapy, chemotherapy and protein therapy. Therefore, this cooperative strategy paves the way for high-efficiency oncotherapy with reduced side effects.


Asunto(s)
Neoplasias de la Mama/terapia , Citocromos c/uso terapéutico , Oro/uso terapéutico , Nanotubos , Dióxido de Silicio/uso terapéutico , Animales , Apoptosis/efectos de los fármacos , Neoplasias de la Mama/patología , Citocromos c/química , Preparaciones de Acción Retardada/química , Sistemas de Liberación de Medicamentos , Femenino , Oro/química , Humanos , Hipertermia Inducida , Células MCF-7 , Ratones Desnudos , Nanotubos/química , Nanotubos/ultraestructura , Oxidación-Reducción , Porosidad , Dióxido de Silicio/química
4.
J Inorg Biochem ; 208: 111095, 2020 07.
Artículo en Inglés | MEDLINE | ID: mdl-32442763

RESUMEN

Proteins containing heme groups perform a variety of important functions in living organisms. The heme groups are involved in catalyzing oxidation/reduction reactions, in electron transfer, and in binding small molecules, like oxygen or nitric oxide. Flavonoids, low molecular weight plant polyphenols, are ubiquitous components of human diet. They are also components of many plant extracts used in herbal medicine as well as of food supplements. Due to their relatively low reduction potential, flavonoids are prone to oxidation. This paper provides a review of redox reactions of various heme proteins, including catalase, some peroxidases, cytochrome P450, cytochrome c, myoglobin, and hemoglobin with flavonoids. Potential biological significance of these reactions is discussed, in particular when flavonoids are delivered to the body at pharmacological doses.


Asunto(s)
Catalasa/química , Sistema Enzimático del Citocromo P-450/química , Citocromos c/química , Flavonoides/química , Hemoglobinas/química , Mioglobina/química , Animales , Humanos , Oxidación-Reducción
5.
Chemistry ; 26(26): 5903-5910, 2020 May 07.
Artículo en Inglés | MEDLINE | ID: mdl-32142179

RESUMEN

First-in-class CuII and AuIII metaled phosphorus dendrons were synthesized and showed significant antiproliferative activity against several aggressive breast cancer cell lines. The data suggest that the cytotoxicity increases with reducing length of the alkyl chains, whereas the replacement of CuII with AuIII considerably increases the antiproliferative activity of metaled phosphorus dendrons. Very interestingly, we found that the cell death pathway is related to the nature of the metal complexed by the plain dendrons. CuII metaled dendrons showed a potent caspase-independent cell death pathway, whereas AuIII metaled dendrons displayed a caspase-dependent apoptotic pathway. The complexation of plain dendrons with AuIII increased the cellular lethality versus dendrons with CuII and promoted the translocation of Bax into the mitochondria and the release of Cytochrome C (Cyto C).


Asunto(s)
Citocromos c/metabolismo , Dendrímeros/metabolismo , Metales/química , Mitocondrias/química , Fósforo/química , Apoptosis , Muerte Celular , Citocromos c/química , Dendrímeros/química , Humanos , Células MCF-7 , Metales/metabolismo , Mitocondrias/metabolismo , Estructura Molecular , Fósforo/metabolismo
6.
Anal Chem ; 91(2): 1408-1415, 2019 01 15.
Artículo en Inglés | MEDLINE | ID: mdl-30457829

RESUMEN

Cytochrome c (Cyt c) release and cellular pH change are two important mediators of apoptosis. Effective methods to regulate or monitor such two events are therefore highly desired for apoptosis research and cancer cell therapy. Herein, we exploited electrostimulation to regulate cellular Cyt c release and apoptosis process, and by designing and preparing a smart and efficient plasmonic nanorobot (with surface-modified Cyt c-specific aptamer and 4-mercaptobenzoic acid) that is capable of Cyt c capture and self-sensing, we achieved real-time SERS monitoring of dynamic Cyt c release and simultaneous cell acidification in apoptosis during electrostimulation. Distinctly different molecular stress responses in the two events for cancerous MCF-7 and HeLa cells and normal L929 cells were identified and revealed. The method and results are valuable and promising for apoptosis and Cyt c-mediated biology studies.


Asunto(s)
Apoptosis , Citocromos c/metabolismo , Estimulación Eléctrica , Nanotecnología/métodos , Robótica , Animales , Aptámeros de Nucleótidos/genética , Aptámeros de Nucleótidos/metabolismo , Secuencia de Bases , Benzoatos/química , Línea Celular , Citocromos c/química , Humanos , Concentración de Iones de Hidrógeno , Potencial de la Membrana Mitocondrial , Compuestos de Sulfhidrilo/química
7.
J Am Soc Mass Spectrom ; 29(12): 2297-2304, 2018 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-30238192

RESUMEN

In electrospray, excess charges are supplied to a sample solution by the occurrence of electrochemical reactions. Recently, different versions of electrospray, e.g., dielectric barrier electrospray ionization, inductive desorption electrospray ionization, and electrostatic-ionization driven by dielectric polarization, have been reported in which the sample solution was not in direct contact with the metal electrode but separated by dielectric materials. The objective of the current work is to elucidate the mechanism of dielectric barrier electrospray. A sealed borosilicate glass capillary inserted with a fine acupuncture needle was used as a probe. A sample solution (~ 400 nL) was captured on the glass capillary tip and a positive high voltage (HV) pulse (+ 4.5 kV) was applied to the internal metal electrode. Mass spectra were measured as a function of the HV pulse width from µs to 10 s. Ions started to be detected with the pulse width of ~ 5 ms. The ion intensities increased slowly with time and reached a plateau in a few seconds. The charge distribution of cytochrome c [M + nH]n+ shifted to higher n values from a few ms to seconds. In addition to cone-jet mode normal electrospray that lasted until all the liquid sample was depleted from the glass tip, the polarization-induced electrospray ionization was observed at the early stage of the HV application. Graphical Abstract ᅟ.


Asunto(s)
Electrodos , Agujas , Espectrometría de Masa por Ionización de Electrospray/instrumentación , Terapia por Acupuntura/instrumentación , Citocromos c/química , Vidrio
8.
Adv Healthc Mater ; 6(20)2017 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-28945015

RESUMEN

Protein delivery into the cytosol of cells is a challenging topic in the field of nanomedicine, because cellular uptake and endosomal escape are typically inefficient, hampering clinical applications. In this contribution cuboidal mesoporous silica nanoparticles (MSNs) containing disk-shaped cavities with a large pore diameter (10 nm) are studied as a protein delivery vehicle using cytochrome-c (cytC) as a model membrane-impermeable protein. To ensure colloidal stability, the MSNs are coated with a fusogenic lipid bilayer (LB) and cellular uptake is induced by a complementary pair of coiled-coil (CC) lipopeptides. Coiled-coil induced membrane fusion leads to the efficient cytosolic delivery of cytC and triggers apoptosis of cells. Delivery of these LB coated MSNs in the presence of various endocytosis inhibitors strongly suggests that membrane fusion is the dominant mechanism of cellular uptake. This method is potentially a universal way for the efficient delivery of any type of inorganic nanoparticle or protein into cells mediated by CC induced membrane fusion.


Asunto(s)
Materiales Biocompatibles Revestidos/química , Membrana Dobles de Lípidos/química , Nanopartículas/química , Dióxido de Silicio/química , Apoptosis/efectos de los fármacos , Citocromos c/química , Citocromos c/metabolismo , Citocromos c/toxicidad , Citosol/metabolismo , Endocitosis , Células HeLa , Humanos , Lipopéptidos/química , Lipopéptidos/metabolismo , Fusión de Membrana , Microscopía Confocal , Tamaño de la Partícula , Porosidad
9.
J Physiol Biochem ; 73(2): 267-273, 2017 May.
Artículo en Inglés | MEDLINE | ID: mdl-28155123

RESUMEN

α-Tocopherol (TOC) is a widely used supplement known for its role as an antioxidant. Previously, we have shown that TOC elicits adaptive responses by upregulating the ERK/CREB/HO-1 pathway, which depends on its concentration in cultured renal proximal tubule cells (RPTCs). This suggests that high-dose TOC (hTOC) may elicit adverse effects via inflicting oxidative stress. Since the pro-oxidant p66shc is a major mediator of oxidant injury in various models of renal toxicants, we tested the hypothesis that hTOC elicits renal toxicity through activation of p66shc and consequent oxidative stress. RPTCs (NRK52E) were treated with high-dose TOC (hTOC; 400 nM) in cells where expression or mitochondrial cytochrome c-binding of p66shc was manipulated by genetic means. Intracellular production of reactive oxygen species (ROS), mitochondrial depolarization, and cell viability was also determined. Additionally, activation of the pro-survival ERK/CREB/HO-1 signaling and the p66shc promoter was determined via reporter luciferase assays. hTOC decreased cell viability via increasing ROS-dependent mitochondrial depolarization and suppressing the pro-survival ERK/CREB/HO-1 pathway via transcriptional activation of p66shc. Conversely, either knockdown of p66shc, mutation of its mitochondrial cytochrome c-binding site, or overexpression of ERK or HO-1 ameliorated adverse effects of hTOC and restored the pro-survival signaling. The pro-oxidant p66shc plays dual role in toxicity of high-dose TOC: it provokes oxidative stress and suppresses adaptive responses.


Asunto(s)
Antioxidantes/efectos adversos , Regulación de la Expresión Génica , Túbulos Renales Proximales/metabolismo , Estrés Oxidativo , Regiones Promotoras Genéticas , Proteína Transformadora 1 que Contiene Dominios de Homología 2 de Src/metabolismo , alfa-Tocoferol/efectos adversos , Sustitución de Aminoácidos , Animales , Sitios de Unión , Línea Celular , Supervivencia Celular , Citocromos c/química , Citocromos c/metabolismo , Suplementos Dietéticos/efectos adversos , Técnicas de Silenciamiento del Gen , Genes Reporteros , Túbulos Renales Proximales/citología , Sistema de Señalización de MAP Quinasas , Potencial de la Membrana Mitocondrial , Mutación , Ratas , Especies Reactivas de Oxígeno/antagonistas & inhibidores , Especies Reactivas de Oxígeno/metabolismo , Proteínas Recombinantes de Fusión/química , Proteínas Recombinantes de Fusión/metabolismo , Proteína Transformadora 1 que Contiene Dominios de Homología 2 de Src/antagonistas & inhibidores , Proteína Transformadora 1 que Contiene Dominios de Homología 2 de Src/química , Proteína Transformadora 1 que Contiene Dominios de Homología 2 de Src/genética
10.
Acc Chem Res ; 49(11): 2560-2568, 2016 11 15.
Artículo en Inglés | MEDLINE | ID: mdl-27797176

RESUMEN

Molecular spintronics (spin + electronics), which aims to exploit both the spin degree of freedom and the electron charge in molecular devices, has recently received massive attention. Our recent experiments on molecular spintronics employ chiral molecules which have the unexpected property of acting as spin filters, by way of an effect we call "chiral-induced spin selectivity" (CISS). In this Account, we discuss new types of spin-dependent electrochemistry measurements and their use to probe the spin-dependent charge transport properties of nonmagnetic chiral conductive polymers and biomolecules, such as oligopeptides, L/D cysteine, cytochrome c, bacteriorhodopsin (bR), and oligopeptide-CdSe nanoparticles (NPs) hybrid structures. Spin-dependent electrochemical measurements were carried out by employing ferromagnetic electrodes modified with chiral molecules used as the working electrode. Redox probes were used either in solution or when directly attached to the ferromagnetic electrodes. During the electrochemical measurements, the ferromagnetic electrode was magnetized either with its magnetic moment pointing "UP" or "DOWN" using a permanent magnet (H = 0.5 T), placed underneath the chemically modified ferromagnetic electrodes. The spin polarization of the current was found to be in the range of 5-30%, even in the case of small chiral molecules. Chiral films of the l- and d-cysteine tethered with a redox-active dye, toludin blue O, show spin polarizarion that depends on the chirality. Because the nickel electrodes are susceptible to corrosion, we explored the effect of coating them with a thin gold overlayer. The effect of the gold layer on the spin polarization of the electrons ejected from the electrode was investigated. In addition, the role of the structure of the protein on the spin selective transport was also studied as a function of bias voltage and the effect of protein denaturation was revealed. In addition to "dark" measurements, we also describe photoelectrochemical measurements in which light is used to affect the spin selective electron transport through the chiral molecules. We describe how the excitation of a chromophore (such as CdSe nanoparticles), which is attached to a chiral working electrode, can flip the preferred spin orientation of the photocurrent, when measured under the identical conditions. Thus, chirality-induced spin polarization, when combined with light and magnetic field effects, opens new avenues for the study of the spin transport properties of chiral molecules and biomolecules and for creating new types of spintronic devices in which light and molecular chirality provide new functions and properties.


Asunto(s)
Electrones , Bacteriorodopsinas/química , Cadmio/química , Cisteína/química , Citocromos c/química , Técnicas Electroquímicas , Electrodos , Oro/química , Fenómenos Magnéticos , Nanopartículas , Níquel/química , Oligopéptidos/química , Oxidación-Reducción , Selenio/química , Estereoisomerismo , Cloruro de Tolonio/química
11.
Molecules ; 21(8)2016 Aug 12.
Artículo en Inglés | MEDLINE | ID: mdl-27529204

RESUMEN

This study aims to evaluate the phenolic profile, and antioxidant and antimicrobial activity of Achillea schurii Sch.-Bip., an endemic species from Romania that has not been investigated yet. The chromatographic profile of the phenolic components was obtained using the HPLC-MS method, while the total polyphenol, flavonoid, caffeic acid derivative contents were quantified using spectrophotometric methods. The antioxidant activity was evaluated using different methods: DPPH radical scavenging, hemoglobin ascorbate peroxidase activity inhibition (HAPX), inhibition of lipid peroxidation catalyzed by cytochrome c, and direct detection of plant-derived free radicals using electron paramagnetic resonance (EPR). The antimicrobial test was performed using the disk diffusion assay. The phenolic profile has revealed high amounts of isoquercitrin, rutin, luteolin, and apigenin. The A. schurii extract exhibited a good antioxidant capacity, and high phenolic contents (76.93 mg/g polyphenols, 18.61 mg/g flavonoids and 41.48 mg/g caffeic acid derivatives, respectively). The antimicrobial tests reveal a remarkable inhibitory activity against Listeria monocytogenes, Staphylococcus aureus, and Salmonella typhimurium. Considering the above, A. schurii may be deemed to offer good perspectives for pharmaceutical and industrial applications.


Asunto(s)
Achillea/química , Antiinfecciosos/química , Antiinfecciosos/farmacología , Antioxidantes/química , Antioxidantes/farmacología , Flores/química , Extractos Vegetales/química , Extractos Vegetales/farmacología , Bacterias/efectos de los fármacos , Cromatografía Líquida de Alta Presión , Citocromos c/química , Radicales Libres/antagonistas & inhibidores , Hongos/efectos de los fármacos , Peroxidación de Lípido , Pruebas de Sensibilidad Microbiana , Fenoles/química , Fenoles/farmacología
12.
Anal Chem ; 88(14): 7222-9, 2016 07 19.
Artículo en Inglés | MEDLINE | ID: mdl-27320857

RESUMEN

The tremendous number of peptides identified in current bottom-up mass spectrometric workflows, although impressive for high-throughput proteomics, results in little selectivity for more targeted applications. We describe a strategy for cysteine-selective proteomics based on a tagging method that installs a S-Se bond in peptides that is cleavable upon 266 nm ultraviolet photodissociation (UVPD). The alkylating reagent, N-(phenylseleno)phthalimide (NPSP), reacts with free thiols in cysteine residues and attaches a chromogenic benzeneselenol (SePh) group. Upon irradiation of tagged peptides with 266 nm photons, the S-Se bond is selectively cleaved, releasing a benzeneselenol moiety corresponding to a neutral loss of 156 Da per cysteine. Herein we demonstrate a new MS/MS scan mode, UVPDnLossCID, which facilitates selective screening of cysteine-containing peptides. A "prescreening" event occurs by activation of the top N peptide ions by 266 nm UVPD. Peptides exhibiting a neutral loss corresponding to one or more SePh groups are reactivated and sequenced by CID. Because of the low frequency of cysteine in the proteome, unique cysteine-containing peptides may serve as surrogates for entire proteins. UVPDnLossCID does not generate as many peptide spectrum matches (PSMs) as conventional bottom-up methods; however, UVPDnLossCID provides far greater selectivity.


Asunto(s)
Cisteína/química , Péptidos/química , Selenio/química , Espectrometría de Masas en Tándem , Rayos Ultravioleta , Alquilantes/química , Secuencia de Aminoácidos , Animales , Bovinos , Cromatografía Líquida de Alta Presión , Citocromos c/química , Citocromos c/metabolismo , Fotólisis/efectos de la radiación , Ftalimidas/química , Albúmina Sérica Bovina/química , Albúmina Sérica Bovina/metabolismo , Compuestos de Sulfhidrilo/química
13.
Photomed Laser Surg ; 34(12): 631-637, 2016 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-27111566

RESUMEN

OBJECTIVE: Our primary hypothesis was that red-to-near infrared (R-NIR) irradiation would have an effect on the kinetics parameters of the reaction of cytochrome c with isolated cytochrome c oxidase (CCO), and that the magnitude and direction of these changes could be interpreted in the context of the reaction schemes proposed by other authors. New values for the milimolar extinction coefficients of cytochrome c were also determined. BACKGROUND DATA: Definitive answers to the fundamental processes involved in red-to-near infrared photobiomodulation (R-NIR-PBM) have not been obtained. The consensus is that the electron transport chain enzyme CCO is the target for R-NIR-PBM. This work was undertaken to explore the effect of R-NIR on the activity of isolated CCO. METHODS: Scans for cytochrome c were obtained in both reduced and oxidized states, and values for the extinction coefficients were calculated. Activity assays were performed by following the oxidation state of cytochrome c at 550 or 415 nm. R-NIR effects on CCO activity were evaluated by pre-irradiating the enzyme at 670 or 830 nm, or by irradiating the reaction mixture with 660 nm light. RESULTS: Milimolar extinction coefficients (L-1 cm-1) were: ɛ550red = 29.1 ± 0.4, ɛ550ox = 8.60 ± 0.15, ɛ415red = 140 ± 2, and ɛ415ox = 89.0 ± 1.1. Reduced-oxidized extinction coefficients were: δɛ550red-ox = 20.5 ± 0.2, and δɛ415red-ox = 51.0 ± 2.0. The second order rate constants k' for irradiated CCO did not show a statistically significant difference from controls. CONCLUSIONS: The oxidation of cytochrome c by isolated CCO has not been shown to be affected by R-NIR irradiation, whether applied prior to or concurrently with the enzymatic assays. This lack of effect by R-NIR calls into question the CCO activity model of R-NIR photobiomodulation.


Asunto(s)
Citocromos c/efectos de la radiación , Complejo IV de Transporte de Electrones/efectos de la radiación , Rayos Infrarrojos , Citocromos c/química , Complejo IV de Transporte de Electrones/química , Oxidación-Reducción
14.
J Sep Sci ; 39(4): 717-24, 2016 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-26608781

RESUMEN

Hydrophobins are small proteins that play a role in a number of processes during the filamentous fungi growth and development. These proteins are characterized by the self-assembly of their molecules into an amphipathic membrane at hydrophilic-hydrophobic interfaces. Isolation and purification of hydrophobins generally present a challenge in their analysis. Hydrophobin SC3 from Schizophyllum commune was selected as a representative of class I hydrophobins in this work. A novel procedure for selective and effective isolation of hydrophobin SC3 based on solid-phase extraction with polytetrafluoroethylene microparticles loaded in a small self-made microcolumn is reported. The tailored binding of hydrophobins to polytetrafluoroethylene followed by harsh elution conditions resulted in a highly specific isolation of hydrophobin SC3 from the model mixture of ten proteins. The presented isolation protocol can have a positive impact on the analysis and utilization of these proteins including all class I hydrophobins. Hydrophobin SC3 was further subjected to reduction of its highly stable disulfide bonds and to chymotryptic digestion followed by mass spectrometric analysis. The isolation and digestion protocols presented in this work make the analysis of these highly hydrophobic and compact proteins possible.


Asunto(s)
Espectrometría de Masas/métodos , Microesferas , Politetrafluoroetileno/química , Schizophyllum/química , Extracción en Fase Sólida/métodos , Albúminas/química , Ananas/química , Animales , Bromelaínas/química , Canavalia/química , Anhidrasas Carbónicas/química , Caseínas/química , Bovinos , Pollos , Quimotripsina/química , Concanavalina A/química , Citocromos c/química , Disulfuros/química , Eritrocitos/enzimología , Caballos , Humanos , Leche/enzimología , Miocardio/metabolismo , Proteómica/métodos , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción , Espectrometría de Masas en Tándem , Termolisina/química
15.
IUBMB Life ; 67(9): 694-700, 2015 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-26311433

RESUMEN

Using our previously reported maps of the electrostatic surface of horse heart ferri- and ferro-cyt c, comparisons were made between the complementary electrostatic surfaces of three cyt c peroxidase-cyt c complexes and the photosynthetic reaction center-cyt c complex, considering both iron oxidation states. The results obtained were consistent with a sliding mechanism for the electron shuttle on the surface of the protein complexes, promoted by the change in iron oxidation state. This mechanism was found to be in agreement with theoretical and NMR studies reported in the literature. Importantly, the analysis also provided a rationale for recognition of nonproductive associations. As we have previously reported the same conclusion on examination of redox partners of cyt c in the mitochondrial respiratory pathway, our hypothesis is that the proposed mechanism could represent a general exit strategy of monoheme cyts c and c2 in electron transfer complexes.


Asunto(s)
Respiración de la Célula/fisiología , Citocromos c/química , Citocromos c/metabolismo , Proteínas del Complejo del Centro de Reacción Fotosintética/metabolismo , Animales , Bacterias/metabolismo , Transporte de Electrón , Caballos , Cinética , Modelos Moleculares , Oxidación-Reducción , Peroxidasa , Conformación Proteica , Saccharomyces cerevisiae/metabolismo
16.
BMC Bioinformatics ; 15 Suppl 12: S2, 2014.
Artículo en Inglés | MEDLINE | ID: mdl-25474736

RESUMEN

BACKGROUND: The large influx of biological sequences poses the importance of identifying and correlating conserved regions in homologous sequences to acquire valuable biological knowledge. These conserved regions contain statistically significant residue associations as sequence patterns. Thus, patterns from two conserved regions co-occurring frequently on the same sequences are inferred to have joint functionality. A method for finding conserved regions in protein families with frequent co-occurrence patterns is proposed. The biological significance of the discovered clusters of conserved regions with co-occurrences patterns can be validated by their three-dimensional closeness of amino acids and the biological functionality found in those regions as supported by published work. METHODS: Using existing algorithms, we discovered statistically significant amino acid associations as sequence patterns. We then aligned and clustered them into Aligned Pattern Clusters (APCs) corresponding to conserved regions with amino acid conservation and variation. When one APC frequently co-occurred with another APC, the two APCs have high co-occurrence. We then clustered APCs with high co-occurrence into what we refer to as Co-occurrence APC Clusters (Co-occurrence Clusters). RESULTS: Our results show that for Co-occurrence Clusters, the three-dimensional distance between their amino acids is closer than average amino acid distances. For the Co-occurrence Clusters of the ubiquitin and the cytochrome c families, we observed biological significance among the residing amino acids of the APCs within the same cluster. In ubiquitin, the residues are responsible for ubiquitination as well as conventional and unconventional ubiquitin-bindings. In cytochrome c, amino acids in the first co-occurrence cluster contribute to binding of other proteins in the electron transport chain, and amino acids in the second co-occurrence cluster contribute to the stability of the axial heme ligand. CONCLUSIONS: Thus, our co-occurrence clustering algorithm can efficiently find and rank conserved regions that contain patterns that frequently co-occurring on the same proteins. Co-occurring patterns are biologically significant due to their three-dimensional closeness and other evidences reported in literature. These results play an important role in drug discovery as biologists can quickly identify the target for drugs to conduct detailed preclinical studies.


Asunto(s)
Algoritmos , Análisis de Secuencia de Proteína/métodos , Homología de Secuencia de Aminoácido , Aminoácidos/química , Análisis por Conglomerados , Citocromos c/química , Conformación Proteica , Proteínas/química , Proteínas/clasificación , Alineación de Secuencia , Ubiquitina/química
17.
J Am Chem Soc ; 136(52): 18087-99, 2014 Dec 31.
Artículo en Inglés | MEDLINE | ID: mdl-25475739

RESUMEN

Axial Cu-S(Met) bonds in electron transfer (ET) active sites are generally found to lower their reduction potentials. An axial S(Met) bond is also present in cytochrome c (cyt c) and is generally thought to increase the reduction potential. The highly covalent nature of the porphyrin environment in heme proteins precludes using many spectroscopic approaches to directly study the Fe site to experimentally quantify this bond. Alternatively, L-edge X-ray absorption spectroscopy (XAS) enables one to directly focus on the 3d-orbitals in a highly covalent environment and has previously been successfully applied to porphyrin model complexes. However, this technique cannot be extended to metalloproteins in solution. Here, we use metal K-edge XAS to obtain L-edge like data through 1s2p resonance inelastic X-ray scattering (RIXS). It has been applied here to a bis-imidazole porphyrin model complex and cyt c. The RIXS data on the model complex are directly correlated to L-edge XAS data to develop the complementary nature of these two spectroscopic methods. Comparison between the bis-imidazole model complex and cyt c in ferrous and ferric oxidation states show quantitative differences that reflect differences in axial ligand covalency. The data reveal an increased covalency for the S(Met) relative to N(His) axial ligand and a higher degree of covalency for the ferric states relative to the ferrous states. These results are reproduced by DFT calculations, which are used to evaluate the thermodynamics of the Fe-S(Met) bond and its dependence on redox state. These results provide insight into a number of previous chemical and physical results on cyt c.


Asunto(s)
Citocromos c/química , Imidazoles/química , Hierro/química , Metaloporfirinas/química , Metionina/química , Difracción de Rayos X , Citocromos c/metabolismo , Transporte de Electrón , Metaloporfirinas/metabolismo , Teoría Cuántica
18.
J Org Chem ; 79(20): 9594-602, 2014 Oct 17.
Artículo en Inglés | MEDLINE | ID: mdl-25231623

RESUMEN

Despite the importance of protein dimers and dimerization in biology, the formation of protein dimers through synthetic covalent chemistry has not found widespread use. In the case of maleimide-cysteine-based dimerization of proteins, we show here that when the proteins have the same charge, dimerization appears to be inherently difficult with yields around 1% or less, regardless of the nature of the spacer used or whether homo- or heteroprotein dimers are targeted. In contrast, if the proteins have opposing (complementary) charges, the formation of heteroprotein dimers proceeds much more readily, and in the case of one high molecular weight (>80 kDa) synthetic dimer between cytochrome c and bovine serum albumin, a 30% yield of the purified, isolated dimer was achieved. This represents at least a 30-fold increase in yield for protein dimers formed from proteins with complementary charges, compared to when the proteins have the same charge, under otherwise similar conditions. These results illustrate the role of ionic supramolecular interactions in controlling the reactivity of proteins toward bis-functionalized spacers. The strategy here for effective synthetic dimerization of proteins could be very useful for developing novel approaches to study the important role of protein-protein interactions in chemical biology.


Asunto(s)
Citocromos c/síntesis química , Proteínas/síntesis química , Albúmina Sérica/síntesis química , Animales , Fenómenos Bioquímicos , Bovinos , Cisteína/química , Citocromos c/química , Dimerización , Modelos Moleculares , Peso Molecular , Multimerización de Proteína , Proteínas/química , Albúmina Sérica/química , Electricidad Estática
19.
Artículo en Inglés | MEDLINE | ID: mdl-24051281

RESUMEN

Uranium is harmful to human health due to its radiation damage and the ability of uranyl ion (UO2(2+)) to interact with various proteins and disturb their biological functions. Cytochrome b5 (cyt b5) is a highly negatively charged heme protein and plays a key role in mediating cytochrome c (cyt c) signaling in apoptosis by forming a dynamic cyt b5-cyt c complex. In previous molecular modeling study in combination with UV-Vis studies, we found that UO2(2+) is capable of binding to cyt b5 at surface residues, Glu37 and Glu43. In this study, we further investigated the structural consequences of cyt b5 and cyt c, as well as cyt b5-cyt c complex, upon uranyl binding, by fluorescence spectroscopic and circular dichroism techniques. Moreover, we proposed a uranyl binding site for cyt c at surface residues, Glu66 and Glu69, by performing a molecular modeling study. It was shown that uranyl binds to cyt b5 (KD=10 µM), cyt c (KD=87 µM), and cyt b5-cyt c complex (KD=30 µM) with a different affinity, which slightly alters the protein conformation and disturbs the interaction of cyt b5-cyt c complex. Additionally, we investigated the functional consequences of uranyl binding to the protein surface, which decreases the inherent peroxidase activity of cyt c. The information of uranyl-cyt b5/cyt c interactions gained in this study likely provides a clue for the mechanism of uranyl toxicity.


Asunto(s)
Citocromos b5/metabolismo , Citocromos c/metabolismo , Uranio/metabolismo , Animales , Bovinos , Citocromos b5/química , Citocromos c/química , Caballos , Humanos , Iones , Cinética , Modelos Moleculares , Peroxidasa/metabolismo , Unión Proteica , Espectrometría de Fluorescencia , Uranio/química
20.
BMC Complement Altern Med ; 13: 228, 2013 Sep 17.
Artículo en Inglés | MEDLINE | ID: mdl-24044655

RESUMEN

BACKGROUND: Reactive oxygen species play important roles in renal calcium crystallization. In this study, we examined the effects of catechin, which have been shown to have antioxidant properties on the renal calcium crystallization. METHODS: In the vitro experiment, the changes of the mitochondrial membrane potential, expression of superoxide dismutase (SOD), 4-hydroxynonenal (4-HNE), cytochrome c, and cleaved caspase 3 were measured to show the effects of catechin treatment on the NRK-52E cells induced by calcium oxalate monohydrate (COM). In the vivo study, Sprague-Dawley rats were administered 1% ethylene glycol (EG) to generate a rat kidney stone model and then treated with catechin (2.5 and 10 mg/kg/day) for 14 days. The urine and serum variables were dected on 7 and 14 days after EG administration. The expression of cytochrome c, cleaved caspase 3, SOD, osteopontin (OPN), malondialdehyde (MDA), 8-hydroxy-2'-deoxyguanosine (8-OHdG) in kidney were measured. Furthermore, the mitochondrial microstructure in the kidney was also examined by transmission electron microscopy. RESULTS: Catechin treatment could prevent the changes in mitochondrial membrane potential and expression of SOD, 4-HNE, cytochrome c, and cleaved caspase 3 in NRK-52E cells induced by the COM. For the in vivo experiments, the EG administration induced renal calcium crystallization was also prevented by the catechin. The expression of SOD, OPN, MDA, OPN and 8-OHdG, were increased after EG administration and this increase was diminished by catechin. Moreover, catechin also prevented EG induced mitochondrial collapse in rat. CONCLUSIONS: Catechin has preventive effects on renal calcium crystallization both in vivo and in vitro, and provide a potential therapeutic treatment for this disease.


Asunto(s)
Oxalato de Calcio/efectos adversos , Catequina/farmacología , Glicol de Etileno/toxicidad , Cálculos Renales/inducido químicamente , Sustancias Protectoras/farmacología , Animales , Antioxidantes/análisis , Antioxidantes/química , Antioxidantes/metabolismo , Caspasa 3/análisis , Caspasa 3/química , Caspasa 3/metabolismo , Línea Celular , Cristalización , Citocromos c/análisis , Citocromos c/química , Citocromos c/metabolismo , Inmunohistoquímica , Riñón/patología , Riñón/ultraestructura , Cálculos Renales/metabolismo , Cálculos Renales/patología , Masculino , Potencial de la Membrana Mitocondrial/efectos de los fármacos , Osteopontina/análisis , Osteopontina/química , Osteopontina/metabolismo , Ratas , Ratas Sprague-Dawley , Superóxido Dismutasa/análisis , Superóxido Dismutasa/química , Superóxido Dismutasa/metabolismo
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