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1.
Microb Cell Fact ; 23(1): 9, 2024 Jan 03.
Artículo en Inglés | MEDLINE | ID: mdl-38172920

RESUMEN

BACKGROUND: Existing plasmid systems offer a fundamental foundation for gene expression in Cupriavidus necator; however, their applicability is constrained by the limitations of conjugation. Low segregational stabilities and plasmid copy numbers, particularly in the absence of selection pressure, pose challenges. Phytases, recognized for their widespread application as supplements in animal feed to enhance phosphate availability, present an intriguing prospect for heterologous production in C. necator. The establishment of stable, high-copy number plasmid that can be electroporated would support the utilization of C. necator for the production of single-cell protein from CO2. RESULTS: In this study, we introduce a novel class of expression plasmids specifically designed for electroporation. These plasmids contain partitioning systems to boost segregation stability, eliminating the need for selection pressure. As a proof of concept, we successfully produced Escherichia coli derived AppA phytase in C. necator H16 PHB- 4 using these improved plasmids. Expression was directed by seven distinct promoters, encompassing the constitutive j5 promoter, hydrogenase promoters, and those governing the Calvin-Benson-Bassham cycle. The phytase activities observed in recombinant C. necator H16 strains ranged from 2 to 50 U/mg of total protein, contingent upon the choice of promoter and the mode of cell cultivation - heterotrophic or autotrophic. Further, an upscaling experiment conducted in a 1 l fed-batch gas fermentation system resulted in the attainment of the theoretical biomass. Phytase activity reached levels of up to 22 U/ml. CONCLUSION: The new expression system presented in this study offers a highly efficient platform for protein production and a wide array of synthetic biology applications. It incorporates robust promoters that exhibit either constitutive activity or can be selectively activated when cells transition from heterotrophic to autotrophic growth. This versatility makes it a powerful tool for tailored gene expression. Moreover, the potential to generate active phytases within C. necator H16 holds promising implications for the valorization of CO2 in the feed industry.


Asunto(s)
6-Fitasa , Cupriavidus necator , Cupriavidus necator/metabolismo , 6-Fitasa/genética , 6-Fitasa/metabolismo , Dióxido de Carbono/metabolismo , Plásmidos/genética , Regiones Promotoras Genéticas , Escherichia coli/genética , Escherichia coli/metabolismo
2.
Water Res ; 247: 120766, 2023 Dec 01.
Artículo en Inglés | MEDLINE | ID: mdl-37897996

RESUMEN

Biodegradable biopolymers, such as polyhydroxyalkanoates (PHAs), have emerged as an alternative to petrochemical-based plastics. The present work explores the production of PHAs based on the biotransformation of potato processing wastewater and addresses two different strategies for PHA recovery. To this end, culture conditions for PHA synthesis by Cupriavidus necator DSM 545 were optimized on a laboratory scale using a response surface methodology-based experimental design. Optimal conditions rendered a PHB, poly(3-hydroxybutyrate), accumulation of 83.74 ± 2.37 % (5.1 ± 0.2 gL-1), a 1.4-fold increase compared to the initial conditions. Moreover, polymer extraction with non-halogenated agent improved PHB recovery compared to chloroform method (PHB yield up to 78.78 ± 0.57 %), while maintaining PHB purity. (99.83 ± 4.95 %). Overall, the present work demonstrated the potential valorization of starch-based wastewater by biotransformation into PHBs, a high value-added product, and showed that recovery approaches more eco-friendly than the traditional treatments could be applied to PHB recovery to some extent.


Asunto(s)
Cupriavidus necator , Polihidroxialcanoatos , Solanum tuberosum , Ácido 3-Hidroxibutírico/metabolismo , Cupriavidus necator/metabolismo , Aguas Residuales , Solanum tuberosum/metabolismo , Almidón , Biotransformación , Poliésteres/metabolismo
3.
Bioprocess Biosyst Eng ; 45(10): 1719-1729, 2022 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-36121506

RESUMEN

Polyhydroxybutyrate (PHB) is a bio-based, biodegradable and biocompatible plastic that has the potential to replace petroleum-based plastics. Lignocellulosic biomass is a promising feedstock for industrial fermentation to produce bioproducts such as polyhydroxybutyrate (PHB). However, the pretreatment processes of lignocellulosic biomass lead to the generation of toxic byproducts, such as furfural, 5-HMF, vanillin, and acetate, which affect microbial growth and productivity. In this study, to reduce furfural toxicity during PHB production from lignocellulosic hydrolysates, we genetically engineered Cupriavidus necator NCIMB 11599, by inserting the nicotine amide salvage pathway genes pncB and nadE to increase the NAD(P)H pool. We found that the expression of pncB was the most effective in improving tolerance to inhibitors, cell growth, PHB production and sugar consumption rate. In addition, the engineered strain harboring pncB showed higher PHB production using lignocellulosic hydrolysates than the wild-type strain. Therefore, the application of NAD salvage pathway genes improves the tolerance of Cupriavidus necator to lignocellulosic-derived inhibitors and should be used to optimize PHB production.


Asunto(s)
Cupriavidus necator , Petróleo , Amidas/metabolismo , Cupriavidus necator/genética , Cupriavidus necator/metabolismo , Azúcares de la Dieta/metabolismo , Azúcares de la Dieta/farmacología , Furaldehído/farmacología , Inhibidores de Crecimiento/metabolismo , Inhibidores de Crecimiento/farmacología , Hidroxibutiratos/metabolismo , Lignina , NAD/metabolismo , NAD/farmacología , Nicotina/metabolismo , Nicotina/farmacología , Nitrobencenos , Petróleo/metabolismo , Plásticos
4.
J Biosci Bioeng ; 134(4): 288-294, 2022 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-35953354

RESUMEN

Poly[(R)-3-hydroxybutyrate-co-(R)-3-hydroxyhexanoate] [P(3HB-co-3HHx)] has a high potential to serve as a commercial bioplastic due to its biodegradability, thermoplastic and mechanical properties. The properties of this copolymer are greatly affected by the composition of 3HHx monomer. One of the most efficient ways to modulate the composition of 3HHx monomer in P(3HB-co-3HHx) is by manipulating the (R)-3HHx-CoA monomer supply. In this study, a new (R)-specific enoyl-CoA hydratase originating from a non-PHA producer, Streptomyces sp. strain CFMR 7 (PhaJSs), was characterized and found to be effective in supplying 3HHx monomer during in vivo production of P(3HB-co-3HHx) copolymer. The P(3HB-co-3HHx) copolymer produced from the Cupriavidus necator transformant that harbors phaJSs, PHB-4/pBBR1-CBP-M-CPF4JSs, showed enhanced 3HHx incorporation of up to 11 mol% without affecting the P(3HB-co-3HHx) production when palm oil was used as the carbon source. In addition, both kcat and kcat/Km of PhaJSs were higher toward the C6 than the shorter C4 substrates, underscoring the preference for 3-hydroxyhexanoyl-CoA. These results suggest that PhaJSs has a significant ability to supply 3HHx monomers for PHA biosynthesis via ß-oxidation and can be applied for metabolic engineering of robust PHA-producing strains.


Asunto(s)
Cupriavidus necator , Streptomyces , Ácido 3-Hidroxibutírico/metabolismo , Caproatos/metabolismo , Carbono/metabolismo , Coenzima A/metabolismo , Cupriavidus necator/metabolismo , Enoil-CoA Hidratasa/metabolismo , Aceite de Palma/metabolismo , Streptomyces/metabolismo
5.
Appl Microbiol Biotechnol ; 106(8): 3021-3032, 2022 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-35451630

RESUMEN

Poly[(R)-3-hydroxybutyrate-co-(R)-3-hydroxyhexanoate] (PHBHHx) is a type of biopolyester of the polyhydroxyalkanoate group (PHA). Due to a wide range of properties resulting from the alteration of the (R)-3-hydroxyhexanoate (3HHx) composition, PHBHHx is getting a lot of attention as a substitute to conventional plastic materials for various applications. Cupriavidus necator H16 is the most promising PHA producer and has been genetically engineered to produce PHBHHx efficiently for many years. Nevertheless, the role of individual genes involved in PHBHHx biosynthesis is not well elaborated. C. necator H16 possesses six potential physiologically active ß-ketothiolase genes identified by transcriptome analysis, i.e., phaA, bktB, bktC (h16_A0170), h16_A0462, h16_A1528, and h16_B0759. In this study, we focused on the functionality of these genes in vivo in relation to 3HHx monomer supply. Gene deletion experiments identified BktB and H16_A1528 as important ß-ketothiolases for C6 metabolism in ß-oxidation. Furthermore, in the bktB/h16_A1528 double-deletion strain, the proportion of 3HHx composition of PHBHHx produced from sugar was very low, whereas that from plant oil was significantly higher. In fact, the proportion reached 36.2 mol% with overexpression of (R)-specifc enoyl-CoA hydratase (PhaJ) and PHA synthase. Furthermore, we demonstrated high-density production (196 g/L) of PHBHHx with high 3HHx (32.5 mol%) by fed-batch fermentation with palm kernel oil. The PHBHHx was amorphous according to the differential scanning calorimetry analysis. KEY POINTS: • Role of six ß-ketothiolases in PHBHHx biosynthesis was investigated in vivo. • Double-deletion of bktB/h16_A1528 results in high 3HHx composition with plant oil. • Amorphous PHBHHx with 32.5 mol% 3HHx was produced in high density by jar fermenter.


Asunto(s)
Cupriavidus necator , Polihidroxialcanoatos , Acetil-CoA C-Aciltransferasa/genética , Acetil-CoA C-Aciltransferasa/metabolismo , Cupriavidus necator/genética , Cupriavidus necator/metabolismo , Hidroxibutiratos/metabolismo , Aceites de Plantas/metabolismo , Polihidroxialcanoatos/metabolismo
6.
Sci Rep ; 11(1): 14267, 2021 07 12.
Artículo en Inglés | MEDLINE | ID: mdl-34253787

RESUMEN

Process engineering of biotechnological productions can benefit greatly from comprehensive analysis of microbial physiology and metabolism. Ralstonia eutropha (syn. Cupriavidus necator) is one of the best studied organisms for the synthesis of biodegradable polyhydroxyalkanoate (PHA). A comprehensive metabolomic study during bioreactor cultivations with the wild-type (H16) and an engineered (Re2058/pCB113) R. eutropha strain for short- and or medium-chain-length PHA synthesis has been carried out. PHA production from plant oil was triggered through nitrogen limitation. Sample quenching allowed to conserve the metabolic states of the cells for subsequent untargeted metabolomic analysis, which consisted of GC-MS and LC-MS analysis. Multivariate data analysis resulted in identification of significant changes in concentrations of oxidative stress-related metabolites and a subsequent accumulation of antioxidative compounds. Moreover, metabolites involved in the de novo synthesis of GDP-L-fucose as well as the fucose salvage pathway were identified. The related formation of fucose-containing exopolysaccharides potentially supports the emulsion-based growth of R. eutropha on plant oils.


Asunto(s)
Cupriavidus necator/metabolismo , Fucosa/química , Metabolómica/métodos , Aceites de Plantas/metabolismo , Antioxidantes/química , Proteínas Bacterianas/metabolismo , Biopolímeros/química , Reactores Biológicos , Biotecnología , Medios de Cultivo/metabolismo , Industrias , Análisis Multivariante , Nitrógeno/química , Estrés Oxidativo , Polihidroxialcanoatos/química , Polisacáridos/metabolismo
7.
N Biotechnol ; 60: 12-19, 2021 Jan 25.
Artículo en Inglés | MEDLINE | ID: mdl-32846214

RESUMEN

Oil extracted from spent coffee grounds (SCG) [yield 16.8 % (w/w)] was discovered to be a highly suitable carbon substrate for the biosynthesis of poly(3-hydroxybutyrate-co-3-hydroxyvalerate) [P(3HB-co-3 HV)] copolymers by Cupriavidus necator DSM 545 in the absence of any traditional 3 HV precursors. Cells cultivated in a 3 L bioreactor (batch) reached a total biomass concentration of 8.9 g L-1 with a P(3HB-co-3 HV) (6.8 mol% 3 HV) content of 89.6 % (w/w). In contrast, cells grown on sunflower oil reached a total biomass concentration of 9.4 gL-1 with a P(3HB-co-3 HV) (0.2 mol% 3 HV) content of 88.1 % (w/w). It is proposed that the organism could synthesize 3 HV monomers from succinyl CoA, an intermediate of the tricarboxylic acid (TCA) cycle, via the succinate-propionate metabolic pathway.


Asunto(s)
Café/química , Cupriavidus necator/metabolismo , Aceites/química , Poliésteres/metabolismo , Café/metabolismo , Cupriavidus necator/química , Estructura Molecular , Aceites/aislamiento & purificación , Aceites/metabolismo , Poliésteres/química
8.
Int J Biol Macromol ; 164: 1600-1607, 2020 Dec 01.
Artículo en Inglés | MEDLINE | ID: mdl-32768477

RESUMEN

The acyl-CoA dehydrogenase (FadE) and (R)-specific enoyl-CoA hydratase (PhaJ) are functionally related to the degradation of fatty acids and the synthesis of polyhydroxyalkanoates (PHAs). To verify this, a recombinant Cupriavidus necator H16 harboring the plasmid -pMPJAS03- with fadE from Escherichia coli strain K12 and phaJ1 from Pseudomonas putida strain KT2440 under the arabinose promoter (araC-PBAD) was constructed. The impact of co-expressing fadE and phaJ genes on C. necator H16/pMPJAS03 maintaining the wild-type synthase on short-chain-length/medium-chain-length PHA formation from canola or avocado oil at different arabinose concentrations was investigated. The functional activity of fadEE.c led to obtaining higher biomass and PHA concentrations compared to the cultures without expressing the gene. While high transcriptional levels of phaJ1P.p, at 0.1% of arabinose, aid the wild-type synthase to polymerize larger-side chain monomers, such as 3-Hydroxyoctanoate (3HO) and 3-Hydroxydecanoate (3HD). The presence of even small amounts of 3HO and 3HD in the co-polymers significantly depresses the melting temperature of the polymers, compared to those composed of pure 3-hydroxybutyrate (3HB). Our data presents supporting evidence that the synthesis of larger-side chain monomers by the recombinant strain relies not only upon the affinity of the wild-type synthase but also on the functionality of the intermediate supplying enzymes.


Asunto(s)
Acil-CoA Deshidrogenasa/genética , Cupriavidus necator/genética , Enoil-CoA Hidratasa/genética , Aceites de Plantas/metabolismo , Polihidroxialcanoatos/biosíntesis , Polihidroxialcanoatos/genética , Acil-CoA Deshidrogenasa/metabolismo , Arabinosa/genética , Arabinosa/metabolismo , Caprilatos/metabolismo , Cupriavidus necator/metabolismo , Ácidos Decanoicos/metabolismo , Enoil-CoA Hidratasa/metabolismo , Escherichia coli/genética , Escherichia coli/metabolismo , Ácidos Grasos/genética , Ácidos Grasos/metabolismo , Hidroxibutiratos/metabolismo , Plásmidos/genética , Polihidroxialcanoatos/metabolismo , Regiones Promotoras Genéticas/genética , Pseudomonas putida/genética , Pseudomonas putida/metabolismo , Transcripción Genética/genética
9.
Int J Biol Macromol ; 164: 121-130, 2020 Dec 01.
Artículo en Inglés | MEDLINE | ID: mdl-32679327

RESUMEN

The study addresses the growth of the wild-type strain Cupriavidus necator B-10646 and synthesis of polyhydroxyalkanoates by this strain on media containing plant oils with different compositions of fatty acids: palm, Siberian oilseed, and refined and unrefined sunflower seed oils. The study showed that the best carbon substrate was palm oil. Comparison of fatty acid compositions of the starting oils and unutilized residual substrates showed that C. necator B-10646 cells consumed the fatty acids from palm oil evenly while in experiments with other oils, they utilized polyenoic fatty acids first. Higher production parameters of the culture were obtained by preparation of emulsified oil medium using Tween 80 and sodium cocoyl glutamate as emulsifiers. All polyhydroxyalkanoate specimens were terpolymers that contained 3-hydroxybutyrate as the major component and minor amounts of 3-hydroxyvalerate (0.9-1.9 mol%) and 3-hydroxyhexanoate (0.5-1.1 mol%). Molecular weight of polyhydroxyalkanoate specimens depended on the type of plant oil and emulsifier.


Asunto(s)
Medios de Cultivo/farmacología , Cupriavidus necator/efectos de los fármacos , Aceites de Plantas/farmacología , Polihidroxialcanoatos/biosíntesis , Técnicas Bacteriológicas , Brassicaceae , Cupriavidus necator/crecimiento & desarrollo , Cupriavidus necator/metabolismo , Emulsionantes , Emulsiones , Ácidos Grasos/análisis , Ácidos Grasos/farmacología , Peso Molecular , Aceite de Palma/farmacología , Polihidroxialcanoatos/análisis , Polisorbatos , Aceite de Girasol/farmacología
10.
Int J Biol Macromol ; 159: 250-257, 2020 Sep 15.
Artículo en Inglés | MEDLINE | ID: mdl-32417540

RESUMEN

Among the various types of polyhydroxyalkanoate (PHA), poly[(R)-3-hydroxybutyrate-co-(R)-3-hydroxyhexanoate] [P(3HB-co-3HHx)] has a high potential to serve as commercial bioplastic due to its striking resemblance to petroleum-based plastics. In this study, five different genotypes of Cupriavidusnecator transformants harbouring the phaCBP-M-CPF4 gene (including PHB¯4/pBBR1-CBP-M-CPF4) were developed to evaluate the efficiency of 3HHx monomer incorporation. The fraction of 3-hydroxyhexanoate (3HHx) monomer that was incorporated into the PHA synthesized by these C. necator transformants using palm oil as the sole carbon source, was examined. Overall, co-expression of enoyl-CoA hydratase gene (phaJ1) from Pseudomonas aeruginosa, along with PHA synthase (PhaC), increased the 3HHx composition in the PHA copolymer. The differences in the enzyme activities of ß-ketothiolase (PhaACn) and NADPH-dependent acetoacetyl-CoA reductase (PhaBCn) of the C. necator mutant hosts used in this study, were observed to alter the 3HHx composition and molecular weight of the PHA copolymer produced. The 3HHx fractions in the P(3HB-co-3HHx) produced by these C. necator transformants ranged between 1 and 18 mol%, while the weight-average molecular weight ranged from 0.7 × 106 to 1.8 × 106 Da. PhaCBP-M-CPF4 displayed a typical initial lag-phase and a relatively low synthase activity in the in vitro enzyme assay, which is thought to be the reason for the higher molecular weights of PHA obtained in this study.


Asunto(s)
Ácido 3-Hidroxibutírico/biosíntesis , Aciltransferasas/metabolismo , Cupriavidus necator/metabolismo , Fermentación , Aceites de Plantas/metabolismo , Ácido 3-Hidroxibutírico/aislamiento & purificación , Caproatos/aislamiento & purificación , Activación Enzimática , Peso Molecular , Oxidación-Reducción , Aceite de Palma/metabolismo , Plásmidos/química , Polihidroxialcanoatos/biosíntesis , Polímeros/metabolismo , Transformación Bacteriana
11.
Prep Biochem Biotechnol ; 49(5): 493-500, 2019.
Artículo en Inglés | MEDLINE | ID: mdl-30888247

RESUMEN

The production of polyhydroxyalkanoates (PHA) using digestate of chicken manure combined with waste sunflower oil as no-cost feedstocks in a multi-stage process was investigated. Using Cupriavidus necator H16 in combined culture media, a maximum PHA accumulation of 4.6 ± 0.2 g/L at 75.1 ± 1.4% of cell dry matter and a residual cell matter yield of 1.5 ± 0.1 g/L were obtained after 96 hr of cultivation (30 °C, 160 rpm, pH 7.0) in flask-based experiments. Manure was acidogenically fermented in a continuous stirring tank reactor in fed-batch mode. The bioreactor was operated at varying organic loading rates (OLR) and hydraulic retention times (HRT) ranging from 1-4 g volatile solids (VS)/L/d and 4-8 days, respectively. Optimal operation was observed at an OLR of 4 g VS/L/d and an HRT of 4 days. Analysis showed the presence of significant amounts of ammonia, potassium, magnesium, calcium, and trace elements, i.e. Fe, Cu, Ni, Mn, Co, Zn, Cr in the digestate. The micro-filtered digestate was utilized as a complex culture media base while waste oil served as an additional carbon source and supplemented for effective PHA production. The total volatile fatty acid content of digestate greatly affected the growth performance of the PHA-producing microorganism Cupriavidus necator H16.


Asunto(s)
Estiércol , Aceites de Plantas/metabolismo , Polihidroxialcanoatos/biosíntesis , Administración de Residuos/métodos , Animales , Pollos , Cupriavidus necator/metabolismo , Fermentación , Estiércol/microbiología , Polihidroxialcanoatos/aislamiento & purificación
12.
J Ind Microbiol Biotechnol ; 46(6): 783-790, 2019 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-30810844

RESUMEN

Massive emission of CO2 into atmosphere from consumption of carbon deposit is causing climate change. Researchers have applied metabolic engineering and synthetic biology techniques for improving CO2 fixation efficiency in many species. One solution might be the utilization of autotrophic bacteria, which have great potential to be engineered into microbial cell factories for CO2 fixation and the production of chemicals, independent of fossil resources. In this work, several pathways of Ralstonia eutropha H16 were modulated by manipulation of heterologous and endogenous genes related to fatty acid synthesis. The resulting strain B2(pCT, pFP) was able to produce 124.48 mg/g (cell dry weight) free fatty acids with fructose as carbon source, a fourfold increase over the parent strain H16. To develop a truly autotrophic fermentation technique with H2, CO2 and O2 as substrates, we assembled a relatively safe, continuous, lab-scale gas fermentation system using micro-fermentation tanks, H2 supplied by a hydrogen generator, and keeping the H2 to O2 ratio at 7:1. The system was equipped with a H2 gas alarm, rid of heat sources and placed into a fume hood to further improve the safety. With this system, the best strain B2(pCT, pFP) produced 60.64 mg free fatty acids per g biomass within 48 h, growing in minimal medium supplemented with 9 × 103 mL/L/h hydrogen gas. Thus, an autotrophic fermentation technique to produce fatty acids was successfully established, which might inspire further research on autotrophic gas fermentation with a safe, lab-scale setup, and provides an alternative solution for environmental and energy problems.


Asunto(s)
Procesos Autotróficos/fisiología , Técnicas Bacteriológicas/métodos , Cupriavidus necator/metabolismo , Ácidos Grasos/biosíntesis , Fermentación/fisiología , Ingeniería Metabólica/métodos , Gases/metabolismo , Hidrógeno/metabolismo
13.
J Microbiol Biotechnol ; 29(3): 382-391, 2019 Mar 28.
Artículo en Inglés | MEDLINE | ID: mdl-30661322

RESUMEN

Many poultry eggs are discarded worldwide because of infection (i.e., avian flu) or presence of high levels of pesticides. The possibility of adopting egg yolk as a source material to produce polyhydroxyalkanoate (PHA) biopolymer was examined in this study. Cupriavidus necator Re2133/pCB81 was used for the production of poly(3-hydroxybutyrate-co-3-hydroxyhexanoate) or poly(3HHx), a polymer that would normally require long-chain fatty acids as carbon feedstocks for the incorporation of 3HHx monomers. The optimal medium contained 5% egg yolk oil and ammonium nitrate as a nitrogen source, with a carbon/nitrogen (C/N) ratio of 20. Time course monitoring using the optimized medium was conducted for 5 days. Biomass production was 13.1 g/l, with 43.7% co-polymer content. Comparison with other studies using plant oils and the current study using egg yolk oil revealed similar polymer yields. Thus, discarded egg yolks could be a potential source of PHA.


Asunto(s)
Ácido 3-Hidroxibutírico/biosíntesis , Cupriavidus necator/metabolismo , Yema de Huevo/química , Biomasa , Biopolímeros/biosíntesis , Biopolímeros/química , Caproatos , Carbono/metabolismo , Medios de Cultivo/química , Cupriavidus necator/crecimiento & desarrollo , Ácidos Grasos/metabolismo , Lípidos/biosíntesis , Lípidos/química , Nitrógeno/metabolismo , Eliminación de Residuos Líquidos
14.
J Biosci Bioeng ; 127(3): 294-300, 2019 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-30243533

RESUMEN

Ralstonia eutropha H16 contains both NADH- and NADPH-dependent reduction activities to acetoacetyl-CoA, and the NADPH-dependent activity is mediated by PhaB paralogs with (R)-stereospecificity providing (R)-3-hydroxybutyryl (3HB)-CoA monomer for poly((R)-3-hydroxybutyrate) synthesis. In contrast, the gene encoding the NADH-dependent enzyme has not been identified to date. This study focused on the NADH-dependent dehydrogenase with (S)-stereospecificity in R. eutropha, as the (S)-specific reduction of acetoacetyl-CoA potentially competed with the polyester biosynthesis via (R)-3HB-CoA. The NADH-dependent reduction activity decreased to one-half when the gene for H16_A0282 (PaaH1), one of two homologs of clostridial NADH-3HB-CoA dehydrogenase, was deleted. The enzyme responsible for the remaining activity was partially purified and identified as H16_A0602 (Had) belonging to a different family from PaaH1. Gene disruption analysis elucidated that most of the NADH-dependent activity was mediated by PaaH1 and Had. The kinetic analysis using the recombinant enzymes indicated that PaaH1 and Had were both NADH-dependent 3-hydroxyacyl-CoA dehydrogenases with rather broad substrate specificity to 3-oxoacyl-CoAs of C4 to C8. The deletion of had in the R. eutropha strain previously engineered for biosynthesis of poly((R)-3-hydroxybutyrate-co-(R)-3-hydroxyhexanoate) led to decrease in the C6 composition of the copolyester synthesized from soybean oil, suggesting the role of Had in (S)-specific reduction of 3-oxohexanoyl-CoA with reverse ß-oxidation direction. Crotonase ((S)-specific enoyl-CoA hydratase) in R. eutropha H16 was also partially purified and identified as H16_A3307.


Asunto(s)
3-Hidroxiacil-CoA Deshidrogenasas/metabolismo , Cupriavidus necator/enzimología , NADP/metabolismo , Polihidroxialcanoatos/biosíntesis , Cupriavidus necator/metabolismo , Cinética , Oxidación-Reducción , Aceite de Soja/química , Especificidad por Sustrato
15.
Methods Enzymol ; 613: 117-151, 2018.
Artículo en Inglés | MEDLINE | ID: mdl-30509463

RESUMEN

Dioxygen-tolerant [NiFe]-hydrogenases are defined by their ability to catalyze the reaction, H2⇌2H++2e- even in the presence of O2. Catalytic and probably also noncatalytic mechanisms protect their active sites from being inactivated by reactive oxygen species, which makes them attractive subjects of investigation from both fundamental and applied perspectives. Prominent representatives of the O2-tolerant [NiFe]-hydrogenases have been isolated from the chemolithoautotrophic model organism Ralstonia eutropha H16, which can thrive in a simple mineral medium supplemented with the gases H2, O2, and CO2. In this chapter, we describe methods for cultivation and genetic manipulation of R. eutropha, both of which are prerequisites for the reproducible manufacturing of high-quality hydrogenase preparations. The purification procedures for two different O2-tolerant [NiFe]-hydrogenases from R. eutropha are described in detail, as well as the corresponding biochemical procedures used for the determination of the catalytic properties of these sophisticated enzymes.


Asunto(s)
Cupriavidus necator/enzimología , Cupriavidus necator/metabolismo , Hidrogenasas/metabolismo , Oxígeno/metabolismo , Catálisis , Cromatografía de Gases , Hidrógeno/metabolismo , Oxidación-Reducción , Plásmidos/genética
16.
Int J Biol Macromol ; 112: 598-607, 2018 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-29408394

RESUMEN

Polyhydroxyalkanoates (PHA) are biodegradable polymers found in the cellular masses of a wide range of bacterial species and the demand for PHA is steadily growing. In this work we have produced PHA from a low-cost substrate, Calophyllum inophyllum oil, using Cupriavidus necator. Effects of various process parameters such as Oil concentration, Nitrogen source and inoculum size on the production of PHA were studied using Response Surface Methodology. A quadratic equation was used in the model to fit the experimental data. It was found that the model could satisfactorily predict the PHA yield (R2=99.17%). Linear, quadratic and interaction terms used in the model were found to be statistically significant. Maximum PHA yield of 10.6gL-1 was obtained under the optimized conditions of oil concentration - 17.5%, inoculum concentration - 50mL/L and nitrogen content - 1.125gL-1, respectively. The product obtained was characterized using FTIR and NMR to confirm that it was PHA. The results demonstrate that C. inophyllum oil, a non-edible oil, can be potentially used as a low-cost substrate for the production of PHA.


Asunto(s)
Calophyllum/química , Cupriavidus necator/metabolismo , Aceites de Plantas/metabolismo , Polihidroxialcanoatos/biosíntesis , Análisis de Varianza , Reactores Biológicos , Vías Biosintéticas/efectos de los fármacos , Carbono/química , Espectroscopía de Resonancia Magnética , Nitrógeno/farmacología , Probabilidad , Análisis de Regresión , Espectroscopía Infrarroja por Transformada de Fourier , Termogravimetría , Urea/farmacología
17.
N Biotechnol ; 40(Pt B): 200-206, 2018 Jan 25.
Artículo en Inglés | MEDLINE | ID: mdl-28827158

RESUMEN

Many heterologous transformation studies have been carried out using the Cupriavidus necator PHB-4 strain to investigate the expression characteristics of various polyhydroxyalkanoate (PHA) synthase enzymes. In this study, we generated a recombinant C. necator PHB-4 strain by transforming a plasmid (pMRC03) harbouring the synthetic phaC2 gene of Pseudomonas putida CA-3. Under conditions favourable for expression of the phaC2 P.putCA-3 gene, canola oil was used as carbon source for the synthesis of PHAs. The expressed synthase polymerised monomers of 3-hydroxybutyrate (3-HB), 3-hydroxyvalerate (3-HV) and 3-hydroxyhexanoate (3-HHx) in the recombinant C. necator PHB-4 (pMRC03) strain. We then co-expressed the phaC2P.putCA-3 gene with the native phaC1C.ne gene in wild type Cupriavidus necator H16 (C. necator H16 (pMRC03)). This co-expression produced a PHA blend of 3-HB, 3-HV, 3-HHx and 3-hydroxyoctanoate (3-HO) monomers in the presence of canola oil. Gas chromatography analysis revealed the presence of 94mol% 3-HB, 1mol% 3-HV, 4mol% 3-HHx and 1mol% 3-HO in a tetra-polymer. Thus, we confirmed that a synthetic phaC2 gene encoding the synthase enzyme is functionally active with substrates ranging from short to medium chain length PHAs.


Asunto(s)
Aciltransferasas/genética , Carbono/metabolismo , Cupriavidus necator/metabolismo , Regulación Enzimológica de la Expresión Génica/genética , Polihidroxialcanoatos/biosíntesis , Aceite de Brassica napus/metabolismo , Aciltransferasas/metabolismo , Carbono/química , Polihidroxialcanoatos/química , Pseudomonas putida/enzimología , Aceite de Brassica napus/química
18.
J Biotechnol ; 265: 31-39, 2018 Jan 10.
Artículo en Inglés | MEDLINE | ID: mdl-29101024

RESUMEN

Polyhydroxyalkanoates (PHAs) are produced in microbes as a source of carbon and energy storage. They are biodegradable and have properties similar to synthetic plastics, which make them an interesting alternative to petroleum-based plastics. In this study, a refined method of recovering PHA from Cupriavidus necator biomass was proposed by incorporating the use of the yellow mealworm (the larval phase of the mealworm beetle, Tenebrio molitor) as partial purification machinery, followed by washing of the fecal pellets with distilled water and sodium hydroxide. The PHA contents of the cells used in this study were 55wt% (produced from palm olein) and 60 wt% (produced from waste animal fats). The treatment of distilled water and NaOH further increased the purity of PHA to 94%. In parallel, analysis of the 16S rRNA metagenomic sequencing of the mealworm gut microbiome has revealed remarkable changes in the bacterial diversity, especially between the mealworms fed with cells produced from palm olein and waste animal fats. This biological recovery of PHA from cells is an attempt to move towards a green and sustainable process with the aim of reducing the use of harmful solvents and strong chemicals during polymer purification. The results obtained show that - purities of >90%, without a reduction in the molecular weight, can be obtained through this integrative biological recovery approach. In addition, this study has successfully shown that the cells, regardless of their origins, were readily consumed by the mealworms, and there is a correlation between the feed type and the mealworm gut microbiome.


Asunto(s)
Cupriavidus necator/metabolismo , Microbioma Gastrointestinal , Polihidroxialcanoatos/biosíntesis , Tenebrio/microbiología , Animales , Heces/microbiología , Microbioma Gastrointestinal/genética , Larva/microbiología , Aceite de Palma/metabolismo , ARN Ribosómico 16S/genética
19.
Bioprocess Biosyst Eng ; 41(2): 229-235, 2018 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-29124334

RESUMEN

Polyhydroxyalkonate (PHA) is a type of polymer that has the potential to replace petro-based plastics. To make PHA production more economically feasible, there is a need to find a new carbon source and engineer microbes to produce a commercially valuable polymer. Coffee waste is an inexpensive raw material that contains fatty acids. It can act as a sustainable carbon source and seems quite promising with PHA production in Ralstonia eutropha, which is a well-known microbe for PHA accumulation, and has the potential to utilize fatty acids. In this study, to make poly(3-hydroxybutyrate-co-3-hydroxyhexanoate) (P(HB-co-HHx)), which has superior properties in terms of biodegradability, biocompatibility, and mechanical strength, engineered strain Ralstonia eutropha Re2133 overexpressing (R)-specific enoyl coenzyme-A hydratase (phaJ) and PHA synthetase (phaC2) with deletion of acetoacetyl Co-A reductases (phaB1, phaB2, and phaB3) was used to produce PHA from coffee waste oil. At a coffee oil concentration of 1.5%, and C/N ratio of 20, the R. eutropha Re2133 fermentation process results in 69% w/w of DCW PHA accumulation and consists of HB (78 mol%) and HHx (22 mol%). This shows the feasibility of using coffee waste oil for P(HB-co-HHx) production, as it is a low-cost fatty acid enriched waste material.


Asunto(s)
Ácido 3-Hidroxibutírico/biosíntesis , Proteínas Bacterianas , Café/química , Cupriavidus necator , Ingeniería Metabólica , Aceites de Plantas/química , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Caproatos , Cupriavidus necator/genética , Cupriavidus necator/metabolismo
20.
Appl Microbiol Biotechnol ; 101(20): 7497-7507, 2017 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-28889198

RESUMEN

Cupriavidus necator H16 is the most promising bacterium for industrial production of polyhydroxyalkanoates (PHAs) because of their remarkable ability to accumulate them in the cells. With genetic modifications, this bacterium can produce poly(3-hydroxybutyrate-co-3-hydroxyhexanoate) (PHBHHx), which has better physical properties, as well as poly(3-hydroxybutyrate) (PHB) using plant oils and sugars as a carbon source. Considering production cost, sucrose is a very attractive raw material because it is inexpensive; however, this bacterium cannot assimilate sucrose. Here, we used the sucrose utilization (csc) genes of Escherichia coli W to generate C. necator strains that can assimilate sucrose. Especially, glucose-utilizing recombinant C. necator strains harboring the sucrose hydrolase gene (cscA) and sucrose permease gene (cscB) of E. coli W grew well on sucrose as a sole carbon source and accumulated PHB. In addition, strains introduced with a crotonyl-CoA reductase gene (ccr), ethylmalonyl-CoA decarboxylase gene (emd), and some other genetic modifications besides the csc genes and the glucose-utilizing mutations produced PHBHHx with a 3-hydroxyhexanoate (3HHx) content of maximum approximately 27 mol% from sucrose. Furthermore, when one of the PHBHHx-producing strains was cultured with sucrose solution in a fed-batch fermentation, PHBHHx with a 3HHx content of approximately 4 mol% was produced and reached 113 g/L for 65 h, which is approximately 1.5-fold higher than that produced using glucose solution.


Asunto(s)
Cupriavidus necator/metabolismo , Proteínas de Escherichia coli/metabolismo , Ingeniería Metabólica , Polihidroxialcanoatos/metabolismo , Proteínas Recombinantes/metabolismo , Sacarosa/metabolismo , Carbono/metabolismo , Medios de Cultivo/química , Cupriavidus necator/genética , Cupriavidus necator/crecimiento & desarrollo , Proteínas de Escherichia coli/genética , Fermentación , Proteínas Recombinantes/genética
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