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1.
Skelet Muscle ; 10(1): 5, 2020 02 19.
Artículo en Inglés | MEDLINE | ID: mdl-32075690

RESUMEN

BACKGROUND: Hexose-6-Phosphate Dehydrogenase (H6PD) is a generator of NADPH in the Endoplasmic/Sarcoplasmic Reticulum (ER/SR). Interaction of H6PD with 11ß-hydroxysteroid dehydrogenase type 1 provides NADPH to support oxo-reduction of inactive to active glucocorticoids, but the wider understanding of H6PD in ER/SR NAD(P)(H) homeostasis is incomplete. Lack of H6PD results in a deteriorating skeletal myopathy, altered glucose homeostasis, ER stress and activation of the unfolded protein response. Here we further assess muscle responses to H6PD deficiency to delineate pathways that may underpin myopathy and link SR redox status to muscle wide metabolic adaptation. METHODS: We analysed skeletal muscle from H6PD knockout (H6PDKO), H6PD and NRK2 double knockout (DKO) and wild-type (WT) mice. H6PDKO mice were supplemented with the NAD+ precursor nicotinamide riboside. Skeletal muscle samples were subjected to biochemical analysis including NAD(H) measurement, LC-MS based metabolomics, Western blotting, and high resolution mitochondrial respirometry. Genetic and supplement models were assessed for degree of myopathy compared to H6PDKO. RESULTS: H6PDKO skeletal muscle showed adaptations in the routes regulating nicotinamide and NAD+ biosynthesis, with significant activation of the Nicotinamide Riboside Kinase 2 (NRK2) pathway. Associated with changes in NAD+ biosynthesis, H6PDKO muscle had impaired mitochondrial respiratory capacity with altered mitochondrial acylcarnitine and acetyl-CoA metabolism. Boosting NAD+ levels through the NRK2 pathway using the precursor nicotinamide riboside elevated NAD+/NADH but had no effect to mitigate ER stress and dysfunctional mitochondrial respiratory capacity or acetyl-CoA metabolism. Similarly, H6PDKO/NRK2 double KO mice did not display an exaggerated timing or severity of myopathy or overt change in mitochondrial metabolism despite depression of NAD+ availability. CONCLUSIONS: These findings suggest a complex metabolic response to changes in muscle SR NADP(H) redox status that result in impaired mitochondrial energy metabolism and activation of cellular NAD+ salvage pathways. It is possible that SR can sense and signal perturbation in NAD(P)(H) that cannot be rectified in the absence of H6PD. Whether NRK2 pathway activation is a direct response to changes in SR NAD(P)(H) availability or adaptation to deficits in metabolic energy availability remains to be resolved.


Asunto(s)
Músculo Esquelético/metabolismo , Fosfotransferasas (Aceptor de Grupo Alcohol)/metabolismo , Retículo Sarcoplasmático/metabolismo , Acetilcoenzima A/metabolismo , Animales , Deshidrogenasas de Carbohidratos/genética , Deshidrogenasas de Carbohidratos/metabolismo , Carnitina/análogos & derivados , Carnitina/metabolismo , Femenino , Masculino , Metaboloma , Ratones , Ratones Endogámicos C57BL , Mitocondrias Musculares/metabolismo , Niacinamida/análogos & derivados , Niacinamida/metabolismo , Fosfotransferasas (Aceptor de Grupo Alcohol)/genética , Compuestos de Piridinio/metabolismo
2.
Appl Environ Microbiol ; 85(13)2019 07 01.
Artículo en Inglés | MEDLINE | ID: mdl-31028028

RESUMEN

Pyranose 2-oxidase (POx) has long been accredited a physiological role in lignin degradation, but evidence to provide insights into the biochemical mechanisms and interactions is insufficient. There are ample data in the literature on the oxidase and dehydrogenase activities of POx, yet the biological relevance of this duality could not be established conclusively. Here we present a comprehensive biochemical and phylogenetic characterization of a novel pyranose 2-oxidase from the actinomycetous bacterium Kitasatospora aureofaciens (KaPOx) as well as a possible biomolecular synergism of this enzyme with peroxidases using phenolic model substrates in vitro A phylogenetic analysis of both fungal and bacterial putative POx-encoding sequences revealed their close evolutionary relationship and supports a late horizontal gene transfer of ancestral POx sequences. We successfully expressed and characterized a novel bacterial POx gene from K. aureofaciens, one of the putative POx genes closely related to well-known fungal POx genes. Its biochemical characteristics comply with most of the classical hallmarks of known fungal pyranose 2-oxidases, i.e., reactivity with a range of different monosaccharides as electron donors as well as activity with oxygen, various quinones, and complexed metal ions as electron acceptors. Thus, KaPOx shows the pronounced duality of oxidase and dehydrogenase similar to that of fungal POx. We further performed efficient redox cycling of aromatic lignin model compounds between KaPOx and manganese peroxidase (MnP). In addition, we found a Mn(III) reduction activity in KaPOx, which, in combination with its ability to provide H2O2, implies this and potentially other POx as complementary enzymatic tools for oxidative lignin degradation by specialized peroxidases.IMPORTANCE Establishment of a mechanistic synergism between pyranose oxidase and (manganese) peroxidases represents a vital step in the course of elucidating microbial lignin degradation. Here, the comprehensive characterization of a bacterial pyranose 2-oxidase from Kitasatospora aureofaciens is of particular interest for several reasons. First, the phylogenetic analysis of putative pyranose oxidase genes reveals a widespread occurrence of highly similar enzymes in bacteria. Still, there is only a single report on a bacterial pyranose oxidase, stressing the need of closing this gap in the scientific literature. In addition, the relatively small K. aureofaciens proteome supposedly supplies a limited set of enzymatic functions to realize lignocellulosic biomass degradation. Both enzyme and organism therefore present a viable model to study the mechanisms of bacterial lignin decomposition, elucidate physiologically relevant interactions with specialized peroxidases, and potentially realize biotechnological applications.


Asunto(s)
Proteínas Bacterianas/genética , Deshidrogenasas de Carbohidratos/genética , Peroxidasas/genética , Streptomycetaceae/genética , Proteínas Bacterianas/metabolismo , Deshidrogenasas de Carbohidratos/metabolismo , Oxidación-Reducción , Oxidorreductasas/metabolismo , Peroxidasas/metabolismo , Streptomycetaceae/enzimología , Streptomycetaceae/metabolismo
3.
J Cell Biochem ; 119(2): 1726-1732, 2018 02.
Artículo en Inglés | MEDLINE | ID: mdl-28786497

RESUMEN

Cholera is a serious threat to a large population in the under developed countries. Though oral rehydration therapy is the preferred choice of treatment, the use of antibiotics could reduce the microbial load in the case of severity. The use of antibiotics is also sought in the scenarios where there is problem with access to clean water. However, Vibrio cholera (V. cholerae) strains have developed resistance to antibiotics such as amoxicillin, ampicillin, chloramphenicol, doxycycline, erythromycin, and tetracycline. In this work, we have addressed the resistance issue by targeting MurB protein which is essential for the cell wall biosynthesis in V. cholerae. 20 Phytochemical compounds were chosen to screen the potential inhibitors against V. cholerae to avoid the complications faced by synthesis of small molecules. The molecular docking and dynamics study indicates that quercetin is the most potential and stable inhibitor of Murb.


Asunto(s)
Antibacterianos/farmacología , Deshidrogenasas de Carbohidratos/metabolismo , Inhibidores Enzimáticos/farmacología , Fitoquímicos/farmacología , Vibrio cholerae/efectos de los fármacos , Antibacterianos/química , Proteínas Bacterianas/química , Proteínas Bacterianas/metabolismo , Deshidrogenasas de Carbohidratos/química , Pared Celular/metabolismo , Evaluación Preclínica de Medicamentos , Farmacorresistencia Bacteriana/efectos de los fármacos , Inhibidores Enzimáticos/química , Modelos Moleculares , Simulación del Acoplamiento Molecular , Simulación de Dinámica Molecular , Fitoquímicos/química , Relación Estructura-Actividad , Vibrio cholerae/metabolismo
4.
Steroids ; 93: 77-86, 2015 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-25447798

RESUMEN

Excess glucocorticoids promote visceral obesity, hyperlipidemia, and insulin resistance. The main regulator of intracellular glucocorticoid levels is 11ß-hydroxysteroid dehydrogenase type 1 (11ß-HSD1), which converts inactive glucocorticoids into bioactive forms such as cortisol in humans and corticosterone in rodents. Hexose-6-phosphate dehydrogenase (H6PD), which is colocalized with 11ß-HSD1 in the intralumen of the endoplasmic reticulum, supplies a crucial coenzyme, NADPH, for full reductase activity of 11ß-HSD1. Therefore, it is possible that inhibition of 11ß-HSD1 will become a considerable medical treatment for metabolic diseases including obesity and diabetes. Genistein, a soy isoflavone, has received attention for its therapeutic potential for obesity, diabetes, and cardiovascular disease, and has been proposed as a promising compound for the treatment of metabolic disorders. However, the mechanisms underlying the pleiotropic anti-obesity effects of genistein have not been fully clarified. Here, we demonstrate that genistein was able to inhibit 11ß-HSD1 and H6PD activities within 10 or 20min, in dose- and time-dependent manners. Inhibition of 11ß-HSD2 activity was not observed in rat kidney microsomes. The inhibition was not reversed by two estrogen receptor antagonists, tamoxifen and ICI182,780. A kinetic study revealed that genistein acted as a non-competitive inhibitor of 11ß-HSD1, and its apparent Km value for 11-dehydrocorticosterone was 0.5µM. Genistein also acted as a non-competitive inhibitor of H6PD, and its apparent Km values for G6P and NADP were 0.9 and 3.3µM, respectively. These results suggest that genistein may exert its inhibitory effect by interacting with these enzymes.


Asunto(s)
Genisteína/farmacología , Glucocorticoides/metabolismo , Fitoestrógenos/farmacología , 11-beta-Hidroxiesteroide Deshidrogenasa de Tipo 1/metabolismo , 11-beta-Hidroxiesteroide Deshidrogenasa de Tipo 2/metabolismo , Células 3T3-L1 , Animales , Deshidrogenasas de Carbohidratos/antagonistas & inhibidores , Deshidrogenasas de Carbohidratos/metabolismo , Corticosterona/metabolismo , Relación Dosis-Respuesta a Droga , Grasa Intraabdominal/efectos de los fármacos , Grasa Intraabdominal/enzimología , Riñón/efectos de los fármacos , Riñón/enzimología , Hígado/efectos de los fármacos , Hígado/enzimología , Masculino , Ratones , Ratas Wistar
5.
Int J Antimicrob Agents ; 44(5): 402-8, 2014 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-25176584

RESUMEN

The ability of cellobiose dehydrogenase (CDH) to produce hydrogen peroxide (H(2)O(2)) for antimicrobial and antibiofilm functionalisation of urinary catheters was investigated. A recombinantly produced CDH from Myriococcum thermophilum was shown to completely inhibit the growth of Escherichia coli and Staphylococcus aureus both in liquid and solid media when supplemented with either 0.8 mM or 2 mM cellobiose as substrate. Biofilm formation on silicone films was prevented by CDH when supplemented with 1mM cellobiose. The CDH/cellobiose system also successfully inhibited many common urinary catheter-colonising micro-organisms, including multidrug-resistant S. aureus, Staphylococcus epidermidis, Proteus mirabilis, Stenotrophomonas maltophilia, Acinetobacter baumannii and Pseudomonas aeruginosa. Interestingly, CDH was also able to produce H(2)O(2) during oxidation of extracellular polysaccharides (exPS) formed by micro-organisms in the absence of cellobiose. The H(2)O(2) production and consequently antimicrobial and antibiofilm activities on these exPS were enhanced by incorporation of glycoside hydrolases such as amylases. Hydrolysis of polysaccharides by these enzymes increases the number of terminal reducing sugars as substrates for CDH as well as destabilises the biofilm. Furthermore, CDH suspended in catheter lubricants killed bacteria in biofilms colonising catheters. Incorporation of the CDH/cellobiose system in the lubricant therefore makes it an easy strategy for preventing microbial colonisation of catheters.


Asunto(s)
Antiinfecciosos/metabolismo , Bacterias/efectos de los fármacos , Biopelículas/efectos de los fármacos , Deshidrogenasas de Carbohidratos/metabolismo , Catéteres/microbiología , Peróxido de Hidrógeno/metabolismo , Fenómenos Fisiológicos Bacterianos/efectos de los fármacos , Deshidrogenasas de Carbohidratos/genética , Concentración 50 Inhibidora , Pruebas de Sensibilidad Microbiana , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Sordariales/enzimología , Sordariales/genética
6.
J Biotechnol ; 162(2-3): 303-10, 2012 Dec 31.
Artículo en Inglés | MEDLINE | ID: mdl-23079077

RESUMEN

Saccharomyces cerevisiae cannot metabolize D-galacturonate, an important monomer of pectin. Use of S. cerevisiae for production of ethanol or other compounds of interest from pectin-rich feedstocks therefore requires introduction of a heterologous pathway for D-galacturonate metabolism. Bacterial D-galacturonate pathways involve D-galacturonate isomerase, D-tagaturonate reductase and three additional enzymes. This study focuses on functional expression of bacterial D-galacturonate isomerases in S. cerevisiae. After demonstrating high-level functional expression of a D-tagaturonate reductase gene (uxaB from Lactococcus lactis), the resulting yeast strain was used to screen for functional expression of six codon-optimized bacterial D-galacturonate isomerase (uxaC) genes. The L. lactis uxaC gene stood out, yielding a tenfold higher enzyme activity than the other uxaC genes. Efficient expression of D-galacturonate isomerase and D-tagaturonate reductase represents an important step toward metabolic engineering of S. cerevisiae for bioethanol production from D-galacturonate. To investigate in vivo activity of the first steps of the D-galacturonate pathway, the L. lactis uxaB and uxaC genes were expressed in a gpd1Δ gpd2Δ S. cerevisiae strain. Although D-tagaturonate reductase could, in principle, provide an alternative means for re-oxidizing cytosolic NADH, addition of D-galacturonate did not restore anaerobic growth, possibly due to absence of a functional D-altronate exporter in S. cerevisiae.


Asunto(s)
Ácidos Hexurónicos/metabolismo , Lactococcus lactis/enzimología , Pectinas/metabolismo , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/metabolismo , Bacterias/genética , Bacterias/metabolismo , Biocombustibles , Reactores Biológicos/microbiología , Deshidrogenasas de Carbohidratos/genética , Deshidrogenasas de Carbohidratos/metabolismo , Codón , Etanol/metabolismo , Fermentación , Isomerasas/genética , Isomerasas/metabolismo , Lactococcus lactis/genética , Ingeniería Metabólica/métodos , Redes y Vías Metabólicas , Filogenia
7.
Fungal Genet Biol ; 48(10): 990-7, 2011 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-21683149

RESUMEN

D-galacturonic acid is the most abundant component of pectin, one of the major polysaccharide constituents of plant cell walls. Galacturonic acid potentially is an important carbon source for microorganisms living on (decaying) plant material. A catabolic pathway was proposed in filamentous fungi, comprising three enzymatic steps, involving D-galacturonate reductase, L-galactonate dehydratase, and 2-keto-3-deoxy-L-galactonate aldolase. We describe the functional, biochemical and genetic characterization of the entire D-galacturonate-specific catabolic pathway in the plant pathogenic fungus Botrytis cinerea. The B. cinerea genome contains two non-homologous galacturonate reductase genes (Bcgar1 and Bcgar2), a galactonate dehydratase gene (Bclgd1), and a 2-keto-3-deoxy-L-galactonate aldolase gene (Bclga1). Their expression levels were highly induced in cultures containing GalA, pectate, or pectin as the sole carbon source. The four proteins were expressed in Escherichia coli and their enzymatic activity was characterized. Targeted gene replacement of all four genes in B. cinerea, either separately or in combinations, yielded mutants that were affected in growth on D-galacturonic acid, pectate, or pectin as the sole carbon source. In Aspergillus nidulans and A. niger, the first catabolic conversion only involves the Bcgar2 ortholog, while in Hypocrea jecorina, it only involves the Bcgar1 ortholog. In B. cinerea, however, BcGAR1 and BcGAR2 jointly contribute to the first step of the catabolic pathway, albeit to different extent. The virulence of all B. cinerea mutants in the D-galacturonic acid catabolic pathway on tomato leaves, apple fruit and bell peppers was unaltered.


Asunto(s)
Oxidorreductasas de Alcohol/metabolismo , Aldehído-Liasas/metabolismo , Botrytis/enzimología , Deshidrogenasas de Carbohidratos/metabolismo , Disacáridos/metabolismo , Redes y Vías Metabólicas/genética , Azúcares Ácidos/metabolismo , Oxidorreductasas de Alcohol/genética , Aldehído-Liasas/genética , Botrytis/genética , Capsicum/microbiología , Deshidrogenasas de Carbohidratos/genética , Disacáridos/genética , Malus/microbiología , Mutación , Oxidorreductasas de Alcohol Dependientes de NAD (+) y NADP (+) , Pectinas/metabolismo
8.
Int J Biochem Cell Biol ; 42(1): 157-66, 2010 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-19819344

RESUMEN

Maintenance of the reduced state of luminal pyridine nucleotides in the endoplasmic reticulum - an important pro-survival factor in the cell - is ensured by the concerted action of glucose-6-phosphate transporter and hexose-6-phosphate dehydrogenase. The mechanism by which the redox imbalance leads to cell death was investigated in HepG2 cells. The chemical inhibition of the glucose-6-phosphate transporter, the silencing of hexose-6-phosphate dehydrogenase and/or the glucose-6-phosphate transporter, or the oxidation of luminal NADPH by themselves did not cause a significant loss of cell viability. However, these treatments caused ER calcium store depletion. If these treatments were supplemented with the administration of a subliminal dose of the oxidizing agent menadione, endoplasmic reticulum vacuolization and a loss of viability were observed. Combined treatments resulted in the activation of ATF6 and procaspase-4, and in the induction of Grp78 and CHOP. In spite of the presence of UPR markers and proapoptotic signaling the effector caspases - caspase-3 and caspase-7 - were not active. On the other hand, an elevation of the autophagy marker LC3B was observed. Immunohistochemistry revealed a punctuated distribution of LC3B II, coinciding with the vacuolization of the endoplasmic reticulum. The results suggest that altered redox state of endoplasmic reticulum luminal pyridine nucleotides sensitizes the cell to autophagy.


Asunto(s)
Autofagia , Retículo Endoplásmico/patología , Nucleótidos/metabolismo , Estrés Oxidativo , Piridinas/metabolismo , Antiportadores/metabolismo , Autofagia/efectos de los fármacos , Biomarcadores/metabolismo , Calcio/metabolismo , Deshidrogenasas de Carbohidratos/metabolismo , Caspasas Iniciadoras/metabolismo , Retículo Endoplásmico/efectos de los fármacos , Chaperón BiP del Retículo Endoplásmico , Activación Enzimática/efectos de los fármacos , Silenciador del Gen , Células Hep G2 , Humanos , Proteínas Asociadas a Microtúbulos/metabolismo , Proteínas de Transporte de Monosacáridos/metabolismo , NADP/deficiencia , Oxidación-Reducción/efectos de los fármacos , Estrés Oxidativo/efectos de los fármacos , Compuestos de Sulfhidrilo/metabolismo , Vitamina K 3/farmacología
9.
J Biochem ; 137(3): 303-14, 2005 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-15809331

RESUMEN

L-Gulonate 3-dehydrogenase (GDH) catalyzes the NAD(+)-linked dehydrogenation of L-gulonate into dehydro-L-gulonate in the uronate cycle. In this study, we isolated the enzyme and its cDNA from rabbit liver, and found that the cDNA is identical to that for rabbit lens lambda-crystallin except for lacking a codon for Glu(309). The same cDNA species, but not the lambda-crystallin cDNA with the codon for Glu(309), was detected in the lens, which showed the highest GDH activity among rabbit tissues. In addition, recombinant human lambda-crystallin that lacks Glu(309) displays enzymatic properties similar to rabbit GDH. These data indicate that GDH is recruited as lambda-crystallin without gene duplication. An outstanding feature of GDH is modulation of its activity by low concentrations of P(i), which decreases the catalytic efficiency in a dose dependent manner. P(i) also protects the enzyme against both thermal and urea denaturation. Kinetic analysis suggests that P(i) binds to both the free enzyme and its NAD(H)-complex in the sequential ordered mechanism. Furthermore, we examined the roles of Asp(36), Ser(124), His(145), Glu(157 )and Asn(196) in the catalytic function of rabbit GDH by site-directed mutagenesis. The D36R mutation leads to a switch in favor of NADP(H) specificity, suggesting an important role of Asp(36) in the coenzyme specificity. The S124A mutation decreases the catalytic efficiency 500-fold, and the H145Q, N196Q and N195D mutations result in inactive enzyme forms, although the E157Q mutation produces no large kinetic alteration. Thus, Ser(124), His(145) and Asn(196) may be critical for the catalytic function of GDH.


Asunto(s)
Deshidrogenasas de Carbohidratos/química , Cristalinas/química , 3-Hidroxiacil-CoA Deshidrogenasas/genética , Secuencia de Aminoácidos , Animales , Deshidrogenasas de Carbohidratos/antagonistas & inhibidores , Deshidrogenasas de Carbohidratos/genética , Deshidrogenasas de Carbohidratos/metabolismo , Cristalinas/metabolismo , ADN Complementario , Difosfatos/farmacología , Estabilidad de Enzimas , Humanos , Concentración de Iones de Hidrógeno , Cinética , Hígado/enzimología , Malonatos/farmacología , Fosfatos/farmacología , Desnaturalización Proteica/efectos de los fármacos , Conejos , Proteínas Recombinantes/metabolismo , Alineación de Secuencia , Triazinas/farmacología
10.
Appl Microbiol Biotechnol ; 64(4): 525-30, 2004 May.
Artículo en Inglés | MEDLINE | ID: mdl-14689250

RESUMEN

A cDNA of a structural gene encoding pyranose 2-oxidase (P2O) from Trametes ochracea strain MB49 was cloned into Escherichia coli strain BL21(DE3) on a multicopy plasmid under the control of the trc promoter. Synthesis of P2O was studied in batch cultures in LB or M9-based mineral medium at 28 degrees C. While there was a low specific activity of P2O in LB medium, the enzyme was synthesised constitutively in mineral medium and represented 3% of the cell soluble protein (0.3 U mg(-1)). The effect of isopropyl beta-D-thiogalactoside on the expression of P2O was studied in mineral medium at 25 and 28 degrees C. The synthesis of P2O at 28 degrees C corresponded to 39% of the cell soluble protein but the major portion of P2O (93%) was in the form of non-active inclusion bodies (activity of P2O equalled 0.19 U mg(-1)). At 25 degrees C, the amount of P2O represented 14% of the cell soluble protein and the activity of P2O was 1.1 U mg(-1). The soluble enzyme represented 70% of the total amount of P2O.


Asunto(s)
Deshidrogenasas de Carbohidratos/genética , Deshidrogenasas de Carbohidratos/metabolismo , Polyporales/enzimología , Deshidrogenasas de Carbohidratos/aislamiento & purificación , Clonación Molecular , Citoplasma/enzimología , ADN Complementario/química , ADN Complementario/aislamiento & purificación , Escherichia coli/genética , Escherichia coli/crecimiento & desarrollo , Escherichia coli/metabolismo , Regulación Bacteriana de la Expresión Génica , Cuerpos de Inclusión/enzimología , Datos de Secuencia Molecular , Polyporales/genética , Regiones Promotoras Genéticas , ARN de Hongos/aislamiento & purificación , ARN de Hongos/metabolismo , Proteínas Recombinantes/biosíntesis , Proteínas Recombinantes/metabolismo , Análisis de Secuencia de ADN , Temperatura
11.
Bioorg Med Chem ; 11(7): 1583-92, 2003 Apr 03.
Artículo en Inglés | MEDLINE | ID: mdl-12628682

RESUMEN

We have developed a screening assay by thin-layer chromatography (TLC) to identify inhibitors for the bacterial essential enzymes MurA, -B, and -C. Libraries of compounds were synthesized using the mix-and-split combinatorial chemistry approach. Screening of the pooled compounds using the developed assay revealed the presence of many pools active in vitro. Pools of interest were tested for antibacterial activity. Individual molecules in the active pools were synthesized and retested with the TLC assay and with bacteria. We focused on the best five compounds for further analysis. They were tested for inhibition on each of the three enzymes separately, and showed no inhibition of MurA or MurB activity but were all inhibitors of MurC enzyme. This approach yielded interesting lead compounds for the development of novel antibacterial agents.


Asunto(s)
Bacterias/efectos de los fármacos , Pared Celular/efectos de los fármacos , Técnicas Químicas Combinatorias , Acetilación , Transferasas Alquil y Aril/antagonistas & inhibidores , Transferasas Alquil y Aril/aislamiento & purificación , Transferasas Alquil y Aril/metabolismo , Deshidrogenasas de Carbohidratos/antagonistas & inhibidores , Deshidrogenasas de Carbohidratos/aislamiento & purificación , Deshidrogenasas de Carbohidratos/metabolismo , Cromatografía en Capa Delgada , ADN Bacteriano/genética , Evaluación Preclínica de Medicamentos , Inhibidores Enzimáticos/síntesis química , Inhibidores Enzimáticos/farmacología , Escherichia coli/efectos de los fármacos , Hidroxilaminas/química , Indicadores y Reactivos , Espectroscopía de Resonancia Magnética , Espectrometría de Masas , Pruebas de Sensibilidad Microbiana , Péptido Sintasas/antagonistas & inhibidores , Péptido Sintasas/aislamiento & purificación , Péptido Sintasas/metabolismo , Propilaminas/química , Pseudomonas aeruginosa/efectos de los fármacos , Hidróxido de Sodio/química , Uridina Difosfato Ácido N-Acetilmurámico
12.
Antimicrob Agents Chemother ; 45(5): 1407-16, 2001 May.
Artículo en Inglés | MEDLINE | ID: mdl-11302803

RESUMEN

An L-rhamnosyl residue plays an essential structural role in the cell wall of Mycobacterium tuberculosis. Therefore, the four enzymes (RmlA to RmlD) that form dTDP-rhamnose from dTTP and glucose-1-phosphate are important targets for the development of new tuberculosis therapeutics. M. tuberculosis genes encoding RmlA, RmlC, and RmlD have been identified and expressed in Escherichia coli. It is shown here that genes for only one isotype each of RmlA to RmlD are present in the M. tuberculosis genome. The gene for RmlB is Rv3464. Rv3264c was shown to encode ManB, not a second isotype of RmlA. Using recombinant RmlB, -C, and -D enzymes, a microtiter plate assay was developed to screen for inhibitors of the formation of dTDP-rhamnose. The three enzymes were incubated with dTDP-glucose and NADPH to form dTDP-rhamnose and NADP(+) with a concomitant decrease in optical density at 340 nm (OD(340)). Inhibitor candidates were monitored for their ability to lower the rate of OD(340) change. To test the robustness and practicality of the assay, a chemical library of 8,000 compounds was screened. Eleven inhibitors active at 10 microM were identified; four of these showed activities against whole M. tuberculosis cells, with MICs from 128 to 16 microg/ml. A rhodanine structural motif was present in three of the enzyme inhibitors, and two of these showed activity against whole M. tuberculosis cells. The enzyme assay was used to screen 60 Peruvian plant extracts known to inhibit the growth of M. tuberculosis in culture; two extracts were active inhibitors in the enzyme assay at concentrations of less than 2 microg/ml.


Asunto(s)
Pared Celular/genética , Inhibidores Enzimáticos/farmacología , Glucosa/metabolismo , Mycobacterium tuberculosis/genética , Azúcares de Nucleósido Difosfato/metabolismo , Nucleótidos de Timina/metabolismo , Deshidrogenasas de Carbohidratos/antagonistas & inhibidores , Deshidrogenasas de Carbohidratos/genética , Deshidrogenasas de Carbohidratos/metabolismo , Carbohidrato Epimerasas/antagonistas & inhibidores , Carbohidrato Epimerasas/genética , Carbohidrato Epimerasas/metabolismo , Pared Celular/efectos de los fármacos , Pared Celular/metabolismo , Inhibidores Enzimáticos/química , Genoma Bacteriano , Glucosa/análogos & derivados , Hidroliasas/antagonistas & inhibidores , Hidroliasas/genética , Hidroliasas/metabolismo , Mycobacterium leprae/enzimología , Mycobacterium leprae/genética , Mycobacterium leprae/metabolismo , Mycobacterium tuberculosis/efectos de los fármacos , Mycobacterium tuberculosis/enzimología , Mycobacterium tuberculosis/metabolismo , Nucleotidiltransferasas/antagonistas & inhibidores , Nucleotidiltransferasas/genética , Nucleotidiltransferasas/metabolismo
13.
J Mol Cell Cardiol ; 29(6): 1605-13, 1997 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-9220346

RESUMEN

The alpha-glycerophosphate (alpha-GP) shuttle has been shown to play a role in reducing equivalent transfer in neonatal cardiac mitochondria. In adult heart mitochondria, alpha-GP shuttle activity is not detectable. The goals of the current study were to define the time course of the age-dependent decline in alpha-GP shuttle capacity and to identify the enzymatic step(s) of the alpha-GP shuttle which are regulated during development. Intact mitochondria were isolated from porcine hearts of various ages and assayed for alpha-GP shuttle capacity. By 5 weeks of age, alpha-GP shuttle capacity had decreased by nearly 39%. The cytosolic step of the shuttle, catalysed by cytosolic alpha-glycerophosphate dehydrogenase (c alpha-GPDH), demonstrated a significant increase between 0-2-day-old animals and adults. Partial cDNA clones of porcine c alpha-GPDH and mitochondrial alpha-glycerophosphate dehydrogenase (m alpha-GPDH) were prepared and used to quantitate expression of these genes. Using mRNA isolated from neonatal and adult porcine myocardium, expression of the c alpha-GPDH was unchanged, while expression of the m alpha-GPDH gene was present in neonatal but absent in adult myocardium. These results demonstrate a rapid postnatal decline in myocardial alpha-GP shuttle capacity which appears to be regulated by a decline in m alpha-GPDH gene expression.


Asunto(s)
Deshidrogenasas de Carbohidratos/genética , Glicerolfosfato Deshidrogenasa/genética , Glicerofosfatos/metabolismo , Miocardio/metabolismo , Factores de Edad , Animales , Animales Recién Nacidos , Secuencia de Bases , Northern Blotting , Deshidrogenasas de Carbohidratos/metabolismo , Citosol/enzimología , ADN Complementario , Regulación del Desarrollo de la Expresión Génica , Glicerol-3-Fosfato Deshidrogenasa (NAD+) , Glicerolfosfato Deshidrogenasa/metabolismo , Corazón/crecimiento & desarrollo , Mitocondrias Cardíacas/metabolismo , Datos de Secuencia Molecular , Homología de Secuencia de Ácido Nucleico , Porcinos
14.
Biochem J ; 323 ( Pt 2): 365-70, 1997 Apr 15.
Artículo en Inglés | MEDLINE | ID: mdl-9163325

RESUMEN

Rat liver d-3-phosphoglycerate dehydrogenase was purified to homogeneity and digested with trypsin, and the sequences of two peptides were determined. This sequence information was used to screen a rat hepatoma cDNA library. Among 11 positive clones, two covered the whole coding sequence. The deduced amino acid sequence (533 residues; Mr 56493) shared closer similarity with Bacillus subtilis 3-phosphoglycerate dehydrogenase than with the enzymes from Escherichia coli, Haemophilus influenzae and Saccharomyces cerevisiae. In all cases the similarity was most apparent in the substrate- and NAD+-binding domains, and low or insignificant in the C-terminal domain. A corresponding 2.1 kb mRNA was present in rat tissues including kidney, brain and testis, whatever the dietary status, and also in livers of animals fed a protein-free, carbohydrate-rich diet, but not in livers of control rats, suggesting transcriptional regulation. The full-length rat 3-phosphoglycerate dehydrogenase was expressed in E. coli and purified. The recombinant enzyme and the protein purified from liver displayed hyperbolic kinetics with respect to 3-phosphoglycerate, NAD+ and NADH, but substrate inhibition by 3-phosphohydroxypyruvate was observed; this inhibition was antagonized by salts. Similar properties were observed with a truncated form of 3-phosphoglycerate dehydrogenase lacking the C-terminal domain, indicating that the latter is not implicated in substrate inhibition or in salt effects. By contrast with the bacterial enzyme, rat 3-phosphoglycerate dehydrogenase did not catalyse the reduction of 2-oxoglutarate, indicating that this enzyme is not involved in human D- or L-hydroxyglutaric aciduria.


Asunto(s)
Deshidrogenasas de Carbohidratos/genética , Oxidorreductasas de Alcohol/metabolismo , Secuencia de Aminoácidos , Animales , Secuencia de Bases , Northern Blotting , Deshidrogenasas de Carbohidratos/química , Deshidrogenasas de Carbohidratos/metabolismo , Clonación Molecular , ADN Complementario/química , Humanos , Cinética , Hígado/enzimología , Datos de Secuencia Molecular , Fosfoglicerato-Deshidrogenasa , Reacción en Cadena de la Polimerasa , Cloruro de Potasio/farmacología , Piruvatos/farmacología , Ratas , Alineación de Secuencia , Especificidad por Sustrato
15.
Gene ; 172(2): 309-12, 1996 Jun 26.
Artículo en Inglés | MEDLINE | ID: mdl-8682323

RESUMEN

Mitochondrial glycerol phosphate dehydrogenase (mtGPD) is the rate-limiting enzyme in the glycerol phosphate shuttle, which is thought to play an important role in cells that require an active glycolytic pathway. Abnormalities in mtGPD have been proposed as a potential cause for non-insulin-dependent diabetes mellitus. To facilitate genetic studies, we have isolated genomic clones containing the coding regions of the human mtGPD-encoding gene (GPDM). The gene contains 17 exons and is estimated to span more than 80 kb. All splice junctions contain GT/AG consensus sequences. Introns interrupt the sequences encoding the leader peptide, the FAD-binding site, the calcium-binding regions, and a conserved central element postulated to play a role in glycerol phosphate binding. Fluorescence in situ hybridization was used to map this gene to chromosome 2, band q24.1. A retropseudogene was identified and mapped to chromosome 17.


Asunto(s)
Deshidrogenasas de Carbohidratos/genética , Mitocondrias/enzimología , Seudogenes , Secuencia de Bases , Deshidrogenasas de Carbohidratos/metabolismo , Mapeo Cromosómico , Cromosomas Humanos Par 2 , Clonación Molecular , ADN Complementario , Exones , Humanos , Intrones , Datos de Secuencia Molecular
16.
Int J Vitam Nutr Res ; 52(2): 169-75, 1982.
Artículo en Inglés | MEDLINE | ID: mdl-7129798

RESUMEN

The activities of enzymes associated with the synthesis and degradation of L-ascorbic acid were studied in hydrazine-treated rats supplemented with pyridoxine. The effects of hydrazine in vitro were also examined on these enzymes. The activity of liver D-glucuronoreductase was reduced in hydrazine-treated rats even after receiving pyridoxine in excess. But, the decreased activities of liver and kidney dehydroascorbatases in hydrazine-treated rats were reversed by pyridoxine supplementation. Hydrazine in vitro could not inhibit the activity of liver D-glucuronoreductase or L-gulonooxidase. The drug was also unable to inhibit in vitro the activity of liver and kidney dehydroascorbatases. Studies with dialyzed liver homogenates showed that the diminished activity of D-glucuronoreductase in the liver of hydrazine-treated rats was maintained even after dialyzing the tissue preparations. In contrast, the reduced activity of dehydroascorbatase in the liver of hydrazine-treated rats was abolished following dialysis of the liver preparations. It has been suggested that the diminished activity of liver D-glucuronoreductase after hydrazine treatment might arise from the reduced synthesis of enzyme protein, while the reduction in the activity of dehydroascorbatase following hydrazine treatment could be ascribed to depletion in vivo of pyridoxal phosphate and/or to the involvement of some dialyzable factors.


Asunto(s)
Ácido Ascórbico/metabolismo , Deshidrogenasas de Carbohidratos/metabolismo , Hidrolasas de Éster Carboxílico/metabolismo , Deshidroascorbatasa/metabolismo , Hidrazinas/farmacología , Deshidrogenasas del Alcohol de Azúcar/metabolismo , Animales , Deshidrogenasas de Carbohidratos/antagonistas & inhibidores , Deshidroascorbatasa/antagonistas & inhibidores , Riñón/enzimología , L-Gulonolactona Oxidasa , Hígado/enzimología , Masculino , Piridoxina/farmacología , Ratas
17.
Proc Soc Exp Biol Med ; 152(2): 175-7, 1976 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-180542

RESUMEN

The effect of cyclic 3',5'-AMP and supplemental dietary glycine upon de novo synthesis of serine metabolic enzymes in chick livers were examined. Chicks fed crystalline amino acid diets containing 2% glycine had approximately twofold the activity in liver for 3-phosphoglycerate dehydrogenase and phosphoserine phosphatase compared to liver tissue from chicks fed diets lacking in dietary glycine. Chicks subjected to daily intraperitoneal injections of cyclic 3',5'-AMP and fed diets containing no dietary glycine contained biosynthetic enzyme activity similar to glycine-fed chicks suggesting a correlation between glycine and cyclic AMP for serine enzyme induction. The elevated enzyme activity in liver of chicks fed dietary glycine or injected with cyclic AMP was inhibited when chicks were also injected with actinomycin D indicating de novo synthesis of 3-phosphoglycerate dehydrogenase and phosphoserine phosphatase. Dietary glycine or cyclic AMP, however, did not change serine dehydratase and glycerate dehydrogenase activities in chick liver.


Asunto(s)
Pollos/metabolismo , AMP Cíclico/farmacología , Serina/biosíntesis , Animales , Deshidrogenasas de Carbohidratos/metabolismo , Dactinomicina/farmacología , Glicina/metabolismo , Hígado/enzimología , Monoéster Fosfórico Hidrolasas/metabolismo
18.
Poult Sci ; 54(5): 1461-7, 1975 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-171639

RESUMEN

The effect of feeding low protein diets with and without 2% glycine or 2% L-serine to chicks upon the enzymes concerned in the matabolism of glycine and serine has been determined. D-3-phosphoglycerate dehydrogenase (EC 1.1.1.s), hosphoserine phosphatase (EC 3.1.3.3), and serine hydroxymethyltransferase (EC 2.1.2.1) activities were significantly increased in livers from chicks fed 75% protein diets as compared to liver enzyme activities from chicks fed either 24% chick starter, 2% or 25% protein diets. Phosphoserine phosphatase activity was significantly higher in kidney tissue of chicks fed 75% protein diets. Livers from chicks fed 25% protein diets had a higher activity for D-3-phosphoglycerate dehydrogenase and phosphoserine phosphatase than did those fed chick starter or 2% protein diets. D-3-phosphoglycerate dehydrogenase and phosphoserine phosphatase activities were higher in livers from chicks fed 2% protein, 2% protein + 2% glycine, and 2% protein + 2% L-serine diets when compared to those from chicks fed low protein diets with supplemental methionine or cysteine. Serine dehydratase (EC 4.2.1.13), glycerate dehydrogenase (EC 1.1.1.29) and hydroxypyruvate-P: L-glutamate transaminase activities remained constant in livers from chicks fed all experimental diets. The uric acid concentration was significantly increased in plasma from chicks fed the high protein diets which suggests that D-3-phosphoglycerate dehydrogenase, phosphoserine phosphatase and serine hydroxymethyltransferase activities were increased because of the high requirement for glycine in uric acid formation. The 75% protein diet provided three times as much glycine as the 25% protein diet which may have met the increased need for glycine for uric acid formation.


Asunto(s)
Oxidorreductasas de Alcohol/metabolismo , Deshidrogenasas de Carbohidratos/metabolismo , Pollos/metabolismo , Proteínas en la Dieta/metabolismo , Glicina Hidroximetiltransferasa/metabolismo , L-Serina Deshidratasa/metabolismo , Monoéster Fosfórico Hidrolasas/metabolismo , Transferasas/metabolismo , Animales , Riñón/enzimología , Hígado/enzimología , Compuestos Organofosforados , Serina , Ácido Úrico/sangre
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