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1.
J Sci Food Agric ; 101(12): 5154-5162, 2021 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-33608926

RESUMEN

BACKGROUND: Alginate lyases (EC 4.4.2.3/4.4.2.11) have been applied to produce alginate oligosaccharides, which have physiological advantages such as prebiotic and antidiabetic effects, and are of benefit in the food and pharmaceutical industries. Extracellular production of recombinant proteins in Escherichia coli presents advantages including simplified downstream processing and high productivity; however, the presence of certain signal peptides does not always ensure successful secretion, which make the extracellular production of alginate lyase in E. coli rarely reported but of great significance. RESULTS: A PL7 family alginate lyase, Aly01, with its native signal peptide from Vibrio natriegens SK42.001, was identified, characterized, and extracellularly expressed in E. coli. The enzyme specifically released trisaccharide from alginate and was strictly NaCl activated. Green fluorescent protein (GFP) was fused with the Aly01 signal peptide and successfully secreted in E. coli to expand the feasibility of using this signal peptide to produce other heterologous proteins extracellularly. Through a synergistic strategy of utilizing Terrific Broth (TB) medium supplemented with 120 mmol L-1 glycine and 10 mmol L-1 calcium, the lag phase of protein secretion was reduced to 3 h from 12 h; meanwhile calcium remedied glycine-related cell growth impairment, leading to further enhancement of overall enzyme productivity, reaching a maximum of 4.55 U mL-1 . CONCLUSION: A new salt-activated alginate lyase, Aly01, was identified and characterized. E. coli employed its signal peptide and extracellularly expressed both Aly01 and a GFP, which indicated the signal peptide of Aly01 could be a powerful tool for extracellular production of other heterologous proteins in E. coli. © 2021 Society of Chemical Industry.


Asunto(s)
Escherichia coli/genética , Espacio Extracelular/enzimología , Polisacárido Liasas/química , Polisacárido Liasas/genética , Cloruro de Sodio/metabolismo , Alginatos/metabolismo , Secuencia de Aminoácidos , Clonación Molecular , Activación Enzimática , Estabilidad de Enzimas , Escherichia coli/metabolismo , Espacio Extracelular/química , Espacio Extracelular/genética , Expresión Génica , Concentración de Iones de Hidrógeno , Polisacárido Liasas/metabolismo , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Alineación de Secuencia , Cloruro de Sodio/química , Especificidad por Sustrato
2.
ACS Chem Biol ; 10(12): 2716-24, 2015 Dec 18.
Artículo en Inglés | MEDLINE | ID: mdl-26398879

RESUMEN

Many therapeutically important enzymes are present in multiple cellular compartments, where they can carry out markedly different functions; thus, there is a need for pharmacological strategies to selectively manipulate distinct pools of target enzymes. Insulin-degrading enzyme (IDE) is a thiol-sensitive zinc-metallopeptidase that hydrolyzes diverse peptide substrates in both the cytosol and the extracellular space, but current genetic and pharmacological approaches are incapable of selectively inhibiting the protease in specific subcellular compartments. Here, we describe the discovery, characterization, and kinetics-based optimization of potent benzoisothiazolone-based inhibitors that, by virtue of a unique quasi-irreversible mode of inhibition, exclusively inhibit extracellular IDE. The mechanism of inhibition involves nucleophilic attack by a specific active-site thiol of the enzyme on the inhibitors, which bear an isothiazolone ring that undergoes irreversible ring opening with the formation of a disulfide bond. Notably, binding of the inhibitors is reversible under reducing conditions, thus restricting inhibition to IDE present in the extracellular space. The identified inhibitors are highly potent (IC50(app) = 63 nM), nontoxic at concentrations up to 100 µM, and appear to preferentially target a specific cysteine residue within IDE. These novel inhibitors represent powerful new tools for clarifying the physiological and pathophysiological roles of this poorly understood protease, and their unusual mechanism of action should be applicable to other therapeutic targets.


Asunto(s)
Citosol/química , Sistemas de Liberación de Medicamentos , Inhibidores Enzimáticos/química , Espacio Extracelular/enzimología , Insulisina/antagonistas & inhibidores , Compuestos de Sulfhidrilo/farmacología , Simulación por Computador , Evaluación Preclínica de Medicamentos , Inhibidores Enzimáticos/síntesis química , Inhibidores Enzimáticos/farmacología , Concentración 50 Inhibidora , Antagonistas de Insulina/farmacología , Insulisina/química , Modelos Biológicos , Estructura Molecular , Relación Estructura-Actividad , Compuestos de Sulfhidrilo/química
3.
J Plant Physiol ; 174: 16-25, 2015 Feb 01.
Artículo en Inglés | MEDLINE | ID: mdl-25462962

RESUMEN

Podalyria calyptrata is from fynbos soils with low availability of phosphorus (P) and nitrogen (N). We investigated the physiological basis for tolerance of low P supply in nodulated P. calyptrata and examined responses to increased supply of combined-N as Ca(NO3)2 and P. It was hypothesized that increasing supply of combined-N would stimulate P-acquisition mechanisms and enhance plant growth with high P supply. Biomass, leaf [N] and [P], organic acid and phosphatase root exudates, and phosphoenolpyruvate carboxylase (PEPC) and malate dehydrogenase (MDH) activity in nodules and roots were examined in two N×P experiments. Low P supply decreased leaf [P] and limited growth, decreasing the nodule:root ratio but increasing nodular PEPC and MDH activity for enhanced P-acquisition or P-utilization. At low P supply, a N-induced demand for P increased root exudation of citrate and PEPC and MDH activity in roots. Greater combined-N supply inhibited nodulation more at low P supply than at high P supply. With a P-induced demand for N the plants nodulated prolifically and increased combined-N supply did not enhance plant growth. The physiological basis for N2-fixing P. calyptrata tolerating growth at low P supply and responding to greater P supply is through balanced acquisition of P and N for plant demand.


Asunto(s)
Biomasa , Ácidos Carboxílicos/metabolismo , Fabaceae/metabolismo , Nitrógeno/farmacología , Fósforo/farmacología , Suelo , Espacio Extracelular/enzimología , Nitratos/farmacología , Fosfoproteínas Fosfatasas/metabolismo , Hojas de la Planta/efectos de los fármacos , Hojas de la Planta/metabolismo , Nódulos de las Raíces de las Plantas/efectos de los fármacos , Nódulos de las Raíces de las Plantas/metabolismo , Soluciones
4.
Plant Cell Physiol ; 56(1): 137-47, 2015 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-25378687

RESUMEN

4-Aminobutyrate (GABA) accumulates in apple fruit during controlled atmosphere storage. A potential source of GABA is the polyamine putrescine, which can be oxidized via copper-containing amine oxidase (CuAO), resulting in the production 4-aminobutanal/Δ(1)-pyrroline, with the consumption of O2 and release of H2O2 and ammonia. Five putative CuAO genes (MdAO genes) were cloned from apple (Malus domestica Borkh. cv. Empire) fruit, and the deduced amino acid sequences found to contain the active sites typically conserved in CuAOs. Genes encoding two of these enzymes, MdAO1 and MdAO2, were highly expressed in apple fruit and selected for further analysis. Amino acid sequence analysis predicted the presence of a C-terminal peroxisomal targeting signal 1 tripeptide in MdAO1 and an N-terminal signal peptide and N-glycosylation site in MdAO2. Transient expression of green fluorescent fusion proteins in Arabidopsis protoplasts or onion epidermal cells revealed a peroxisomal localization for MdAO1 and an extracellular localization for MdAO2. The enzymatic activities of purified recombinant MdAO1 and MdAO2 were measured continuously as H2O2 production using a coupled reaction. MdAO1 did not use monoamines or polyamines and displayed high catalytic efficiency for 1,3-diaminopropane, putrescine and cadaverine, whereas MdAO2 exclusively utilized aliphatic and aromatic monoamines, including 2-phenylethylamine and tyramine. Together, these results indicate that MdAO1 may contribute to GABA production via putrescine oxidation in the peroxisome of apple fruit under controlled atmosphere conditions. MdAO2 seems to be involved in deamination of 2-phenylethylamine, which is a step in the biosynthesis of 2-phenylethanol, a contributor to fruit flavor and flower fragrance.


Asunto(s)
Amina Oxidasa (conteniendo Cobre)/metabolismo , Monoaminas Biogénicas/metabolismo , Diaminas/metabolismo , Frutas/enzimología , Malus/enzimología , Amina Oxidasa (conteniendo Cobre)/genética , Secuencia de Aminoácidos , Arabidopsis/citología , Arabidopsis/enzimología , Arabidopsis/genética , Vías Biosintéticas , Espacio Extracelular/enzimología , Frutas/citología , Frutas/genética , Regulación de la Expresión Génica de las Plantas , Isoenzimas , Malus/genética , Datos de Secuencia Molecular , Cebollas/citología , Cebollas/enzimología , Cebollas/genética , Especificidad de Órganos , Oxidación-Reducción , Peroxisomas/enzimología , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Poliaminas/metabolismo , Alineación de Secuencia , Especificidad por Sustrato , Ácido gamma-Aminobutírico/metabolismo
5.
PLoS One ; 9(5): e98094, 2014.
Artículo en Inglés | MEDLINE | ID: mdl-24879417

RESUMEN

Saccharomyces cerevisiae plays a beneficial role in health because of its intrinsic nutritional value and bio-functional properties, which is why it is also used as a dietary supplement. However, the perception that S. cerevisiae is harmless has changed due to an increasing number of infections caused by this yeast. Given this scenario, we have tested whether viable strains contained in dietary supplements displayed virulence-associated phenotypic traits that could contribute to virulence in humans. We have also performed an in vivo study of the pathogenic potential of these strains using a murine model of systemic infection by intravenous inoculation. A total of 5 strains were isolated from 22 commercial products and tested. Results highlight one strain (D14) in terms of burden levels in brains and kidneys and ability to cause death, whereas the other two strains (D2 and D4) were considered of low virulence. Our results suggest a strong relationship between some of the virulence-associated phenotypic traits (ability to grow at 39°C and pseudohyphal growth) and the in vivo virulence in a mouse model of intravenous inoculation for isolates under study. The isolate displaying greatest virulence (D14) was evaluated in an experimental murine model of gastrointestinal infection with immunosuppression and disruption of mucosal integrity, which are common risk factors for developing infection in humans, and results were compared with an avirulent strain (D23). We showed that D14 was able to spread to mesenteric nodes and distant organs under these conditions. Given the widespread consumption of dietary supplements, we recommend only safe strains be used.


Asunto(s)
Suplementos Dietéticos/microbiología , Saccharomyces cerevisiae/aislamiento & purificación , Saccharomyces cerevisiae/patogenicidad , Adhesividad , Animales , Espacio Extracelular/enzimología , Femenino , Sistema de Señalización de MAP Quinasas , Ratones , Fenotipo , Poliestirenos/química , Poliuretanos/química , Saccharomyces cerevisiae/citología , Saccharomyces cerevisiae/crecimiento & desarrollo , Temperatura , Virulencia
6.
Bioresour Technol ; 149: 22-30, 2013 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-24084200

RESUMEN

A microbial consortium isolated from Shengli oilfield polluted sludge was capable of degrading naphthalene (NAP), phenanthrene (PHE), pyrene (PYR) and crude oil. It performed high biodegradation activity and emulsifiability for petroleum hydrocarbons, and was tolerant to 6.2mM Cu(2+), 2.7 mM Zn(2+) and 9.5mM Pb(2+). Biodegradation rates of NAP, PHE, PYR and crude oil were 53%, 21%, 32% and 44% in the presence of heavy metal (Cu(2+), 1.7 mM and Zn(2+), 2mM), respectively. Exploration on the adsorption and uptake of petroleum hydrocarbons by microbe suggested the stability of surface adsorption and cell uptake by live microbial consortium followed a decreasing order of NAP > PHE ≈ PYR > crude oil. The adsorption by heat-killed microbial consortium was constant for PAHs, while decreased for crude oil. Experiments on enzymatic degradation indicated that the metabolic efficiency of periplasmic, cytoplasmic and extracellular enzymes secreted by the microbial consortium for diverse substrates was different.


Asunto(s)
Hidrocarburos/metabolismo , Consorcios Microbianos , Petróleo/metabolismo , Adsorción/efectos de los fármacos , Bacterias/efectos de los fármacos , Bacterias/metabolismo , Biodegradación Ambiental/efectos de los fármacos , Espacio Extracelular/efectos de los fármacos , Espacio Extracelular/enzimología , Calor , Interacciones Hidrofóbicas e Hidrofílicas/efectos de los fármacos , Metales Pesados/toxicidad , Consorcios Microbianos/efectos de los fármacos , Pruebas de Sensibilidad Microbiana , Naftalenos/metabolismo , Periplasma/efectos de los fármacos , Periplasma/enzimología , Contaminación por Petróleo , Fenantrenos/metabolismo , Filogenia , Pirenos/metabolismo , Aguas del Alcantarillado/microbiología , Tensión Superficial/efectos de los fármacos
7.
Appl Biochem Biotechnol ; 171(1): 209-24, 2013 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-23824530

RESUMEN

Several recombinant derivatives of serine protease inhibitor called silk protease inhibitor 2 (SPI2), which is a silk component in Galleria mellonella (Lepidoptera, Insecta), were prepared in the expression vector Pichia pastoris. Both the native and the recombinant protease inhibitors were highly active against subtilisin and proteinase K. The synthetic SPI2 gene with Ala codon in the P1 position was fused with mGFP-5 to facilitate detection of the transgene and its protein product. A construct of the fusion gene with plant regulatory elements (promoter 35S and terminator OCS) was inserted into the binary vector pRD400. The final construct was introduced into Agrobacterium tumefaciens that was then used for genetic transformation of the potato variety Velox. The transgene expression was monitored with the aid of ELISA employing polyclonal antibody against natural SPI2. In vitro tests showed increased resistance to the late blight Phytophthora infestans in several transformed lines. No effect was seen on the growth, mortality, life span or reproduction of Spodoptera littoralis (Lepidoptera, Insecta) caterpillars, while feeding on transformed potato plants expressing the fusion protein, indicating that the transformed potatoes may be harmless to non-target organisms.


Asunto(s)
Ingeniería Genética/métodos , Proteínas de Insectos/genética , Lepidópteros/genética , Solanum tuberosum/genética , Animales , Resistencia a la Enfermedad/genética , Espacio Extracelular/enzimología , Expresión Génica , Ingeniería Genética/efectos adversos , Phytophthora infestans/fisiología , Pichia/genética , Enfermedades de las Plantas/parasitología , Plantas Modificadas Genéticamente , Solanum tuberosum/citología , Solanum tuberosum/inmunología , Solanum tuberosum/parasitología , Spodoptera , Subtilisina/antagonistas & inhibidores , Subtilisina/metabolismo , Transformación Genética
8.
BMC Plant Biol ; 12: 198, 2012 Nov 01.
Artículo en Inglés | MEDLINE | ID: mdl-23116303

RESUMEN

BACKGROUND: Studies reported unintended pleiotropic effects for a number of pesticidal proteins ectopically expressed in transgenic crops, but the nature and significance of such effects in planta remain poorly understood. Here we assessed the effects of corn cystatin II (CCII), a potent inhibitor of C1A cysteine (Cys) proteases considered for insect and pathogen control, on the leaf proteome and pathogen resistance status of potato lines constitutively expressing this protein. RESULTS: The leaf proteome of lines accumulating CCII at different levels was resolved by 2-dimensional gel electrophoresis and compared with the leaf proteome of a control (parental) line. Out of ca. 700 proteins monitored on 2-D gels, 23 were significantly up- or downregulated in CCII-expressing leaves, including 14 proteins detected de novo or up-regulated by more than five-fold compared to the control. Most up-regulated proteins were abiotic or biotic stress-responsive proteins, including different secretory peroxidases, wound inducible protease inhibitors and pathogenesis-related proteins. Accordingly, infection of leaf tissues by the fungal necrotroph Botryris cinerea was prevented in CCII-expressing plants, despite a null impact of CCII on growth of this pathogen and the absence of extracellular Cys protease targets for the inhibitor. CONCLUSIONS: These data point to the onset of pleiotropic effects altering the leaf proteome in transgenic plants expressing recombinant protease inhibitors. They also show the potential of these proteins as ectopic modulators of stress responses in planta, useful to engineer biotic or abiotic stress tolerance in crop plants of economic significance.


Asunto(s)
Cistatinas/metabolismo , Grano Comestible/metabolismo , Proteínas de Plantas/metabolismo , Solanum tuberosum/genética , Botrytis/efectos de los fármacos , Botrytis/enzimología , Botrytis/crecimiento & desarrollo , Cromatografía Liquida , Regulación hacia Abajo/efectos de los fármacos , Regulación hacia Abajo/genética , Electroforesis en Gel Bidimensional , Espacio Extracelular/efectos de los fármacos , Espacio Extracelular/enzimología , Regulación de la Expresión Génica de las Plantas/efectos de los fármacos , Pleiotropía Genética/efectos de los fármacos , Espectrometría de Masas , Hojas de la Planta/efectos de los fármacos , Hojas de la Planta/metabolismo , Hojas de la Planta/microbiología , Proteínas de Plantas/genética , Plantas Modificadas Genéticamente , Inhibidores de Proteasas/farmacología , Proteoma/metabolismo , Solanum tuberosum/efectos de los fármacos , Solanum tuberosum/microbiología , Estrés Fisiológico/efectos de los fármacos , Estrés Fisiológico/genética , Regulación hacia Arriba/efectos de los fármacos , Regulación hacia Arriba/genética
9.
Fungal Genet Biol ; 49(11): 922-32, 2012 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-23022488

RESUMEN

The hemibiotrophic basidiomycete fungus Moniliophthora perniciosa, the causal agent of Witches' broom disease (WBD) in cacao, is able to grow on methanol as the sole carbon source. In plants, one of the main sources of methanol is the pectin present in the structure of cell walls. Pectin is composed of highly methylesterified chains of galacturonic acid. The hydrolysis between the methyl radicals and galacturonic acid in esterified pectin, mediated by a pectin methylesterase (PME), releases methanol, which may be decomposed by a methanol oxidase (MOX). The analysis of the M. pernciosa genome revealed putative mox and pme genes. Real-time quantitative RT-PCR performed with RNA from mycelia grown in the presence of methanol or pectin as the sole carbon source and with RNA from infected cacao seedlings in different stages of the progression of WBD indicate that the two genes are coregulated, suggesting that the fungus may be metabolizing the methanol released from pectin. Moreover, immunolocalization of homogalacturonan, the main pectic domain that constitutes the primary cell wall matrix, shows a reduction in the level of pectin methyl esterification in infected cacao seedlings. Although MOX has been classically classified as a peroxisomal enzyme, M. perniciosa presents an extracellular methanol oxidase. Its activity was detected in the fungus culture supernatants, and mass spectrometry analysis indicated the presence of this enzyme in the fungus secretome. Because M. pernciosa possesses all genes classically related to methanol metabolism, we propose a peroxisome-independent model for the utilization of methanol by this fungus, which begins with the extracellular oxidation of methanol derived from the demethylation of pectin and finishes in the cytosol.


Asunto(s)
Agaricales/enzimología , Oxidorreductasas de Alcohol/metabolismo , Cacao/microbiología , Espacio Extracelular/enzimología , Proteínas Fúngicas/metabolismo , Enfermedades de las Plantas/microbiología , Agaricales/genética , Agaricales/crecimiento & desarrollo , Agaricales/metabolismo , Oxidorreductasas de Alcohol/química , Oxidorreductasas de Alcohol/genética , Secuencia de Aminoácidos , Espacio Extracelular/genética , Proteínas Fúngicas/química , Proteínas Fúngicas/genética , Regulación Fúngica de la Expresión Génica , Metanol/metabolismo , Datos de Secuencia Molecular , Pectinas/metabolismo , Transporte de Proteínas , Alineación de Secuencia
10.
Appl Biochem Biotechnol ; 168(8): 2376-86, 2012 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-23079890

RESUMEN

In this study, an easily detectable method was employed for screening laccase-producing microorganisms by using 2,2'-azino-bis(3-ethylbenzothiazoline-6-sulfonate) as laccase secretion indicator. A novel laccase-producing strain was isolated and identified as Shiraia bambusicola Henn. strain GZ11K2 according to the morphological characteristics and the comparison of internal transcribed spacer ribosomal DNA gene sequences. In further investigation, the production of laccase by S. bambusicola GZ11K2 was greatly enhanced by the nontoxic inducers of copper sulfate and rhodamine B. Copper and rhodamine B were added into the cultivation medium at 24 and 12 h, respectively, and the maximum laccase production was obtained. Under the induction of 2.0 mM copper sulfate and 35 µM rhodamine B, an increment of about 80 times of laccase activity compared with that in the inducer-free medium and about 20 times compared with that in the single copper-supplemented medium was observed. Compared with other species, S. bambusicola GZ11K2 exhibits better laccase-producing characteristics with an activity of 16,400 U/L after 108 h, suggesting its potential ability for industrial application.


Asunto(s)
Ascomicetos/metabolismo , Lacasa/biosíntesis , Ascomicetos/citología , Ascomicetos/efectos de los fármacos , Ascomicetos/crecimiento & desarrollo , Benzotiazoles/farmacología , Cobre/farmacología , Relación Dosis-Respuesta a Droga , Sinergismo Farmacológico , Espacio Extracelular/efectos de los fármacos , Espacio Extracelular/enzimología , Rodaminas/farmacología , Ácidos Sulfónicos/farmacología , Factores de Tiempo
11.
Appl Biochem Biotechnol ; 166(5): 1275-90, 2012 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-22238011

RESUMEN

Cutinases are versatile carboxylic ester hydrolases with great potential in many biocatalytic processes, including biodiesel production. Genome sequence analysis of the model organism Aspergillus nidulans reveals four genes encoding putative cutinases. In this work, we purified and identified for the first time a cutinase (ANCUT2) produced by A. nidulans. ANCUT2 is a 29-kDa protein which consists of 255 amino acid residues. Comparison of the amino acid sequence of ANCUT2 with other microbial cutinase sequences revealed a high degree of homology with other fungal cutinases as well as new features, which include a serine-rich region and conserved cysteines. Cutinase production with different lipidic and carbon sources was also explored. Enzyme activity was induced by olive oil and some triacylglycerides and fatty acids, whereas it was repressed by glucose (1%) and other sugars. In some conditions, a 22-kDa post-translational processing product was also detected. The cutinase nature of the enzyme was confirmed after degradation of apple cutin.


Asunto(s)
Aspergillus nidulans/citología , Hidrolasas de Éster Carboxílico/biosíntesis , Espacio Extracelular/metabolismo , Aceites de Plantas/farmacología , Secuencia de Aminoácidos , Aspergillus nidulans/efectos de los fármacos , Aspergillus nidulans/genética , Aspergillus nidulans/crecimiento & desarrollo , Carbono/farmacología , Hidrolasas de Éster Carboxílico/química , Hidrolasas de Éster Carboxílico/aislamiento & purificación , Hidrolasas de Éster Carboxílico/metabolismo , Medios de Cultivo , Evolución Molecular , Espacio Extracelular/efectos de los fármacos , Espacio Extracelular/enzimología , Ácidos Grasos/farmacología , Datos de Secuencia Molecular , Peso Molecular , Nitrógeno/farmacología , Aceite de Oliva , Filogenia , Procesamiento Proteico-Postraduccional/efectos de los fármacos , Triglicéridos/farmacología
12.
Bioresour Technol ; 102(22): 10663-70, 2011 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-21967715

RESUMEN

The production, purification and characterization of cold active lipases by Yarrowia lipolytica NCIM 3639 is described. The study presents a new finding of production of cell bound and extracellular lipase activities depending upon the substrate used for growth. The strain produced cell bound and extracellular lipase activity when grown on olive oil and Tween 80, respectively. The organism grew profusely at 20 °C and at initial pH of 5.5, producing maximum extracellular lipase. The purified lipase has a molecular mass of 400 kDa having 20 subunits forming a multimeric native protein. Further the enzyme displayed an optimum pH of 5.0 and optimum temperature of 25 °C. Peptide mass finger printing reveled that some peptides showed homologues sequence (42%) to Yarrowia lipolytica LIP8p. The studies on hydrolysis of racemic lavandulyl acetate revealed that extracellular and cell bound lipases show preference over the opposite antipodes of irregular monoterpene, lavandulyl acetate.


Asunto(s)
Frío , Lipasa/biosíntesis , Lipasa/aislamiento & purificación , Yarrowia/enzimología , Acetatos/metabolismo , Secuencia de Aminoácidos , Cromatografía Liquida , Electroforesis en Gel de Poliacrilamida , Inducción Enzimática/efectos de los fármacos , Estabilidad de Enzimas/efectos de los fármacos , Espacio Extracelular/efectos de los fármacos , Espacio Extracelular/enzimología , Concentración de Iones de Hidrógeno/efectos de los fármacos , Hidrólisis/efectos de los fármacos , Iones , Cinética , Lipasa/química , Espectrometría de Masas , Metales/farmacología , Datos de Secuencia Molecular , Peso Molecular , Monoterpenos/metabolismo , Nitrofenoles/metabolismo , Aceite de Oliva , Compuestos Organofosforados/metabolismo , Mapeo Peptídico , Aceites de Plantas/química , Polisorbatos/farmacología , Especificidad por Sustrato/efectos de los fármacos , Temperatura , Factores de Tiempo , Yarrowia/citología , Yarrowia/efectos de los fármacos , Yarrowia/crecimiento & desarrollo
13.
Appl Environ Microbiol ; 77(15): 5342-51, 2011 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-21705528

RESUMEN

The dissimilatory iron-reducing bacterium Shewanella oneidensis MR-1 is capable of using extracellular DNA (eDNA) as the sole source of carbon, phosphorus, and nitrogen. In addition, we recently demonstrated that S. oneidensis MR-1 requires eDNA as a structural component during all stages of biofilm formation. In this study, we characterize the roles of two Shewanella extracellular endonucleases, ExeS and ExeM. While ExeS is likely secreted into the medium, ExeM is predicted to remain associated with the cell envelope. Both exeM and exeS are highly expressed under phosphate-limited conditions. Mutants lacking exeS and/or exeM exhibit decreased eDNA degradation; however, the capability of S. oneidensis MR-1 to use DNA as the sole source of phosphorus is only affected in mutants lacking exeM. Neither of the two endonucleases alleviates toxic effects of increased eDNA concentrations. The deletion of exeM and/or exeS significantly affects biofilm formation of S. oneidensis MR-1 under static conditions, and expression of exeM and exeS drastically increases during static biofilm formation. Under hydrodynamic conditions, a deletion of exeM leads to altered biofilms that consist of densely packed structures which are covered by a thick layer of eDNA. Based on these results, we hypothesize that a major role of ExeS and, in particular, ExeM of S. oneidensis MR-1, is to degrade eDNA as a matrix component during biofilm formation to improve nutrient supply and to enable detachment.


Asunto(s)
Biopelículas/crecimiento & desarrollo , Endonucleasas/metabolismo , Shewanella/enzimología , Carbono/metabolismo , Membrana Celular/enzimología , ADN/metabolismo , Endonucleasas/genética , Espacio Extracelular/enzimología , Proteínas de la Membrana/genética , Proteínas de la Membrana/metabolismo , Nitrógeno/metabolismo , Fósforo/metabolismo , Eliminación de Secuencia , Shewanella/genética
14.
Bioresour Technol ; 102(2): 982-9, 2011 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-20934327

RESUMEN

The yeast population dynamics in olive wastewaters (OMW), sampled in five mills from Salento (Apulia, Southern Italy), were investigated. Three hundred yeasts were isolated in five industrial mills and identified by molecular analysis. Strains belonging to Geotrichum, Saccharomyces, Pichia, Rhodotorula and Candida were detected. Five G. candidum strains were able to grow in OMW as the sole carbon source and to reduce phenolics, chemical oxygen demand (COD) and antimicrobial compounds. One G. candidum isolate was selected for whole-cell immobilization in calcium alginate gel. The COD and phenolic reduction obtained with immobilized cells showed a 2.2- and 2-fold increase compared to the removal obtained with free cells, respectively. The immobilization system enhanced yeast oxidative activity by avoiding the presence of microbial protease in treated OMW. To our knowledge, this is the first report on G. candidum whole-cell immobilization for OMW bioremediation.


Asunto(s)
Residuos Industriales/análisis , Aceites de Plantas/química , Eliminación de Residuos Líquidos , Purificación del Agua/métodos , Levaduras/citología , Levaduras/metabolismo , Antibacterianos/farmacología , Bacillus megaterium/efectos de los fármacos , Biodegradación Ambiental/efectos de los fármacos , Análisis de la Demanda Biológica de Oxígeno , Biomasa , Células Inmovilizadas/citología , Células Inmovilizadas/metabolismo , Espacio Extracelular/efectos de los fármacos , Espacio Extracelular/enzimología , Datos de Secuencia Molecular , Aceite de Oliva , Oxidación-Reducción/efectos de los fármacos , Fenoles/aislamiento & purificación , Factores de Tiempo , Levaduras/efectos de los fármacos , Levaduras/aislamiento & purificación
15.
Appl Biochem Biotechnol ; 160(5): 1496-507, 2010 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-19484410

RESUMEN

An extracellular polygalacturonase (PG) produced from Paecilomyces variotii was purified to homogeneity through two chromatography steps using DEAE-Fractogel and Sephadex G-100. The molecular weight of P. variotii PG was 77,300 Da by gel filtration and SDS-PAGE. PG had isoelectric point of 4.37 and optimum pH 4.0. PG was very stable from pH 3.0 to 6.0. The extent of hydrolysis of different pectins by the purified enzyme was decreased with an increase in the degree of esterification. PG had no activity toward non-pectic polysaccharides. The apparent K(m) and V(max) values for hydrolyzing sodium polypectate were 1.84 mg/mL and 432 micromol/min/mg, respectively. PG was found to have temperature optimum at 65 degrees Celsius and was totally stable at 45 degrees Celsius for 90 min. Half-life at 55 degrees Celsius was 50.6 min. Almost all the examined metal cations showed partial inhibitory effects under enzymatic activity, except for Na(+1), K(+1), and Co(+2) (1 mM) and Cu(+2) (1 and 10 mM).


Asunto(s)
Técnicas de Cultivo de Célula/métodos , Espacio Extracelular/enzimología , Paecilomyces/enzimología , Poligalacturonasa/aislamiento & purificación , Poligalacturonasa/metabolismo , Cationes , Cromatografía en Capa Delgada , Electroforesis en Gel de Poliacrilamida , Estabilidad de Enzimas/efectos de los fármacos , Espacio Extracelular/efectos de los fármacos , Concentración de Iones de Hidrógeno/efectos de los fármacos , Hidrólisis/efectos de los fármacos , Punto Isoeléctrico , Cinética , Metales/farmacología , Peso Molecular , Paecilomyces/efectos de los fármacos , Pectinas/metabolismo , Especificidad por Sustrato/efectos de los fármacos , Temperatura
16.
Plant Cell Physiol ; 51(1): 123-31, 2010 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-19996150

RESUMEN

Cutinase is an esterase that degrades the polyester cutin, a major component of the plant cuticle. Although cutinase activity has been detected in pollen, the genes encoding this enzyme have not been identified. Here, we report the identification and characterization of Arabidopsis CDEF1 (cuticle destructing factor 1), a novel candidate gene encoding cutinase. CDEF1 encodes a member of the GDSL lipase/esterase family of proteins, although fungal and bacterial cutinases belong to the alpha/beta hydrolase superfamily which is different from the GDSL lipase/esterase family. According to the AtGenExpress microarray data, CDEF1 is predominantly expressed in pollen. The ectopic expression of CDEF1 driven by the 35S promoter caused fusion of organs, including leaves, stems and flowers, and increased surface permeability. Ultrastructural analysis revealed that the cuticle of the transgenic plants was often disrupted and became discontinuous. Subcellular analysis with green fluorescent protein (GFP)-tagged CDEF1 showed that the protein is secreted to the extracellular space in leaves. The recombinant CDEF1 protein has esterase activity. These results are consistent with cutinase being secreted from cells and directly degrading the polyester in the cuticle. CDEF1 promoter activity was detected in mature pollen and pollen tubes, suggesting that CDEF1 is involved in the penetration of the stigma by pollen tubes. Additionally, we found CDEF1 expression at the zone of lateral root emergence, which suggests that CDEF1 degrades cell wall components to facilitate the emergence of the lateral roots. Our findings suggest that CDEF1 is a candidate gene for the unidentified plant cutinase.


Asunto(s)
Arabidopsis/enzimología , Arabidopsis/genética , Hidrolasas de Éster Carboxílico/genética , Hidrolasas de Éster Carboxílico/metabolismo , Esterasas/genética , Esterasas/metabolismo , Arabidopsis/crecimiento & desarrollo , Hidrolasas de Éster Carboxílico/aislamiento & purificación , Pared Celular/genética , Pared Celular/metabolismo , Esterasas/aislamiento & purificación , Espacio Extracelular/enzimología , Regulación de la Expresión Génica de las Plantas/genética , Proteínas Fluorescentes Verdes , Microscopía Electrónica de Transmisión , Mutación/genética , Análisis de Secuencia por Matrices de Oligonucleótidos , Epidermis de la Planta/enzimología , Epidermis de la Planta/genética , Epidermis de la Planta/crecimiento & desarrollo , Hojas de la Planta/enzimología , Hojas de la Planta/genética , Hojas de la Planta/crecimiento & desarrollo , Raíces de Plantas/enzimología , Raíces de Plantas/genética , Raíces de Plantas/crecimiento & desarrollo , Plantas Modificadas Genéticamente/enzimología , Plantas Modificadas Genéticamente/genética , Plantas Modificadas Genéticamente/crecimiento & desarrollo , Polen/enzimología , Polen/genética , Poliésteres/metabolismo , Regiones Promotoras Genéticas/genética
17.
Appl Biochem Biotechnol ; 160(5): 1267-76, 2010 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-19333564

RESUMEN

Phytase of the thermophilic mold Sporotrichum thermophile Apinis hydrolyzed and liberated inorganic phosphate from Ca(+2), Mg(+2), and Co(+2) phytates more efficiently than those of Al(3+), Fe(2+), Fe(3+), and Zn(2+). The hydrolysis rate was higher at 60 degrees C as compared to 26 degrees Celsius. Among all the organic acids tested, citrate was more effective in enhancing solubilization of insoluble phytate salts by phytase than others. The dry weight and inorganic phosphate contents of the wheat plants were high when supplemented with phytase or fungal spores. The plants provided with 5 mg phytate per plant exhibited enhanced growth and inorganic phosphate. With increase in the dosage of phytase, there was increase in growth and inorganic phosphate of plants, the highest being at 20 U per plant. The compost made employing the combined native microflora of the wheat straw and S. thermophile promoted growth of the plants. The plant-growth-promoting effect was also higher with the compost made using S. thermophile than that from only the native microflora.


Asunto(s)
6-Fitasa/farmacología , Espacio Extracelular/enzimología , Sporothrix/enzimología , Temperatura , Triticum/efectos de los fármacos , Triticum/crecimiento & desarrollo , Biomasa , Ácidos Carboxílicos/farmacología , Hidrólisis/efectos de los fármacos , Ácido Fítico/metabolismo , Plantones/efectos de los fármacos , Plantones/crecimiento & desarrollo , Suelo , Solubilidad/efectos de los fármacos
18.
J Med Chem ; 52(9): 2846-53, 2009 May 14.
Artículo en Inglés | MEDLINE | ID: mdl-19354253

RESUMEN

Trypanosoma cruzi (TC) causes Chagas disease, which in its chronic stage remains incurable. We have shown recently that specific inhibition of TC sterol 14alpha-demethylase (TCCYP51) with imidazole derivatives is effective in killing both extracellular and intracellular human stages of TC. An alternative set of TCCYP51 inhibitors has been identified using optical high throughput screening followed by web-database search for similar structures. The best TCCYP51 inhibitor from this search was found to have structural similarity to a class of cyclooxygenase-2-selective inhibitors, the indomethacin-amides. A number of indomethacin-amides were found to bind to TCCYP51, inhibit its activity in vitro, and produce strong antiparasitic effects in the cultured TC cells. Analysis of TC sterol composition indicated that the mode of action of the compounds is by inhibition of sterol biosynthesis in the parasite.


Asunto(s)
Amidas/química , Amidas/farmacología , Inhibidores Enzimáticos del Citocromo P-450 , Inhibidores Enzimáticos/química , Inhibidores Enzimáticos/farmacología , Indometacina/análogos & derivados , Trypanosoma cruzi/enzimología , Animales , Antiparasitarios/química , Antiparasitarios/farmacología , Evaluación Preclínica de Medicamentos , Espacio Extracelular/efectos de los fármacos , Espacio Extracelular/enzimología , Espacio Intracelular/efectos de los fármacos , Espacio Intracelular/enzimología , Ligandos , Esterol 14-Desmetilasa , Esteroles/química , Esteroles/metabolismo , Trypanosoma cruzi/citología , Trypanosoma cruzi/efectos de los fármacos
19.
Bioresour Technol ; 99(17): 8088-94, 2008 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-18445524

RESUMEN

An extracellular pectate lyase (EC 4.2.2.2) was purified from the culture filtrate of a newly isolated Bacillus pumilus DKS1 grown in pectin containing medium. Using ion-exchange and gel filtration chromatography, this enzyme was purified and found to have a molecular weight of around 35kDa. The purified enzyme exhibited maximal activity at a temperature of 75 degrees C and pH 8.5. The presence of 1mM calcium and manganese enhanced pectate lyase activity and was strongly inhibited by zinc, nickel and EDTA. The thermal inactivation studies revealed an entropy-enthalpy compensation pattern below a critical temperature. The alkaliphilicity and high thermostability of this pectate lyase may have potential implications in fibre degumming.


Asunto(s)
Bacillus/enzimología , Bacillus/aislamiento & purificación , Espacio Extracelular/enzimología , Polisacárido Liasas/química , Temperatura , Bacillus/efectos de los fármacos , Sitios de Unión , Dicroismo Circular , Electroforesis en Gel de Poliacrilamida , Entropía , Activación Enzimática/efectos de los fármacos , Espacio Extracelular/efectos de los fármacos , Concentración de Iones de Hidrógeno , Cinética , Metales/farmacología , Datos de Secuencia Molecular , Pectinas/metabolismo , Polisacárido Liasas/biosíntesis , Polisacárido Liasas/aislamiento & purificación , Estructura Secundaria de Proteína , Termodinámica , Triptófano
20.
Planta ; 228(2): 281-92, 2008 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-18425534

RESUMEN

Hydrogen peroxide and other reactive oxygen species are important signaling molecules in diverse physiological processes. Previously, we discovered superoxide dismutase (SOD) activity in extracellular protein preparations from fiber-bearing cotton (Gossypium hirsutum L.) seeds. We show here, based on immunoreactivity, that the enzyme is a Cu/Zn-SOD (CSD). Immunogold localization shows that CSD localizes to secondary cell walls of developing cotton fibers. Five cotton CSD cDNAs were cloned from cotton fiber and classified into three subfamilies (Group 1: GhCSD1; Group 2: GhCSD2a and GhCSD2b; Group 3: GhCSD3 and GhCSD3s). Members of Group 1 and 2 are expressed throughout fiber development, but predominant during the elongation stage. Group 3 CSDs are also expressed throughout fiber development, but transiently increase in abundance at the transition period between cell elongation and secondary cell wall synthesis. Each of the three GhCSDs also has distinct patterns of expression in tissues other than fiber. Overexpression of cotton CSDs fused to green fluorescent protein in transgenic Arabidopsis demonstrated that GhCSD1 localizes to the cytosol, GhCSD2a localizes to plastids, and GhCSD3 is translocated to the cell wall. Subcellular fractionation of proteins from transgenic Arabidopsis seedlings confirmed that only c-myc epitope-tagged GhCSD3 co-purifies with cell wall proteins. Extracellular CSDs have been suggested to be involved in lignin formation in secondary cell walls of other plants. Since cotton fibers are not lignified, we suggest that extracellular CSDs may be involved in other plant cell wall growth and development processes.


Asunto(s)
Pared Celular/enzimología , Espacio Extracelular/enzimología , Gossypium/enzimología , Superóxido Dismutasa/metabolismo , Secuencia de Aminoácidos , Fibra de Algodón , ADN Complementario/química , Regulación del Desarrollo de la Expresión Génica , Regulación de la Expresión Génica de las Plantas , Gossypium/crecimiento & desarrollo , Immunoblotting , Inmunohistoquímica , Datos de Secuencia Molecular , Semillas/enzimología , Semillas/crecimiento & desarrollo
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