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1.
Mol Plant Pathol ; 18(1): 110-124, 2017 01.
Artículo en Inglés | MEDLINE | ID: mdl-27503598

RESUMEN

Phytophthora infestans is a devastating pathogen in agricultural systems. Recently, an RNA silencing suppressor (PSR2, 'Phytophthora suppressor of RNA silencing 2') has been described in P. infestans. PSR2 has been shown to increase the virulence of Phytophthora pathogens on their hosts. This gene is one of the few effectors present in many economically important Phytophthora species. In this study, we investigated: (i) the evolutionary history of PSR2 within and between species of Phytophthora; and (ii) the interaction between sequence variation, gene expression and virulence. In P. infestans, the highest PiPSR2 expression was correlated with decreased symptom expression. The highest gene expression was observed in the biotrophic phase of the pathogen, suggesting that PSR2 is important during early infection. Protein sequence conservation was negatively correlated with host range, suggesting host range as a driver of PSR2 evolution. Within species, we detected elevated amino acid variation, as observed for other effectors; however, the frequency spectrum of the mutations was inconsistent with strong balancing selection. This evolutionary pattern may be related to the conservation of the host target(s) of PSR2 and the absence of known corresponding R genes. In summary, our study indicates that PSR2 is a conserved effector that acts as a master switch to modify plant gene regulation early during infection for the pathogen's benefit. The conservation of PSR2 and its important role in virulence make it a promising target for pathogen management.


Asunto(s)
Perfilación de la Expresión Génica , Regulación de la Expresión Génica , Genes Supresores , Interacciones Huésped-Patógeno/genética , Phytophthora infestans/genética , Interferencia de ARN , Aminoácidos/genética , Especificidad del Huésped , Enfermedades de las Plantas/microbiología , Polimorfismo Genético , Estructura Secundaria de Proteína , Solanum/microbiología , Especificidad de la Especie
2.
PLoS One ; 8(6): e66046, 2013.
Artículo en Inglés | MEDLINE | ID: mdl-23799071

RESUMEN

Post-transcriptional gene silencing is commonly observed in polyploid species and often poses a major limitation to plant improvement via biotechnology. Five plant viral suppressors of RNA silencing were evaluated for their ability to counteract gene silencing and enhance the expression of the Enhanced Yellow Fluorescent Protein (EYFP) or the ß-glucuronidase (GUS) reporter gene in sugarcane, a major sugar and biomass producing polyploid. Functionality of these suppressors was first verified in Nicotiana benthamiana and onion epidermal cells, and later tested by transient expression in sugarcane young leaf segments and protoplasts. In young leaf segments co-expressing a suppressor, EYFP reached its maximum expression at 48-96 h post-DNA introduction and maintained its peak expression for a longer time compared with that in the absence of a suppressor. Among the five suppressors, Tomato bushy stunt virus-encoded P19 and Barley stripe mosaic virus-encoded γb were the most efficient. Co-expression with P19 and γb enhanced EYFP expression 4.6-fold and 3.6-fold in young leaf segments, and GUS activity 2.3-fold and 2.4-fold in protoplasts compared with those in the absence of a suppressor, respectively. In transgenic sugarcane, co-expression of GUS and P19 suppressor showed the highest accumulation of GUS levels with an average of 2.7-fold more than when GUS was expressed alone, with no detrimental phenotypic effects. The two established transient expression assays, based on young leaf segments and protoplasts, and confirmed by stable transgene expression, offer a rapid versatile system to verify the efficiency of RNA silencing suppressors that proved to be valuable in enhancing and stabilizing transgene expression in sugarcane.


Asunto(s)
Regulación de la Expresión Génica de las Plantas , Virus del Mosaico/genética , Saccharum/genética , Tombusvirus/genética , Proteínas Bacterianas/biosíntesis , Proteínas Bacterianas/genética , Dosificación de Gen , Expresión Génica , Genes Reporteros , Genes Supresores , Genes Virales , Glucuronidasa/biosíntesis , Glucuronidasa/genética , Proteínas Luminiscentes/biosíntesis , Proteínas Luminiscentes/genética , Cebollas , Hojas de la Planta/genética , Hojas de la Planta/metabolismo , Hojas de la Planta/virología , Proteínas de Plantas/biosíntesis , Proteínas de Plantas/genética , Plantas Modificadas Genéticamente , Interferencia de ARN , Saccharum/metabolismo , Saccharum/virología , Nicotiana , Transgenes
3.
Plant Cell ; 24(4): 1579-95, 2012 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-22534126

RESUMEN

The immutans (im) variegation mutant of Arabidopsis thaliana is caused by an absence of PTOX, a plastid terminal oxidase bearing similarity to mitochondrial alternative oxidase (AOX). In an activation tagging screen for suppressors of im, we identified one suppression line caused by overexpression of AOX2. AOX2 rescued the im defect by replacing the activity of PTOX in the desaturation steps of carotenogenesis. Similar results were obtained when AOX1a was reengineered to target the plastid. Chloroplast-localized AOX2 formed monomers and dimers, reminiscent of AOX regulation in mitochondria. Both AOX2 and AOX1a were present in higher molecular weight complexes in plastid membranes. The presence of these proteins did not generally affect steady state photosynthesis, aside from causing enhanced nonphotochemical quenching in both lines. Because AOX2 was imported into chloroplasts using its own transpeptide, we propose that AOX2 is able to function in chloroplasts to supplement PTOX activity during early events in chloroplast biogenesis. We conclude that the ability of AOX1a and AOX2 to substitute for PTOX in the correct physiological and developmental contexts is a striking example of the capacity of a mitochondrial protein to replace the function of a chloroplast protein and illustrates the plasticity of the photosynthetic apparatus.


Asunto(s)
Proteínas de Arabidopsis/metabolismo , Arabidopsis/enzimología , Proteínas Mitocondriales/metabolismo , Oxidorreductasas/metabolismo , Proteínas de Plantas/metabolismo , Plastidios/enzimología , Arabidopsis/genética , Carotenoides/biosíntesis , Clorofila/metabolismo , Clorofila A , Cromatografía Líquida de Alta Presión , Activación Enzimática , Pruebas de Enzimas , Exones/genética , Fluorescencia , Genes Supresores , Proteínas Fluorescentes Verdes/metabolismo , Membranas Intracelulares/metabolismo , Proteínas Mitocondriales/química , Proteínas Mitocondriales/genética , Oxidorreductasas/química , Oxidorreductasas/genética , Fotosíntesis , Proteínas de Plantas/química , Proteínas de Plantas/genética , Plásmidos/genética , Multimerización de Proteína , Estructura Terciaria de Proteína , Transporte de Proteínas , Proteínas Recombinantes de Fusión/metabolismo , Relación Estructura-Actividad , Fracciones Subcelulares/enzimología , Supresión Genética
4.
Plant Cell Rep ; 31(8): 1517-26, 2012 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-22534683

RESUMEN

UNLABELLED: A method has been developed to genetically transform the medicinal plant Maesa lanceolata. Initially, we tested conditions for transient expression of GFP-bearing constructs in agroinfiltrated leaves. Leaf tissues of M. lanceolata were infiltrated with Agrobacterium tumefaciens carrying a nuclear-targeted GFP construct to allow the quantification of the transformation efficiency. The number of transfected cells was depended on the bacterial density, bacterial strains, the co-cultivation time, and presence of acetosyringone. The transient transformation assay generated the highest ratio of transfected cells over non-transfected cells upon 5 days post-infiltration using A. tumefaciens strain LBA4404 at an OD600 = 1.0 in the presence of 100 µM acetosyringone and in the absence of a viral suppressor construct. In a second series of experiments we set up a stable transformation protocol that resulted in the regeneration of kanamycin-resistant plants expressing nuclear GFP. This transformation protocol will be used to introduce overexpression and RNAi constructs into M. lanceolata plants that may interfere with triterpenoid saponin biosynthesis. KEY MESSAGE: We have developed a transformation protocol for saponin producing Maesa lanceolata. Using the protocol reported here, now we are able to generate the tools for the modification of saponin production.


Asunto(s)
Agrobacterium tumefaciens/fisiología , Técnicas Genéticas , Hojas de la Planta/microbiología , Primulaceae/genética , Primulaceae/microbiología , Saponinas/biosíntesis , Transformación Genética , Acetofenonas/metabolismo , Agrobacterium tumefaciens/citología , Agrobacterium tumefaciens/efectos de los fármacos , Agrobacterium tumefaciens/crecimiento & desarrollo , Cefotaxima/farmacología , Núcleo Celular/efectos de los fármacos , Núcleo Celular/metabolismo , Recuento de Colonia Microbiana , Expresión Génica/efectos de los fármacos , Silenciador del Gen/efectos de los fármacos , Genes Supresores , Proteínas Fluorescentes Verdes/metabolismo , Kanamicina/farmacología , Hojas de la Planta/citología , Hojas de la Planta/efectos de los fármacos , Brotes de la Planta/efectos de los fármacos , Brotes de la Planta/fisiología , Reacción en Cadena de la Polimerasa , Primulaceae/efectos de los fármacos , Regeneración/efectos de los fármacos , Factores de Tiempo , Transfección , Transformación Genética/efectos de los fármacos
5.
Transgenic Res ; 21(3): 645-54, 2012 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-21947784

RESUMEN

Trait genes are usually introduced into the plant genome together with a marker gene. The last one becomes unnecessary after transgene selection and characterization. One of the strategies to produce transgenic plants free from the selectable marker is based on site-specific recombination. The present study employed the transient Cre-lox system to remove the nptII marker gene from potato. Transient marker gene excision involves introduction of Cre protein in lox-target plants by PVX virus vector followed by plant regeneration. Using optimized experimental conditions, such as particle bombardment infection method and application of P19 silencing suppressor protein, 20-27% of regenerated plants were identified by PCR analysis as marker-free. Based on our comparison of the recombination frequencies observed in this study to the efficiency of other methods to avoid or eliminate marker genes in potato, we suggest that PVX-Cre mediated site-specific excisional recombination is a useful tool to generate potato plants without superfluous transgenic sequences.


Asunto(s)
Vectores Genéticos/genética , Integrasas/metabolismo , Potexvirus/genética , Solanum tuberosum/metabolismo , Agrobacterium tumefaciens/genética , Southern Blotting , Proteínas de la Cápside/genética , Proteínas de la Cápside/metabolismo , ADN de Plantas/genética , Silenciador del Gen , Genes Reporteros , Genes Supresores , Proteínas Fluorescentes Verdes/genética , Proteínas Fluorescentes Verdes/metabolismo , Integrasas/genética , Hojas de la Planta/genética , Hojas de la Planta/metabolismo , Hojas de la Planta/virología , Plantas Modificadas Genéticamente/genética , Plantas Modificadas Genéticamente/metabolismo , Plásmidos/genética , Recombinación Genética , Solanum tuberosum/genética , Tombusvirus/genética , Proteínas Virales/genética , Proteínas Virales/metabolismo
6.
Org Biomol Chem ; 9(24): 8495-503, 2011 Dec 21.
Artículo en Inglés | MEDLINE | ID: mdl-22068346

RESUMEN

In vitro-transcribed, unmodified, and non-aminoacylated amber suppressor tRNAs that are recognized by natural aminoacyl-tRNA synthetase were improved toward higher suppression efficiency in batch-mode cell-free translation in wheat germ extract. The suppression efficiency of the suppressor obtained through four sequence optimization steps (anticodon alteration of natural tRNAs (the first generation); chimerization of the efficient suppressors in the first generation; investigation and optimization of the effective parts in the second generation; combination of the optimized parts in the third generation) and by the terminal tuning was approximately 60%, which was 2.4-fold higher than that of the best suppressor in the first generation. In addition, an eRF1 aptamer further increased the efficiency up to 85%. This highly efficient suppression system also functioned well in a dialysis-based large-scale protein synthesis.


Asunto(s)
Genes Supresores , Extractos Vegetales/antagonistas & inhibidores , ARN de Transferencia/farmacología , Supresión Genética/efectos de los fármacos , Triticum/química , Sistema Libre de Células , Extractos Vegetales/química , Extractos Vegetales/genética , ARN de Transferencia/química , ARN de Transferencia/genética
7.
Otolaryngol Head Neck Surg ; 145(1): 64-70, 2011 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-21493295

RESUMEN

OBJECTIVE: Microsatellite alterations, especially those that cause loss of heterozygosity (LOH), have recently been postulated as a novel mechanism of carcinogenesis and a useful prognostic factor in many kinds of malignant tumors. However, few studies have focused on a specific site, hypopharynx. The aim of this study was to evaluate the relationship between LOH and hypopharyngeal squamous cell carcinoma (HPSCC). STUDY DESIGN: Laboratory-based study. SETTING: Integrated health care system. SUBJECTS AND METHODS: Matched normal and cancerous tissues from 30 patients with HPSCC were examined for LOH in 4 tumor suppressor genes (TSGs) (p16, Rb, E-cadherin, and p53) at loci 9p21, 13q21, 6q22, and 17p13, respectively, using microsatellite markers amplified by polymerase chain reaction. The results for each loci were compared with clinicopathological features. RESULTS: Among the 30 cases, 26 (86.7%) exhibited LOH, with the most common alteration being LOH at p53 (52.6%). Significantly higher rates of LOH detection were seen in Rb, p53, and the LOH-high group (cases where 2 or more loci with LOH were found) in cases of lymph node metastasis. Compared with stage I and II carcinoma, tumors of stages III and IV had significantly higher frequencies of LOH in Rb, p53, and the LOH-high group. However, the presence of LOH was not significantly correlated with survival. CONCLUSION: These results suggest that LOH in TSGs such as Rb and p53 may contribute to the development and progression of HPSCC. The presence of LOH in the primary tumor may also be predictive of lymph node metastasis.


Asunto(s)
Cadherinas/genética , Carcinoma de Células Escamosas/genética , Genes de Retinoblastoma/genética , Genes Supresores , Genes p16 , Genes p53/genética , Neoplasias Hipofaríngeas/genética , Pérdida de Heterocigocidad/genética , Anciano , Anciano de 80 o más Años , Carcinoma de Células Escamosas/mortalidad , Carcinoma de Células Escamosas/patología , Femenino , Humanos , Neoplasias Hipofaríngeas/mortalidad , Neoplasias Hipofaríngeas/patología , Hipofaringe/patología , Estimación de Kaplan-Meier , Masculino , Persona de Mediana Edad , Estadificación de Neoplasias , Reacción en Cadena de la Polimerasa , Pronóstico
8.
Genetics ; 186(3): 813-28, 2010 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-20713692

RESUMEN

In budding yeast, silent chromatin is defined at the region of telomeres, rDNA loci, and silent mating loci. Although the silent chromatin at different loci shows structural similarity, the underlying mechanism to establish, maintain, and inherit these structures may be fundamentally different. In this study, we found two arginine residues within histone H2B, which are specifically required to maintain either the telomeric or the rDNA silenct chromatin. Arginine 95 (R95) plays a specific role at telomeres, whereas arginine 102 (R102) is required to maintain the silent chromatin at rDNA and to ensure the integrity of rDNA loci by suppressing recombination between rDNA repeats. R95 mutants show enhanced rDNA silencing but a paradoxically low Sir2 protein abundance. Furthermore weakened silencing at telomeres in R95 mutants can be suppressed by a specific SIR3 allele, SIR3-D205N, which increases the affinity of Sir proteins to telomeres, suggesting H2B-R95 may directly mediate telomeric Sir protein-nucleosome interactions. Double mutations of R95 and R102 lead to desilencing of both rDNA and telomeres, indicating both arginines are necessary to ensure integrity of silent chromatin at these loci. Furthermore, mutations of R102 cause accumulation of extrachromosomal rDNA circles and reduce life span, suggesting that histone H2B contributes to longevity.


Asunto(s)
Arginina/metabolismo , Silenciador del Gen , Histonas/metabolismo , Saccharomyces cerevisiae/genética , Yin-Yang , Alelos , Sustitución de Aminoácidos/genética , Arginina/genética , Replicación del ADN/genética , ADN Ribosómico/genética , Regulación Fúngica de la Expresión Génica , Genes Supresores , Sitios Genéticos/genética , Modelos Genéticos , Modelos Moleculares , Mutación/genética , Nucleosomas/metabolismo , Fenotipo , Proteínas Reguladoras de Información Silente de Saccharomyces cerevisiae/genética , Proteínas Reguladoras de Información Silente de Saccharomyces cerevisiae/metabolismo , Sirtuina 2/genética , Sirtuina 2/metabolismo , Supresión Genética , Telómero/genética , Factores de Tiempo , Transcripción Genética
9.
Bioorg Med Chem Lett ; 17(5): 1216-20, 2007 Mar 01.
Artículo en Inglés | MEDLINE | ID: mdl-17188871

RESUMEN

A pool of 84-nt RNAs containing a randomized sequence of 50 nt was selected against gel-immobilized Escherichia coli release factor 1 (RF-1) responsible for translation termination at amber (UAG) stop codon. The strongest aptamer (class II-1) obtained from 43 clones bound to RF-1, but not to UAA/UGA-targeting RF-2, with Kd = 30+/-6 nM (SPR). A couple of unpaired hairpin domains in the aptamer were suggested as the sites of attachment of RF-1. By binding to and hence inhibiting the action of RF-1 specifically or bio-orthogonally, aptamer class II-1 enhanced the amber suppression efficiency in the presence of an anticodon-adjusted (CUA) suppressor tRNA without practically damaging the protein translation machinery of the cell-free extract of E. coli, as confirmed by the translation of amber-mutated (gfp(amber141) or gfp(amber178)) and wild-type (gfp(wild)) genes of GFP.


Asunto(s)
Aptámeros de Nucleótidos/farmacología , Evaluación Preclínica de Medicamentos/métodos , Proteínas de Escherichia coli/antagonistas & inhibidores , Factores de Terminación de Péptidos/antagonistas & inhibidores , Sitios de Unión , Codón de Terminación , Genes Supresores , Relación Estructura-Actividad , Especificidad por Sustrato
10.
Neurobiol Dis ; 24(1): 89-100, 2006 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-16887359

RESUMEN

Heme oxygenase-1 (HO-1) mRNA and protein levels are diminished in Alzheimer disease (AD) blood, cerebrospinal fluid (CSF) and choroid plexus. Herein, the presence of a heme oxygenase-1 suppressor (HOS) factor was ascertained by astroglial bioassay, biochemical techniques and immunofluorescence confocal microscopy. We report significantly augmented plasma HOS activity in AD patients relative to healthy elderly and neurological controls. The HOS factor was determined to be a 50-100 kDa heat-labile, heparin-binding glycoprotein that is unrelated to antioxidant ingestion, plasma total antioxidant capacity, circulating cortisol levels or apolipoprotein E epsilon4 carrier status. HOS bioactivity was recapitulated by exogenous alpha(1)-antitrypsin. alpha(1)-antitrypsin levels were significantly increased in AD plasma and correlated with HOS activity and MMSE scores. alpha(1)-antitrypsin immunodepletion attenuated HOS activity of AD plasma. In AD brain, alpha(1)-antitrypsin immunoreactivity was augmented and co-distributed with HO-1. HOS activity of alpha(1)-antitrypsin may curtail HO-1-dependent derangement of cerebral iron homeostasis and account for diminished HO-1 expression in AD peripheral tissues.


Asunto(s)
Enfermedad de Alzheimer/sangre , Enfermedad de Alzheimer/genética , Hemo-Oxigenasa 1/genética , Hemo-Oxigenasa 1/fisiología , alfa 1-Antitripsina/genética , alfa 1-Antitripsina/fisiología , Anciano , Animales , Antioxidantes/metabolismo , Northern Blotting , Encéfalo/patología , Plexo Coroideo/metabolismo , Cromatografía de Afinidad , Trastornos del Conocimiento/sangre , Trastornos del Conocimiento/genética , Trastornos del Conocimiento/metabolismo , ADN Complementario/biosíntesis , ADN Complementario/genética , Técnica del Anticuerpo Fluorescente , Genes Supresores , Humanos , Hidrocortisona/sangre , Microscopía Confocal , Persona de Mediana Edad , Pruebas Neuropsicológicas , ARN Mensajero/biosíntesis , ARN Mensajero/genética , Ratas , Ratas Sprague-Dawley
11.
Genetics ; 173(2): 661-75, 2006 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-16648583

RESUMEN

14-3-3 proteins are highly conserved polypeptides that participate in many biological processes by binding phosphorylated target proteins. The Saccharomyces cerevisiae BMH1 and BMH2 genes, whose concomitant deletion is lethal, encode two functionally redundant 14-3-3 isoforms. To gain insights into the essential function(s) shared by these proteins, we searched for high-dosage suppressors of the growth defects of temperature-sensitive bmh mutants. Both the protein kinase C1 (Pkc1) and its upstream regulators Wsc2 and Mid2 were found to act as high dosage suppressors of bmh mutants' temperature sensitivity, indicating a functional interaction between 14-3-3 and Pkc1. Consistent with a role of 14-3-3 proteins in Pkc1-dependent cellular processes, shift to the restrictive temperature of bmh mutants severely impaired initiation of DNA replication, polarization of the actin cytoskeleton, and budding, as well as cell wall integrity. Because Pkc1 acts in concert with the Swi4-Swi6 (SBF) transcriptional activator to control all these processes, the defective G(1)/S transition of bmh mutants might be linked to impaired SBF activity. Indeed, the levels of the G(1) cyclin CLN2 transcripts, which are positively regulated by SBF, were dramatically reduced in bmh mutants. Remarkably, budding and DNA replication defects of bmh mutants were suppressed by CLN2 expression from an SBF-independent promoter, suggesting that 14-3-3 proteins might contribute to regulating the late G(1) transcriptional program.


Asunto(s)
Proteínas 14-3-3/metabolismo , Proteínas de Saccharomyces cerevisiae/metabolismo , Saccharomyces cerevisiae/citología , Saccharomyces cerevisiae/metabolismo , Proteínas 14-3-3/genética , Actinas/metabolismo , Secuencia de Bases , Proteínas de Unión al Calcio/genética , Proteínas de Unión al Calcio/metabolismo , Pared Celular/metabolismo , Citoesqueleto/metabolismo , ADN de Hongos/genética , Fase G1 , Dosificación de Gen , Genes Fúngicos , Genes Supresores , Péptidos y Proteínas de Señalización Intracelular , Glicoproteínas de Membrana , Proteínas de la Membrana/genética , Proteínas de la Membrana/metabolismo , Mutación , Ósmosis , Proteína Quinasa C/genética , Proteína Quinasa C/metabolismo , Fase S , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/crecimiento & desarrollo , Proteínas de Saccharomyces cerevisiae/genética , Temperatura
12.
Mol Genet Genomics ; 275(1): 81-8, 2006 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-16328373

RESUMEN

The MPT5/HTR1/UTH4/PUF5 gene encodes an RNA-binding Puf-family protein in Saccharomyces cerevisiae. The Deltampt5 cells exhibit pleiotropic phenotypes, including the G2/M arrest of the cell cycle and weakened cell wall at high temperatures. The Deltampt5 disruptant was also hydroxyurea (HU) sensitive. In this study we screened deletion suppressors to rescue the temperature sensitivity of Deltampt5, and identified dsf1 (YEL070W), dsf2 (YBR007C), sir2, sir3, sir4 and swe1. Multicopy suppressors identified were PKC1 and its upstream genes, but not the downstream MAPK cascade genes. The overexpression of PKC1, however, did not suppress the HU sensitivity of Deltampt5. In contrast, both the HU- and temperature-sensitivities of a-type Deltampt5 cells were suppressed by each sir deletion or a multicopy of MATalpha2, suggesting that a diploid-type expression is involved. We found that a diploid-specific IME4 gene encoding an RNA-modifying protein was responsible for the suppression of the temperature sensitivity, but not of the HU sensitivity. Furthermore, the suppression of the HU sensitivity depended on PUF4, another Puf-family gene, and overexpression of PUF4 suppressed only the HU sensitivity of Deltampt5. The protein level of Puf4 was not affected by the sir mutation. Thus, these Ime4 and Puf4 proteins play complementary roles to rescue the defects in Deltampt5 Deltasir cells.


Asunto(s)
Proteínas de Ciclo Celular/genética , Eliminación de Gen , Genes Supresores , Proteínas Represoras/genética , Proteínas de Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/genética , División Celular/genética , Pared Celular/genética , Inhibidores Enzimáticos/farmacología , Fase G2/genética , Calor , Hidroxiurea/farmacología , Quinasas de Proteína Quinasa Activadas por Mitógenos/genética , Proteína Quinasa C/genética , Proteínas , Proteínas de Unión al ARN/genética
13.
Mol Microbiol ; 45(2): 351-63, 2002 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-12123449

RESUMEN

Escherichia coli and related bacteria contain two paralogous PII-like proteins involved in nitrogen regulation, the glnB product, PII, and the glnK product, GlnK. Previous studies have shown that cells lacking both PII and GlnK have a severe growth defect on minimal media, resulting from elevated expression of the Ntr regulon. Here, we show that this growth defect is caused by activity of the nac product, Nac, a LysR-type transcription factor that is part of the Ntr regulon. Cells with elevated Ntr expression that also contain a null mutation in nac displayed growth rates on minimal medium similar to the wild type. When expressed from high-copy plasmids, Nac imparts a growth defect to wild-type cells in an expression level-dependent manner. Neither expression of Nac nor lack thereof significantly affected Ntr gene expression, suggesting that the activity of Nac at one or more promoters outside the Ntr regulon was responsible for its effects. The growth defect of cells lacking both PII and GlnK was also eliminated upon supplementation of minimal medium with serine or glycine for solid medium or with serine or glycine and glutamine for liquid medium. These observations suggest that high Nac expression results in a reduction in serine biosynthesis. beta-Galactosidase activity expressed from a Mu d1 insertion in serA was reduced approximately 10-fold in cells with high Nac expression. We hypothesize that one role of Nac is to limit serine biosynthesis as part of a cellular mechanism to reduce metabolism in a co-ordinated manner when cells become starved for nitrogen.


Asunto(s)
Proteínas Bacterianas/fisiología , Proteínas Portadoras/fisiología , Proteínas de Unión al ADN/fisiología , Proteínas de Escherichia coli/genética , Proteínas de Escherichia coli/fisiología , Escherichia coli/genética , Regulación Bacteriana de la Expresión Génica , Regiones Promotoras Genéticas/genética , Factores de Transcripción/fisiología , Secuencia de Aminoácidos , Proteínas Bacterianas/biosíntesis , Proteínas Bacterianas/genética , Proteínas Portadoras/biosíntesis , Proteínas Portadoras/genética , Caseínas/farmacología , Medios de Cultivo/farmacología , Escherichia coli/efectos de los fármacos , Proteínas de Escherichia coli/biosíntesis , Regulación Bacteriana de la Expresión Génica/efectos de los fármacos , Genes Bacterianos , Genes Supresores , Glutamina/farmacología , Glicina/farmacología , Humanos , Datos de Secuencia Molecular , Nitrógeno/metabolismo , Fijación del Nitrógeno/genética , Proteínas PII Reguladoras del Nitrógeno , Hidrolisados de Proteína/farmacología , Proteínas Recombinantes de Fusión/metabolismo , Alineación de Secuencia , Homología de Secuencia , Serina/biosíntesis , Serina/farmacología
14.
FEBS Lett ; 481(2): 197-203, 2000 Sep 15.
Artículo en Inglés | MEDLINE | ID: mdl-10996323

RESUMEN

We examined the mechanism(s) for HERG channel dysfunction in an S818L mutation in the HERG C-terminus using the heterologous expression system in Xenopus oocytes. Injection of S818L cRNA alone did not produce expressed currents. Coinjection of an equal amount of S818L cRNA with wild-type (WT) cRNA into oocytes did not exhibit apparent dominant-negative suppression. However, coinjection of excess amounts of S818L cRNAs with WT cRNA into oocytes decreased HERG current amplitudes and shifted the voltage dependence of activation to negative potentials, accelerated its activation and deactivation. The data suggest that S818L alone cannot form functional channels, whereas S818L subunits can, at least in part, coassemble with WT subunits to form heterotetrameric functional channels, and imply that the HERG C-terminus may contain a domain involving the activation-deactivation process of the channel. These findings may provide new insights into the structure-function relationships of the HERG C-terminus.


Asunto(s)
Sustitución de Aminoácidos/genética , Proteínas de Transporte de Catión , Proteínas de Unión al ADN , Activación del Canal Iónico , Síndrome de QT Prolongado/genética , Mutación/genética , Canales de Potasio con Entrada de Voltaje , Canales de Potasio/genética , Canales de Potasio/metabolismo , Transactivadores , Animales , Canal de Potasio ERG1 , Conductividad Eléctrica , Canales de Potasio Éter-A-Go-Go , Genes Dominantes/genética , Genes Supresores/genética , Humanos , Potenciales de la Membrana , Microinyecciones , Oocitos , Fenotipo , Potasio/metabolismo , Canales de Potasio/química , Unión Proteica , Estructura Cuaternaria de Proteína , ARN Complementario/administración & dosificación , ARN Complementario/genética , Relación Estructura-Actividad , Regulador Transcripcional ERG , Xenopus laevis
15.
Plant J ; 23(1): 115-22, 2000 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-10929106

RESUMEN

Yeast Snf4 is a prototype of activating gamma-subunits of conserved Snf1/AMPK-related protein kinases (SnRKs) controlling glucose and stress signaling in eukaryotes. The catalytic subunits of Arabidopsis SnRKs, AKIN10 and AKIN11, interact with Snf4 and suppress the snf1 and snf4 mutations in yeast. By expression of an Arabidopsis cDNA library in yeast, heterologous multicopy snf4 suppressors were isolated. In addition to AKIN10 and AKIN11, the deficiency of yeast snf4 mutant to grown on non-fermentable carbon source was suppressed by Arabidopsis Myb30, CAAT-binding factor Hap3b, casein kinase I, zinc-finger factors AZF2 and ZAT10, as well as orthologs of hexose/UDP-hexose transporters, calmodulin, SMC1-cohesin and Snf4. Here we describe the characterization of AtSNF4, a functional Arabidopsis Snf4 ortholog, that interacts with yeast Snf1 and specifically binds to the C-terminal regulatory domain of Arabidopsis SnRKs AKIN10 and AKIN11.


Asunto(s)
Proteínas de Arabidopsis/genética , Arabidopsis/genética , Factor de Unión a CCAAT/genética , Proteínas Portadoras , Genes Supresores , Proteínas Quinasas/genética , Proteínas de Saccharomyces cerevisiae , Saccharomyces cerevisiae/genética , Factores de Transcripción/genética , Proteínas Quinasas Activadas por AMP , Secuencia de Aminoácidos , Proteínas de Arabidopsis/química , Secuencia de Bases , Factor de Unión a CCAAT/química , Cartilla de ADN , ADN Complementario , Datos de Secuencia Molecular , Proteínas Quinasas/química , Homología de Secuencia de Aminoácido , Factores de Transcripción/química
16.
Nucleic Acids Res ; 27(21): 4282-90, 1999 Nov 01.
Artículo en Inglés | MEDLINE | ID: mdl-10518622

RESUMEN

A parallel binding motif 16mer triplex-forming oligonucleotide (TFO) complementary to a polypurine-polypyrimidine target region near the 3'-end of the SupF gene of plasmid pSP189 was labeled with [5-(125)I]dCMP at position 15. Following triplex formation and decay accumulation, radiation-induced site-specific double-strand breaks (DSBs) were produced in the pSP189 SupF gene. Bulk damaged DNA and the isolated site-specific DSB-containing DNA were separately transfected into human WI38VA13 cells and allowed to repair prior to recovery and analysis of mutants. Bulk damaged DNA had a relatively low mutation frequency of 2.7 x 10(-3). In contrast, the isolated linear DNA containing site-specific DSBs had an unusually high mutation frequency of 7.9 x 10(-1). This was nearly 300-fold greater than that observed for the bulk damaged DNA mixture, and >1.5 x 10(4)-fold greater than background. The mutation spectra displayed a high proportion of deletion mutants targeted to the(125)I binding position within the SupF gene for both bulk damaged DNA and isolated linear DNA. Both spectra were characterized by complex mutations with mixtures of changes. However, mutations recovered from the linear site-specific DSB-containing DNA presented a much higher proportion of complex deletion mutations.


Asunto(s)
Daño del ADN/genética , Reparación del ADN/genética , ADN/metabolismo , Mutagénesis Sitio-Dirigida/efectos de la radiación , Mutación/efectos de la radiación , Oligodesoxirribonucleótidos/metabolismo , Secuencia de Bases , Bleomicina/farmacología , Línea Celular , ADN/genética , Daño del ADN/efectos de los fármacos , Daño del ADN/efectos de la radiación , Análisis Mutacional de ADN , Reparación del ADN/efectos de la radiación , Dosificación de Gen , Marcación de Gen , Genes Supresores , Humanos , Radioisótopos de Yodo/metabolismo , Datos de Secuencia Molecular , Mutagénesis Sitio-Dirigida/genética , Mutación/efectos de los fármacos , Mutación/genética , Conformación de Ácido Nucleico/efectos de los fármacos , Conformación de Ácido Nucleico/efectos de la radiación , Hibridación de Ácido Nucleico , Oligodesoxirribonucleótidos/genética , Plásmidos/química , Plásmidos/genética , Plásmidos/metabolismo , ARN de Transferencia/genética , Transfección
17.
Development ; 126(14): 3079-88, 1999 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-10375500

RESUMEN

The plant cytoskeleton plays a pivotal role in determining the direction of cell wall expansion, and ultimately the cell's final shape. However, the mechanisms by which localized expansion events are initiated remain obscure. Mutational analysis of the trichome (plant hair) morphogenic pathway in Arabidopsis has identified at least eight genes that determine trichome branch number. One of these genes, ZWICHEL (ZWI), encodes a novel member of the kinesin superfamily of motor proteins. Mutations in the ZWI gene cause a reduction in the number of trichome branches. To identify additional genes involved in trichome branch initiation, we screened for extragenic suppressors of the zwi-3 mutation and isolated three suppressors that rescued the branch number defect of zwi-3. These suppressors define three genes, named suz, for suppressor of zwichel-3. All of the suppressors were shown to be allele specific. One of the suppressors, suz2, also rescued the trichome branch number defect of another branch mutant, furca1-2. Plants homozygous for suz2 have more than the wild-type number of trichome branches. This suggests that SUZ2 is a negative regulator of trichome branching and may interact with ZWI and FURCA1. The suz1 and suz3 mutants display no obvious phenotype in the absence of the zwi-3 mutation. The suz1 zwi-3 double mutants also exhibited a male-sterile phenotype due to a defect in pollen tube germination and growth, whereas both the suz1 and the zwi-3 single mutants are fertile. The synthetic male sterility of the suz1 zwi-3 double mutants suggests a role for SUZ1 and ZWI in pollen germination and pollen tube growth. DNA sequence analysis of the zwi-3 mutation indicated that only the tail domain of the zwi-3 protein would be expressed. Thus, the suz mutations show allele-specific suppression of a kinesin mutant that lacks the motor domain.


Asunto(s)
Proteínas de Arabidopsis , Arabidopsis/genética , Proteínas de Unión a Calmodulina/genética , Genes Supresores , Mutación , Proteínas de Plantas/genética , Polen/crecimiento & desarrollo , Arabidopsis/fisiología , Regulación de la Expresión Génica de las Plantas , Germinación , Fenotipo , Polen/genética , Reproducción/genética
18.
Somat Cell Mol Genet ; 25(1): 9-26, 1999 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-10925700

RESUMEN

Many anticancer drugs inhibit DNA replication. To investigate the mechanism of permanent growth inhibition after transient arrest of DNA replication, we selected genetic suppressor elements (GSEs) conferring resistance to replication inhibitor Aphidicolin. Starting from a retroviral expression library carrying normalized fragments of human cell cDNA, we isolated four GSEs which, when introduced as a combination, produced resistance to Aphidicolin, doxorubicin and hydroxyurea in HT1080 fibrosarcoma cells. The four GSEs were derived from ORFX bromodomain protein gene, WIZ zinc finger protein gene, the gene for subunit 3 of cytochrome c oxidase, and the gene corresponding to an EST with no known function. A cell line carrying all four GSEs showed a weaker induction of the senescence-like phenotype after treatment with Aphidicolin or doxorubicin; the resistance of this cell line was not associated with decreased doxorubicin accumulation. These results indicate that combined effects of GSEs derived from these four genes increase cellular resistance to replication-inhibiting drugs, possibly by inhibiting drug-induced senescence.


Asunto(s)
Afidicolina/farmacología , Replicación del ADN/efectos de los fármacos , Genes Supresores , Antineoplásicos/farmacología , Secuencia de Bases , ADN sin Sentido/genética , ADN Complementario/genética , ADN Complementario/aislamiento & purificación , Doxorrubicina/farmacología , Resistencia a Medicamentos/genética , Biblioteca de Genes , Células HeLa , Humanos , Hidroxiurea/farmacología , Datos de Secuencia Molecular , Células Tumorales Cultivadas
19.
Genes Dev ; 12(10): 1425-37, 1998 May 15.
Artículo en Inglés | MEDLINE | ID: mdl-9585503

RESUMEN

Receptor tyrosine phosphatases have been implicated in playing important roles in cell signaling events by their ability to regulate the level of protein tyrosine phosphorylation. Although the catalytic activity of their phosphatase domains has been well established, the biological roles of these molecules are, for the most part, not well understood. Here we show that the Caenorhabditis elegans protein CLR-1 (CLeaR) is a receptor tyrosine phosphatase (RTP) with a complex extracellular region and two intracellular phosphatase domains. Mutations in clr-1 result in a dramatic Clr phenotype that we have used to study the physiological requirements for the CLR-1 RTP. We show that the phosphatase activity of the membrane-proximal domain is essential for the in vivo function of CLR-1. By contrast, we present evidence that the membrane-distal domain is not required to prevent the Clr phenotype in vivo. The Clr phenotype of clr-1 mutants is mimicked by activation of the EGL-15 fibroblast growth factor receptor (FGFR) and is suppressed by mutations that reduce or eliminate the activity of egl-15. Our data strongly indicate that CLR-1 attenuates the action of an FGFR-mediated signaling pathway by dephosphorylation.


Asunto(s)
Proteínas de Caenorhabditis elegans , Caenorhabditis elegans/fisiología , Genes de Helminto , Proteínas del Helminto/fisiología , Procesamiento Proteico-Postraduccional , Proteínas Tirosina Fosfatasas/fisiología , Receptores de Factores de Crecimiento de Fibroblastos/fisiología , Transducción de Señal/fisiología , Alelos , Secuencia de Aminoácidos , Animales , Células COS , Caenorhabditis elegans/genética , Cromosomas Artificiales de Levadura , Secuencia de Consenso , ADN Complementario/genética , ADN de Helmintos/genética , Escherichia coli , Genes Supresores , Heterogeneidad Genética , Proteínas del Helminto/genética , Datos de Secuencia Molecular , Fenotipo , Fosforilación , Proteínas Tirosina Fosfatasas/genética , Proteínas Tirosina Fosfatasas Similares a Receptores , Receptores de Factores de Crecimiento de Fibroblastos/genética , Proteínas Recombinantes de Fusión/metabolismo , Alineación de Secuencia , Homología de Secuencia de Aminoácido , Transducción de Señal/genética , Relación Estructura-Actividad , Temperatura , Transfección
20.
Genetics ; 148(4): 1787-98, 1998 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-9560393

RESUMEN

The yeast CDC1 gene encodes an essential protein that has been implicated in the regulation of cytosolic [Mn2+]. To identify factors that impinge upon Cdc1 or the Cdc1-dependent process, we isolated second-site suppressors of the conditional cdc1-1(Ts) growth defect. Recessive suppressors define 15 COS (CdcOne Suppressor) genes. Seven of the fifteen COS genes are required for biogenesis of the vacuole, an organelle known to sequester intracellular Mn2+. An eighth gene, COS16, encodes a vacuolar membrane protein that seems to be involved in Mn2+ homeostasis. These results suggest mutations that block vacuolar Mn2+ sequestration compensate for defects in Cdc1 function. Interestingly, Cdc1 is dispensable in a cos16delta deletion strain, and a cdc1delta cos16delta double mutant exhibits robust growth on medium supplemented with Mn2+. Thus, the single, essential function of Cdc1 is to regulate intracellular, probably cytosolic, Mn2+.


Asunto(s)
Adenosina Trifosfatasas , Proteínas de Ciclo Celular/fisiología , Homeostasis/fisiología , Manganeso/metabolismo , Proteínas de Saccharomyces cerevisiae , Saccharomyces cerevisiae/fisiología , Factores de Ribosilacion-ADP , Proteínas Adaptadoras del Transporte Vesicular , Ácido Aspártico Endopeptidasas/genética , Carboxipeptidasas/metabolismo , Catepsina A , Proteínas de Ciclo Celular/genética , Complejos de Clasificación Endosomal Requeridos para el Transporte , Proteínas Fúngicas/genética , Proteínas de Unión al GTP/genética , Genes Fúngicos , Genes Supresores , Proteínas de la Membrana/genética , Fenotipo , Saccharomyces cerevisiae/genética , Fracciones Subcelulares , Temperatura , Vacuolas , Proteínas de Transporte Vesicular
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