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1.
BMC Genomics ; 23(1): 667, 2022 Sep 22.
Artículo en Inglés | MEDLINE | ID: mdl-36138347

RESUMEN

BACKGROUND: As a type of calmodulin binding protein, CAMTAs are widely involved in vegetative and reproductive processes as well as various hormonal and stress responses in plants. To study the functions of CAMTA genes in tea plants, we investigated bioinformatics analysis and performed qRT-PCR analysis of the CAMTA gene family by using the genomes of 'ShuChaZao' tea plant cultivar. RESULTS: In this study, 6 CsCAMTAs were identified from tea plant genome. Bioinformatics analysis results showed that all CsCAMTAs contained six highly conserved functional domains. Tissue-specific analysis results found that CsCAMTAs played great roles in mediating tea plant aging and flowering periods. Under hormone and abiotic stress conditions, most CsCAMTAs were upregulated at different time points under different treatment conditions. In addition, the expression levels of CsCAMTA1/3/4/6 were higher in cold-resistant cultivar 'LongJing43' than in the cold-susceptible cultivar 'DaMianBai' at cold acclimation stage, while CsCAMTA2/5 showed higher expression levels in 'DaMianBai' than in 'LongJing43' during entire cold acclimation periods. CONCLUSIONS: In brief, the present results revealed that CsCAMTAs played great roles in tea plant growth, development and stress responses, which laid the foundation for deeply exploring their molecular regulation mechanisms.


Asunto(s)
Camellia sinensis , Regulación de la Expresión Génica de las Plantas , Calmodulina/genética , Calmodulina/metabolismo , Proteínas de Unión a Calmodulina/genética , Proteínas de Unión a Calmodulina/metabolismo , Camellia sinensis/metabolismo , Hormonas/metabolismo , Filogenia , Proteínas de Plantas/metabolismo , Estrés Fisiológico/genética , Té/metabolismo
2.
Nature ; 607(7919): 534-539, 2022 07.
Artículo en Inglés | MEDLINE | ID: mdl-35794475

RESUMEN

Precise signalling between pollen tubes and synergid cells in the ovule initiates fertilization in flowering plants1. Contact of the pollen tube with the ovule triggers calcium spiking in the synergids2,3 that induces pollen tube rupture and sperm release. This process, termed pollen tube reception, entails the action of three synergid-expressed proteins in Arabidopsis: FERONIA (FER), a receptor-like kinase; LORELEI (LRE), a glycosylphosphatidylinositol-anchored protein; and NORTIA (NTA), a transmembrane protein of unknown function4-6. Genetic analyses have placed these three proteins in the same pathway; however, it remains unknown how they work together to enable synergid-pollen tube communication. Here we identify two pollen-tube-derived small peptides7 that belong to the rapid alkalinization factor (RALF) family8 as ligands for the FER-LRE co-receptor, which in turn recruits NTA to the plasma membrane. NTA functions as a calmodulin-gated calcium channel required for calcium spiking in the synergid. We also reconstitute the biochemical pathway in which FER-LRE perceives pollen-tube-derived peptides to activate the NTA calcium channel and initiate calcium spiking, a second messenger for pollen tube reception. The FER-LRE-NTA trio therefore forms a previously unanticipated receptor-channel complex in the female cell to recognize male signals and trigger the fertilization process.


Asunto(s)
Proteínas de Arabidopsis , Arabidopsis , Señalización del Calcio , Calcio , Proteínas de Unión a Calmodulina , Glicoproteínas de Membrana , Fosfotransferasas , Tubo Polínico , Polen , Arabidopsis/anatomía & histología , Arabidopsis/metabolismo , Proteínas de Arabidopsis/metabolismo , Calcio/metabolismo , Canales de Calcio/metabolismo , Proteínas de Unión a Calmodulina/metabolismo , Membrana Celular/metabolismo , Fertilización , Glicoproteínas de Membrana/metabolismo , Óvulo Vegetal/metabolismo , Hormonas Peptídicas/metabolismo , Fosfotransferasas/metabolismo , Polen/metabolismo , Tubo Polínico/metabolismo
3.
Elife ; 102021 09 09.
Artículo en Inglés | MEDLINE | ID: mdl-34499028

RESUMEN

The ubiquitous Ca2+ sensor calmodulin (CaM) binds and regulates many proteins, including ion channels, CaM kinases, and calcineurin, according to Ca2+-CaM levels. What regulates neuronal CaM levels, is, however, unclear. CaM-binding transcription activators (CAMTAs) are ancient proteins expressed broadly in nervous systems and whose loss confers pleiotropic behavioral defects in flies, mice, and humans. Using Caenorhabditis elegans and Drosophila, we show that CAMTAs control neuronal CaM levels. The behavioral and neuronal Ca2+ signaling defects in mutants lacking camt-1, the sole C. elegans CAMTA, can be rescued by supplementing neuronal CaM. CAMT-1 binds multiple sites in the CaM promoter and deleting these sites phenocopies camt-1. Our data suggest CAMTAs mediate a conserved and general mechanism that controls neuronal CaM levels, thereby regulating Ca2+ signaling, physiology, and behavior.


Asunto(s)
Proteínas de Unión a Calmodulina/metabolismo , Calmodulina/metabolismo , Proteínas de Drosophila/metabolismo , Neuronas/metabolismo , Transactivadores/metabolismo , Factores de Transcripción/metabolismo , Animales , Caenorhabditis elegans/metabolismo , Calcineurina/metabolismo , Calcio/metabolismo , Drosophila/metabolismo , Proteínas de Drosophila/genética , Drosophila melanogaster , Femenino , Edición Génica , Regulación de la Expresión Génica , Humanos , Masculino , Ratones , Unión Proteica , Transducción de Señal , Transactivadores/genética , Transcriptoma
4.
Cardiovasc Res ; 117(11): 2395-2406, 2021 09 28.
Artículo en Inglés | MEDLINE | ID: mdl-33508088

RESUMEN

AIMS: In-stent restenosis and late stent thrombosis are complications associated with the use of metallic and drug-coated stents. Strategies that inhibit vascular smooth muscle cell (SMC) proliferation without affecting endothelial cell (EC) growth would be helpful in reducing complications arising from percutaneous interventions. SMC hyperplasia is also a pathologic feature of graft stenosis and fistula failure. Our group previously showed that forced expression of the injury-inducible zinc finger (ZNF) transcription factor, yin yang-1 (YY1), comprising 414 residues inhibits neointima formation in carotid arteries of rabbits and rats. YY1 inhibits SMC proliferation without affecting EC growth in vitro. Identifying a shorter version of YY1 retaining cell-selective inhibition would make it more amenable for potential use as a gene therapeutic agent. METHODS AND RESULTS: We dissected YY1 into a range of shorter fragments (YY1A-D, YY1Δ) and found that the first two ZNFs in YY1 (construct YY1B, spanning 52 residues) repressed SMC proliferation. Receptor binding domain analysis predicts a three-residue (339KLK341) interaction domain. Mutation of 339KLK341 to 339AAA341 in YY1B (called YY1Bm) abrogated YY1B's ability to inhibit SMC but not EC proliferation and migration. Incubation of recombinant GST-YY1B and GST-YY1Bm with SMC lysates followed by precipitation with glutathione-agarose beads and mass spectrometric analysis identified a novel interaction between YY1B and BASP1. Overexpression of BASP1, like YY1, inhibited SMC but not EC proliferation and migration. BASP1 siRNA partially rescued SMC from growth inhibition by YY1B. In the rat carotid balloon injury model, adenoviral overexpression of YY1B, like full-length YY1, reduced neointima formation, whereas YY1Bm had no such effect. CD31+ immunostaining suggested YY1B could increase re-endothelialization in a 339KLK341-dependent manner. CONCLUSION: These studies identify a truncated form of YY1 (YY1B) that can interact with BASP1 and inhibit SMC proliferation, migration, and intimal hyperplasia after balloon injury of rat carotid arteries as effectively as full length YY1. We demonstrate the therapeutic potential of YY1B in vascular proliferative disease.


Asunto(s)
Proteínas de Unión a Calmodulina/metabolismo , Traumatismos de las Arterias Carótidas/terapia , Proliferación Celular , Proteínas del Citoesqueleto/metabolismo , Terapia Genética , Proteínas de la Membrana/metabolismo , Músculo Liso Vascular/metabolismo , Miocitos del Músculo Liso/metabolismo , Neointima , Proteínas del Tejido Nervioso/metabolismo , Proteínas Represoras/metabolismo , Factor de Transcripción YY1/metabolismo , Secuencias de Aminoácidos , Animales , Proteínas de Unión a Calmodulina/genética , Traumatismos de las Arterias Carótidas/genética , Traumatismos de las Arterias Carótidas/metabolismo , Traumatismos de las Arterias Carótidas/patología , Arteria Carótida Común/metabolismo , Arteria Carótida Común/patología , Bovinos , Células Cultivadas , Proteínas del Citoesqueleto/genética , Modelos Animales de Enfermedad , Hiperplasia , Proteínas de la Membrana/genética , Músculo Liso Vascular/lesiones , Músculo Liso Vascular/patología , Miocitos del Músculo Liso/patología , Proteínas del Tejido Nervioso/genética , Fragmentos de Péptidos/genética , Fragmentos de Péptidos/metabolismo , Unión Proteica , Dominios y Motivos de Interacción de Proteínas , Conejos , Ratas , Proteínas Represoras/genética , Transducción de Señal , Factor de Transcripción YY1/genética
5.
Cell Rep ; 31(9): 107700, 2020 06 02.
Artículo en Inglés | MEDLINE | ID: mdl-32492416

RESUMEN

Synaptic dysregulation is a critical feature of autism spectrum disorders (ASDs). Among various autism-associated genes, cortactin binding protein 2 (CTTNBP2) is a cytoskeleton regulator predominantly expressed in neurons and highly enriched at dendritic spines. Here, using Cttnbp2 knockout and ASD-linked mutant mice, we demonstrate that Cttnbp2 deficiency reduces zinc levels in the brain, alters synaptic protein targeting, impairs dendritic spine formation and ultrastructure of postsynaptic density, and influences neuronal activation and autism-like behaviors. A link to autism, the NMDAR-SHANK pathway, and zinc-related regulation are three features shared by CTTNBP2-regulated synaptic proteins. Zinc supplementation rescues the synaptic expression of CTTNBP2-regulated proteins. Moreover, zinc supplementation and administration of D-cycloserine, an NMDAR coagonist, improve the social behaviors of Cttnbp2-deficient mice. We suggest that CTTNBP2 controls the synaptic expression of a set of zinc-regulated autism-associated genes and influences NMDAR function and signaling, providing an example of how genetic and environmental factor crosstalk controls social behaviors.


Asunto(s)
Espinas Dendríticas/metabolismo , Proteínas de Microfilamentos/metabolismo , Proteínas del Tejido Nervioso/metabolismo , Zinc/metabolismo , Animales , Conducta Animal/efectos de los fármacos , Proteínas de Unión a Calmodulina/genética , Proteínas de Unión a Calmodulina/metabolismo , Cicloserina/farmacología , Espinas Dendríticas/ultraestructura , Suplementos Dietéticos , Femenino , Regulación de la Expresión Génica/efectos de los fármacos , Masculino , Proteínas de la Membrana/genética , Proteínas de la Membrana/metabolismo , Ratones , Ratones Endogámicos C57BL , Ratones Noqueados , Proteínas de Microfilamentos/genética , Proteínas del Tejido Nervioso/genética , Neuronas/citología , Neuronas/metabolismo , Receptores de N-Metil-D-Aspartato/metabolismo , Transducción de Señal/efectos de los fármacos , Conducta Social , Zinc/farmacología , Proteínas de Unión al GTP rac/genética , Proteínas de Unión al GTP rac/metabolismo
6.
Biochimie ; 137: 115-123, 2017 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-28322928

RESUMEN

Imposition of different biotic and abiotic stress conditions results in an increase in intracellular levels of Ca2+ which is sensed by various sensor proteins. Calmodulin (CaM) is one of the best studied transducers of Ca2+ signals. CaM undergoes conformational changes upon binding to Ca2+ and interacts with different types of proteins, thereby, regulating their activities. The present study reports the cloning and characterization of a sorghum cDNA encoding a protein (SbGRBP) that shows homology to glycine-rich RNA-binding proteins. The expression of SbGRBP in the sorghum seedlings is modulated by heat stress. The SbGRBP protein is localized in the nucleus as well as in cytosol, and shows interaction with CaM that requires the presence of Ca2+. SbGRBP depicts binding to single- and also double-stranded DNA. Fluorescence spectroscopic analyses suggest that interaction of SbGRBP with nucleic acids may be modulated after binding with CaM. To our knowledge, this is the first study to provide evidence for interaction of a stress regulated glycine-rich RNA-binding protein with CaM.


Asunto(s)
Proteínas de Unión a Calmodulina/metabolismo , Calmodulina/metabolismo , Regulación de la Expresión Génica de las Plantas , Glicina/química , Proteínas de Plantas/metabolismo , Sorghum/metabolismo , Calcio , Proteínas de Unión a Calmodulina/genética , ADN Complementario/genética , ADN de Plantas , Proteínas de Plantas/genética , Unión Proteica , Sorghum/genética , Sorghum/crecimiento & desarrollo , Temperatura
7.
Cereb Cortex ; 26(7): 3260-72, 2016 07.
Artículo en Inglés | MEDLINE | ID: mdl-26980613

RESUMEN

Plasticity-related gene-1 (PRG-1) is a brain-specific protein that modulates glutamatergic synaptic transmission. Here we investigated the functional role of PRG-1 in adolescent and adult mouse barrel cortex both in vitro and in vivo. Compared with wild-type (WT) animals, PRG-1-deficient (KO) mice showed specific behavioral deficits in tests assessing sensorimotor integration and whisker-based sensory discrimination as shown in the beam balance/walking test and sandpaper tactile discrimination test, respectively. At P25-31, spontaneous network activity in the barrel cortex in vivo was higher in KO mice compared with WT littermates, but not at P16-19. At P16-19, sensory evoked cortical responses in vivo elicited by single whisker stimulation were comparable in KO and WT mice. In contrast, at P25-31 evoked responses were smaller in amplitude and longer in duration in WT animals, whereas KO mice revealed no such developmental changes. In thalamocortical slices from KO mice, spontaneous activity was increased already at P16-19, and glutamatergic thalamocortical inputs to Layer 4 spiny stellate neurons were potentiated. We conclude that genetic ablation of PRG-1 modulates already at P16-19 spontaneous and evoked excitability of the barrel cortex, including enhancement of thalamocortical glutamatergic inputs to Layer 4, which distorts sensory processing in adulthood.


Asunto(s)
Proteínas de Unión a Calmodulina/metabolismo , Proteínas del Tejido Nervioso/metabolismo , Neuronas/metabolismo , Corteza Somatosensorial/metabolismo , Transmisión Sináptica/fisiología , Tálamo/metabolismo , Vibrisas/fisiología , Animales , Proteínas de Unión a Calmodulina/genética , Femenino , Ácido Glutámico/metabolismo , Masculino , Ratones Noqueados , Proteínas del Tejido Nervioso/genética , Vías Nerviosas/crecimiento & desarrollo , Vías Nerviosas/metabolismo , Plasticidad Neuronal/fisiología , Técnicas de Placa-Clamp , Equilibrio Postural/fisiología , Corteza Somatosensorial/crecimiento & desarrollo , Tálamo/crecimiento & desarrollo , Técnicas de Cultivo de Tejidos , Percepción del Tacto/fisiología , Caminata/fisiología
8.
Sci Rep ; 4: 5263, 2014 Jun 12.
Artículo en Inglés | MEDLINE | ID: mdl-24919580

RESUMEN

Previous genetic studies have revealed that a pollen-specific calmodulin-binding protein, No Pollen Germination 1 (NPG1), is required for pollen germination. However, its mode of action is unknown. Here we report direct interaction of NPG1 with pectate lyase-like proteins (PLLs). A truncated form of AtNPG1 lacking the N-terminal tetratricopeptide repeat 1 (TPR1) failed to interact with PLLs, suggesting that it is essential for NPG1 interaction with PLLs. Localization studies with AtNPG1 fused to a fluorescent reporter driven by its native promoter revealed its presence in the cytosol and cell wall of the pollen grain and the growing pollen tube of plasmolyzed pollen. Together, our data suggest that the function of NPG1 in regulating pollen germination is mediated through its interaction with PLLs, which may modify the pollen cell wall and regulate pollen tube emergence and growth.


Asunto(s)
Proteínas de Unión a Calmodulina/metabolismo , Calmodulina/metabolismo , Proteínas Portadoras/metabolismo , Germinación/fisiología , Polen/metabolismo , Polisacárido Liasas/metabolismo , Diferenciación Celular/fisiología , Pared Celular/metabolismo , Colorantes/metabolismo , Citosol/metabolismo , Polinización/fisiología
9.
Mol Vis ; 19: 2561-70, 2013.
Artículo en Inglés | MEDLINE | ID: mdl-24357924

RESUMEN

PURPOSE: Structures of the aqueous humor drainage tract are contractile, although the tract is not entirely composed of muscle. We characterized the mouse aqueous drainage tract by immunolabeling contractile markers and determined whether profiling these markers within the tract distinguished its key structures of the trabecular meshwork (TM) and ciliary muscle (CM). METHODS: Enucleated eyes from pigmented C57BL/6 (n=8 mice) and albino BALB/c (n=6 mice) mice were processed for cryo- and formalin-fixed paraffin-embedded sectioning. Immunofluorescence labeling was performed for the following: (a) filamentous actin (using fluorescence-conjugated phalloidin), representing a global contractile marker; (b) α-smooth muscle actin (α-SMA), caldesmon, and calponin, representing classic smooth muscle epitopes; and (c) nonmuscle myosin heavy chain, representing a nonmuscle contractile protein. Tissue labeling was identified by confocal microscopy and analyzed quantitatively. Hematoxylin and eosin staining provided structural orientation. RESULTS: A small portion of the TM faced the anterior chamber; the rest extended posteriorly alongside Schlemm's canal (SC) within the inner sclera. Within the drainage tract, filamentous actin labeling was positive in TM and CM. α-SMA and caldesmon labeling was seen primarily along the CM, which extended from the anterior chamber angle to its posterior termination beyond the SC near the retina. Low intensity, patchy α-SMA and caldesmon labeling was seen in the TM. Myosin heavy chain immunoreactivity was primarily found in the TM and calponin was primarily observed in the CM. C57BL/6 and BALB/c comparison showed that pigment obscured fluorescence in the ciliary body. CONCLUSIONS: Our strategy of profiling contractile markers distinguished mouse aqueous drainage tract structures that were otherwise indistinguishable by hematoxylin and eosin staining. The mouse TM was seen as an intervening structure between SC, a part of the conventional drainage tract, and CM, a part of the unconventional drainage tract. Our findings provide important insights into the structural and functional organization of the mouse aqueous drainage tract and a basis for exploring the role of contractility in modulating aqueous outflow.


Asunto(s)
Humor Acuoso/metabolismo , Cuerpo Ciliar/metabolismo , Esclerótica/metabolismo , Malla Trabecular/metabolismo , Actinas/metabolismo , Animales , Humor Acuoso/citología , Biomarcadores/metabolismo , Proteínas de Unión al Calcio/metabolismo , Proteínas de Unión a Calmodulina/metabolismo , Cuerpo Ciliar/ultraestructura , Eosina Amarillenta-(YS) , Hematoxilina , Inmunohistoquímica , Ratones , Ratones Endogámicos BALB C , Ratones Endogámicos C57BL , Proteínas de Microfilamentos/metabolismo , Microscopía Confocal , Cadenas Pesadas de Miosina/metabolismo , Esclerótica/ultraestructura , Malla Trabecular/ultraestructura , Calponinas
10.
J Biomol Screen ; 18(10): 1309-20, 2013 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-24221842

RESUMEN

Perturbed intracellular store calcium homeostasis is suggested to play a major role in the pathophysiology of Alzheimer disease (AD). A number of mechanisms have been suggested to underlie the impairment of endoplasmic reticulum calcium homeostasis associated with familial AD-linked presenilin 1 mutations (FAD-PS1). Without aiming at specifically targeting any of those pathophysiological mechanisms in particular, we rather performed a high-throughput phenotypic screen to identify compounds that can reverse the exaggerated agonist-evoked endoplasmic reticulum calcium release phenotype in HEK293 cells expressing FAD-PS1. For that purpose, we developed a fully automated high-throughput calcium imaging assay using a fluorescence resonance energy transfer-based calcium indicator at single-cell resolution. This novel robust assay offers a number of advantages compared with the conventional calcium measurement screening technologies. The assay was employed in a large-scale screen with a library of diverse compounds comprising 20,000 low-molecular-weight molecules, which resulted in the identification of 52 primary hits and 4 lead structures. In a secondary assay, several hits were found to alter the amyloid ß (Aß) production. In view of the recent failure of AD drug candidates identified by target-based approaches, such a phenotypic drug discovery paradigm may present an attractive alternative for the identification of novel AD therapeutics.


Asunto(s)
Enfermedad de Alzheimer/tratamiento farmacológico , Señalización del Calcio/efectos de los fármacos , Proteínas Bacterianas/química , Proteínas Bacterianas/metabolismo , Proteínas de Unión a Calmodulina/química , Proteínas de Unión a Calmodulina/metabolismo , Carbacol/farmacología , Evaluación Preclínica de Medicamentos/métodos , Retículo Endoplásmico/efectos de los fármacos , Retículo Endoplásmico/metabolismo , Transferencia Resonante de Energía de Fluorescencia , Colorantes Fluorescentes/química , Colorantes Fluorescentes/metabolismo , Proteínas Fluorescentes Verdes/química , Proteínas Fluorescentes Verdes/metabolismo , Células HEK293 , Ensayos Analíticos de Alto Rendimiento/métodos , Homeostasis , Humanos , Proteínas Luminiscentes/química , Proteínas Luminiscentes/metabolismo , Microscopía Fluorescente , Fenotipo , Proteínas Recombinantes de Fusión/química , Proteínas Recombinantes de Fusión/metabolismo
11.
Mol Biosyst ; 9(6): 1234-48, 2013 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-23549413

RESUMEN

Ca(2+)/Calmodulin (CaM)-dependent signaling pathways play a major role in the modulation of cell responses in eukaryotes. In the chloroplast, few proteins such as the NAD(+) kinase 2 have been previously shown to interact with CaM, but a general picture of the role of Ca(2+)/CaM signaling in this organelle is still lacking. Using CaM-affinity chromatography and mass spectrometry, we identified 210 candidate CaM-binding proteins from different Arabidopsis and spinach chloroplast sub-fractions. A subset of these proteins was validated by an optimized in vitro CaM-binding assay. In addition, we designed two fluorescence anisotropy assays to quantitatively characterize the binding parameters and applied those assays to NAD(+) kinase 2 and selected candidate proteins. On the basis of our results, there might be many more plastidial CaM-binding proteins than previously estimated. In addition, we showed that an array of complementary biochemical techniques is necessary in order to characterize the mode of interaction of candidate proteins with CaM.


Asunto(s)
Arabidopsis/metabolismo , Proteínas de Unión a Calmodulina/metabolismo , Cloroplastos/metabolismo , Proteoma/análisis , Spinacia oleracea/metabolismo , Proteínas de Arabidopsis/metabolismo , Calcio/química , Calcio/metabolismo , Calmodulina/química , Calmodulina/metabolismo , Proteínas de Unión a Calmodulina/química , Proteínas de Unión a Calmodulina/genética , Perfilación de la Expresión Génica , Fosfotransferasas (Aceptor de Grupo Alcohol)/análisis , Fosfotransferasas (Aceptor de Grupo Alcohol)/química , Hojas de la Planta , Proteínas de Plantas/metabolismo , Unión Proteica , Transducción de Señal
12.
J Forensic Leg Med ; 19(7): 396-401, 2012 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-22920762

RESUMEN

Understanding of molecular mechanisms underlying hypothermia is of primary importance in devising strategies to diagnose hypothermia. We investigated the hypothalamic transriptome in hypothermia. For transcriptomic analyses, SuperSAGE, an improved method of serial analysis of gene expression, was used. Totally, 62,208 and 54,084 tags were collected from the hypothalami of normal and hypothermia, respectively. And 367 transcripts were differentially expressed at a statistically significant level. That is, 157 and 210 transcripts among them were expressed at a higher level in normal and hypothermic hypothalami. Results obtained by SuperSAGE and quantitative PCR were consistent in 6 selected genes, although levels of differences detected by the 2 methods were not exactly the same. mRNA expressions in the hypothalamus were considered to be useful for hypothermic diagnosis. Various methods have been applied for gene expression analyses and biomarker detections. However in forensic pathology, SuperSAGE would be a promising method, especially in gene discoveries and transcriptomic analyses.


Asunto(s)
Perfilación de la Expresión Génica , Hipotálamo/metabolismo , Hipotermia/diagnóstico , Transcriptoma , Animales , Proteínas de Unión a Calmodulina/genética , Proteínas de Unión a Calmodulina/metabolismo , Proteínas Cromosómicas no Histona/genética , Proteínas Cromosómicas no Histona/metabolismo , Proteínas de Transporte de Dopamina a través de la Membrana Plasmática/genética , Proteínas de Transporte de Dopamina a través de la Membrana Plasmática/metabolismo , Etiquetas de Secuencia Expresada , Genética Forense , Patologia Forense , Proteínas del Choque Térmico HSC70/genética , Proteínas del Choque Térmico HSC70/metabolismo , Masculino , Proteínas del Tejido Nervioso/genética , Proteínas del Tejido Nervioso/metabolismo , Análisis de Secuencia por Matrices de Oligonucleótidos/métodos , Reacción en Cadena de la Polimerasa , ARN Mensajero/metabolismo , Ratas , Ratas Wistar , Triptófano Hidroxilasa/genética , Triptófano Hidroxilasa/metabolismo , Tirosina 3-Monooxigenasa/genética , Tirosina 3-Monooxigenasa/metabolismo
13.
J Neurol Sci ; 303(1-2): 43-9, 2011 Apr 15.
Artículo en Inglés | MEDLINE | ID: mdl-21306737

RESUMEN

The Ca(2+)/calmodulin complex interacts with and regulates various enzymes and target proteins known as calmodulin-binding proteins (CaMBPs). This group of proteins includes molecular motors such as myosins. In this study, we show that non-muscle myosin-IIB is overexpressed in the brains of diabetic rats. We isolated CaMBPs from the brains of non-diabetic rats and rats with streptozotocin-induced diabetes and purified them by immobilized-calmodulin affinity chromatography. The proteins were eluted with EGTA and urea, separated by SDS-PAGE, digested and submitted to peptide mass fingerprinting analysis. Thirteen intense bands were found in both types of brains, two were found exclusively in non-diabetic brains and four were found exclusively in diabetic brains. A large fraction of the eluted proteins contained putative IQ motifs or calmodulin-binding sites. The results of the myosin-IIB affinity chromatography elution, western blot and RT-PCR analyses suggest that myosin-IIB protein and mRNA are expressed at high levels in diabetic brains. This is the first study that has demonstrated differential expression of CaMBPs in diabetic and non-diabetic brain tissue through a comparative proteomic analysis, and it opens up a new approach to studying the relationship between the expression of myosins in the brain, hyperglycemia and intracellular calcium regulation.


Asunto(s)
Química Encefálica/fisiología , Diabetes Mellitus Experimental/metabolismo , Miosina Tipo IIB no Muscular/biosíntesis , Secuencia de Aminoácidos , Animales , Western Blotting , Proteínas de Unión a Calmodulina/metabolismo , Cromatografía de Afinidad , ADN Complementario/biosíntesis , ADN Complementario/genética , Electroforesis en Gel de Poliacrilamida , Inmunohistoquímica , Masculino , Datos de Secuencia Molecular , Biblioteca de Péptidos , Péptidos/química , ARN/biosíntesis , ARN/aislamiento & purificación , Ratas , Ratas Wistar , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción , Tripsina/química
14.
Science ; 330(6006): 968-71, 2010 Nov 12.
Artículo en Inglés | MEDLINE | ID: mdl-21071669

RESUMEN

During sexual reproduction in flowering plants such as Arabidopsis, a tip-growing pollen tube (PT) is guided to the synergid cells of the female gametophyte, where it bursts and releases the two sperm. Here we show that PT reception and powdery mildew (PM) infection, which involves communication between a tip-growing hypha and a plant epidermal cell, share molecular components. NORTIA (NTA), a member of the MLO family originally discovered in the context of PM resistance, and FERONIA (FER), a receptor-like kinase, both control PT reception in synergids. Homozygous fer mutants also display PM resistance, revealing a new function for FER and suggesting that conserved components, such as FER and distinct MLO proteins, are involved in both PT reception and PM infection.


Asunto(s)
Proteínas de Arabidopsis/metabolismo , Arabidopsis/microbiología , Arabidopsis/fisiología , Ascomicetos/fisiología , Proteínas de Unión a Calmodulina/metabolismo , Fosfotransferasas/metabolismo , Enfermedades de las Plantas/microbiología , Tubo Polínico/fisiología , Arabidopsis/genética , Proteínas de Arabidopsis/química , Proteínas de Arabidopsis/genética , Proteínas de Unión a Calmodulina/química , Proteínas de Unión a Calmodulina/genética , Fertilidad , Flores/genética , Perfilación de la Expresión Génica , Genes de Plantas , Hifa/fisiología , Mutación , Fosfotransferasas/genética , Hojas de la Planta/microbiología , Polen/genética , Polinización , Proteínas Recombinantes de Fusión/metabolismo , Semillas/crecimiento & desarrollo , Transducción de Señal , Esporas Fúngicas/fisiología , Transformación Genética
15.
Adv Exp Med Biol ; 661: 419-34, 2010.
Artículo en Inglés | MEDLINE | ID: mdl-20204746

RESUMEN

Pulmonary hypertension (PH) is a disorder characterized by vascular remodeling and proliferation, a phenotype dependent upon unimpeded growth factor and kinase pathway activation with strong similarities to malignant tumors. This chapter details our novel application of the multikinase inhibitor, sorafenib, in rodent models of PH to improved hemodynamic parameters and attenuates PH structural changes1. Sorafenib is a Raf kinase inhibitor and our biochemical and genomic evidence supported the potential involvement of the MAPK cascade system and TGFB3 in PH development and the response to therapy. Integration of expression genomic analyses coupled with intense bioinformatics identified gene expression and ontology signatures in the development of PH and implicated the role of cytoskeletal protein such as caldesmon or nmMLCK as potentially key participants in PH-induced vascular remodeling and proliferation. Our studies suggest the PKI sorafenib as a potentially novel treatment for severe PH with the MAPK cascade a potential canonical target profoundly effecting vascular cytoskeletal -rearrangements and remodeling1.


Asunto(s)
Bencenosulfonatos/uso terapéutico , Hipertensión Pulmonar/tratamiento farmacológico , Hipertensión Pulmonar/fisiopatología , Inhibidores de Proteínas Quinasas/uso terapéutico , Piridinas/uso terapéutico , Proteínas Tirosina Quinasas Receptoras/antagonistas & inhibidores , Animales , Bencenosulfonatos/farmacología , Proteínas de Unión a Calmodulina/genética , Proteínas de Unión a Calmodulina/metabolismo , Expresión Génica/efectos de los fármacos , Perfilación de la Expresión Génica , Hemodinámica/efectos de los fármacos , Humanos , Hipertensión Pulmonar/genética , Hipertensión Pulmonar/patología , Pulmón/irrigación sanguínea , Pulmón/patología , Pulmón/fisiopatología , Análisis por Micromatrices , Proteínas Quinasas Activadas por Mitógenos/metabolismo , Niacinamida/análogos & derivados , Compuestos de Fenilurea , Inhibidores de Proteínas Quinasas/farmacología , Piridinas/farmacología , Transducción de Señal/efectos de los fármacos , Sorafenib
16.
Brain Res ; 1228: 97-106, 2008 Sep 04.
Artículo en Inglés | MEDLINE | ID: mdl-18634768

RESUMEN

beta-Adducin is a cytoskeletal protein that interacts with the actin filaments to suppress actin polymerization and facilitate actin-spectrin binding. We have previously shown that beta-adducin is phosphorylated by Fyn at tyrosine489 in the rat brain and bound to its Src-homology 2 domain. In the present study, we examined the immunohistochemical localization of the tyrosine489-phosphorylated form of beta-adducin (pY489-beta-adducin) in the rat brain. Among brain regions, highest immunoreactivity was located in the hypothalamic tanycytes that are of glial origin lining around the third cerebral ventricle. Their immunoreactive processes extended into the arcuate nucleus, ventromedial hypothalamus and the median eminence. In addition, the pY489-beta-adducin immunoreactivity in the tanycytes was enhanced after fasting for 36-48 h, being associated with a morphological change of the DARPP-32-immunoreactivity. Intraperitoneal injection of 2-deoxy-d-glucose also enhances pY489-beta-adducin immunoreactivity in the tanycytes, along with increased food intake. These results suggest that tyrosine phosphorylation of beta-adducin in the tanycytes is involved in hypothalamic regulation of food intake and energy homeostasis.


Asunto(s)
Proteínas de Unión a Calmodulina/fisiología , Proteínas del Citoesqueleto/fisiología , Metabolismo Energético/fisiología , Hipotálamo/metabolismo , Animales , Núcleo Arqueado del Hipotálamo/metabolismo , Proteínas de Unión a Calmodulina/metabolismo , Ventrículos Cerebrales/metabolismo , Proteínas del Citoesqueleto/metabolismo , Desoxiglucosa/administración & dosificación , Desoxiglucosa/farmacología , Fosfoproteína 32 Regulada por Dopamina y AMPc/metabolismo , Ingestión de Alimentos/efectos de los fármacos , Ingestión de Alimentos/fisiología , Ayuno , Homeostasis/efectos de los fármacos , Hipotálamo/citología , Hipotálamo/efectos de los fármacos , Immunoblotting , Inmunohistoquímica , Inyecciones Intraperitoneales , Inyecciones Intraventriculares , Masculino , Eminencia Media/metabolismo , Fosfoproteínas/metabolismo , Fosfoproteínas/fisiología , Fosforilación , Ratas , Ratas Wistar , Tirosina/metabolismo
17.
J Struct Biol ; 163(1): 76-83, 2008 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-18513992

RESUMEN

Kinesins are molecular motors that power cell division and transport of various proteins and organelles. Their motor activity is driven by ATP hydrolysis and depends on interactions with microtubule tracks. Essential steps in kinesin movement rely on controlled alternate binding to and detaching from the microtubules. The conformational changes in the kinesin motors induced by nucleotide and microtubule binding are coordinated by structural elements within their motor domains. Loop L11 of the kinesin motor domain interacts with the microtubule and is implicated in both microtubule binding and sensing nucleotide bound to the active site of kinesin. Consistent with its proposed role as a microtubule sensor, loop L11 is rarely seen in crystal structures of unattached kinesins. Here, we report four structures of a regulated plant kinesin, the kinesin-like calmodulin binding protein (KCBP), determined by X-ray crystallography. Although all structures reveal the kinesin motor in the ATP-like conformation, its loop L11 is observed in different conformational states, both ordered and disordered. When structured, loop L11 adds three additional helical turns to the N-terminal part of the following helix alpha4. Although interactions with protein neighbors in the crystal support the ordering of loop L11, its observed conformation suggests the conformation for loop L11 in the microtubule-bound kinesin. Variations in the positions of other features of these kinesins were observed. A critical regulatory element of this kinesin, the calmodulin binding helix positioned at the C-terminus of the motor domain, is thought to confer negative regulation of KCBP. Calmodulin binds to this helix and inserts itself between the motor and the microtubule. Comparison of five independent structures of KCBP shows that the positioning of the calmodulin binding helix is not decided by crystal packing forces but is determined by the conformational state of the motor. The observed variations in the position of the calmodulin binding helix fit the regulatory mechanism previously proposed for this kinesin motor.


Asunto(s)
Proteínas de Unión a Calmodulina/química , Cinesinas/química , Microtúbulos/metabolismo , Proteínas Motoras Moleculares/química , Proteínas de Plantas/química , Sitios de Unión , Proteínas de Unión a Calmodulina/metabolismo , Proteínas de Unión a Calmodulina/fisiología , Cristalografía por Rayos X , Cinesinas/metabolismo , Proteínas de Plantas/fisiología , Conformación Proteica , Solanum tuberosum
18.
J Histochem Cytochem ; 56(4): 359-70, 2008 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-18071063

RESUMEN

Arteries undergo marked structural and functional changes in human and experimental hypertension that generally involve smooth muscle cell (SMC) hypertrophy/hyperplasia as well as abnormal extracellular matrix turnover. In this study we examined time courses of changes in SMC activity and matrix protein content in a novel mini-pig aortic coarctation model. Cell proliferation was evaluated by immunostaining of Ki-67, apoptosis was assessed by TUNEL, and phenotypic changes were monitored by immunostaining three SMC contractile markers (caldesmon, calponin, and smoothelin). Changes in medial collagen and elastin were examined by picrosirius red and Verhoeff-van Gieson staining, respectively. LabVIEW-based image analysis routines were developed to objectively and efficiently quantify the (immuno)histochemical results. We found that significant cell proliferation and matrix production occurred in the early stages of this coarctation model and then declined gradually; the SMCs also tended to exhibit a less contractile phenotype following these cellular and extracellular changes. Specifically, different aspects of the phenotypic changes associated with hypertension occurred at different rates: cell proliferation and collagen production occurred early and peaked by 2 weeks, whereas changes in contractile protein expression continued to decrease over the entire 8-week study period. Temporal changes found in this study emphasize the importance of simultaneously tracing time courses of SMC growth and differentiation as well as matrix protein production and content. SMCs are multifunctional, and caution must be used to not overdefine phenotype. This manuscript contains online supplemental material at http://www.jhc.org. Please visit this article online to view these materials.


Asunto(s)
Aorta/patología , Hipertensión/patología , Miocitos del Músculo Liso/patología , Actinas/metabolismo , Animales , Aorta/metabolismo , Apoptosis , Proteínas de Unión al Calcio/metabolismo , Proteínas de Unión a Calmodulina/metabolismo , Proliferación Celular , Colágeno/metabolismo , Interpretación Estadística de Datos , Proteínas de la Matriz Extracelular/metabolismo , Hipertensión/metabolismo , Procesamiento de Imagen Asistido por Computador , Inmunohistoquímica , Etiquetado Corte-Fin in Situ , Antígeno Ki-67/metabolismo , Proteínas de Microfilamentos/metabolismo , Proteínas Musculares/metabolismo , Miocitos del Músculo Liso/metabolismo , Programas Informáticos , Porcinos , Porcinos Enanos , Factores de Tiempo , Calponinas
19.
Biochemistry ; 45(41): 12547-59, 2006 Oct 17.
Artículo en Inglés | MEDLINE | ID: mdl-17029410

RESUMEN

Calcium-saturated calmodulin (CaM) binds and influences the activity of a varied collection of target proteins in most cells. This promiscuity underlies the role of CaM as a shared participant in calcium-dependent signal transduction pathways but imposes a handicap on popular CaM-based calcium biosensors, which display an undesired tendency to cross-react with cellular proteins. Designed CaM/target pairs that retain high affinity for one another but lack affinity for wild-type CaM and its natural interaction partners would therefore be useful as sensor components and possibly also as elements of "synthetic" cellular-signaling networks. Here, we have adopted a rational approach to creating suitably modified CaM/target complexes by using computational design methods to guide parallel site-directed mutagenesis of both binding partners. A hierarchical design procedure was applied to suggest a small number of complementary mutations on CaM and on a peptide ligand derived from skeletal-muscle light-chain kinase (M13). Experimental analysis showed that the procedure was successful in identifying CaM and M13 mutants with novel specificity for one another. Importantly, the designed complexes retained an affinity comparable to the wild-type CaM/M13 complex. These results represent a step toward the creation of CaM and M13 derivatives with specificity fully orthogonal to the wild-type proteins and show that qualitatively accurate predictions may be obtained from computational methods applied simultaneously to two proteins involved in multiple-linked binding equilibria.


Asunto(s)
Proteínas de Unión a Calmodulina/genética , Proteínas de Unión a Calmodulina/metabolismo , Calmodulina/genética , Calmodulina/metabolismo , Péptidos/genética , Péptidos/metabolismo , Secuencia de Aminoácidos , Animales , Señalización del Calcio , Calmodulina/química , Proteínas de Unión a Calmodulina/química , Diseño de Fármacos , Técnicas In Vitro , Modelos Moleculares , Datos de Secuencia Molecular , Mutagénesis Sitio-Dirigida , Quinasa de Cadena Ligera de Miosina/química , Quinasa de Cadena Ligera de Miosina/genética , Quinasa de Cadena Ligera de Miosina/metabolismo , Fragmentos de Péptidos/química , Fragmentos de Péptidos/genética , Fragmentos de Péptidos/metabolismo , Péptidos/química , Unión Proteica , Conformación Proteica , Ingeniería de Proteínas , Estructura Terciaria de Proteína , Conejos , Termodinámica
20.
Eur J Neurosci ; 23(1): 55-64, 2006 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-16420415

RESUMEN

Teas represent a large family of plants containing high amounts of polyphenols that may confer health benefits in various diseases. Recently, it has been hypothesized that tea consumption may also reduce the risk of age-related neurodegenerative pathologies. Considering the deleterious role of beta-amyloid (Abeta) in the aetiology of Alzheimer's disease (AD), we investigated green and black tea extracts and flavan-3-ols (present as monomers and dimers in green and black forms, respectively) against toxicity induced by Abeta-derived peptides using primary cultures of rat hippocampal cells as model. Both green and black tea extracts (5-25 microg/mL) displayed neuroprotective action against Abeta toxicity. These effects were shared by gallic acid (1-20 microm), epicatechin gallate (ECG; 1-20 microM) and epigallocatechin gallate (EGCG; 1-10 microM), the former being the most potent flavan-3-ol. In contrast, epicatechin and epigallocatechin were ineffective in the same range of concentrations. Moreover, only tea flavan-3-ol gallate esters (i.e. ECG, EGCG) and gallic acid inhibited apoptotic events induced by Abeta(25-35). Interestingly, EGCG and gallic acid inhibited Abeta aggregation and/or the formation of Abeta-derived diffusible neurotoxin ligands. Taken together, these results indicate that the catechin gallates (through the galloyl moiety) contribute to the neuroprotective effects of both green and black teas. Moreover, the protective effect of EGCG is likely to be associated, at least in part, with its inhibitory action on Abeta fibrils/oligomers formation. These data also support the hypothesis that not only green but also black teas may reduce age-related neurodegenerative diseases, such as AD.


Asunto(s)
Péptidos beta-Amiloides/toxicidad , Catequina/análogos & derivados , Flavonoides/farmacología , Neuronas/efectos de los fármacos , Fármacos Neuroprotectores/farmacología , Péptidos beta-Amiloides/antagonistas & inhibidores , Análisis de Varianza , Animales , Bencimidazoles , Proteínas de Unión a Calmodulina/metabolismo , Catequina/química , Catequina/farmacología , Células Cultivadas , Relación Dosis-Respuesta a Droga , Interacciones Farmacológicas , Embrión de Mamíferos , Fluoroinmunoensayo/métodos , Hipocampo/citología , Fármacos Neuroprotectores/química , Fragmentos de Péptidos/antagonistas & inhibidores , Fragmentos de Péptidos/toxicidad , Extractos Vegetales/farmacología , Ratas , Ratas Sprague-Dawley , Especies Reactivas de Oxígeno/metabolismo , Sales de Tetrazolio , Tiazoles
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