Fluorescent Organic Nanoaggregates for Selective Recognition of d-(-)-Ribose in Biological Fluids and Oral Supplements.

Easily synthesizable, fluorescent, organic nanoaggregates have been utilized, for the first time, in the selective recognition of d-(-)-ribose at pH 5.5 in water. In the self-assembled form, the reactive sites of the monomer units can be properly organized to form an effective "recognition cleft" for ribose (limit of detection ≈23 µm), in which binding mainly occurs through a combination of hydrogen-bonding and CH⋅⋅⋅π interactions. The degree of agglomeration shows a profound influence on the extent of ribose sensing. A reduction in the optical response (≈1.8-fold) is observed when ribose is allowed to interact with nanoaggregates of smaller dimensions (a decrease in the hydrodynamic diameter from (≈212.7±10.2) to (≈44.6±3.5) nm). The protocol is also utilized for the estimation of ribose in human urine samples and oral supplements. Low-cost paper strips have also been developed for rapid, on-site detection of ribose without involving any sophisticated instruments or skilled personnel.

Elucidation of the mechanism of ribose conjugation in a pyrazole-containing compound in rodent liver.

1. Here we report on the mechanism of ribose conjugation, through NADH as a cofactor, of a pyrazole-containing compound (PT). Incubation of PT in rat liver microsomes supplemented with NADP⁺/H, NAD⁺/H, and ß-nicotinamide mononucleotide (NMN) resulted in complete conjugation to the adenine dinucleotide phosphate conjugate (ADP-C), adenine dinucleotide conjugate (AD-C), and 5-phosphoribose conjugate (Rib-C1), respectively. In hepatocytes, PT predominantly formed three ribose conjugates: Rib-C1, the ribose conjugate (Rib-C2), and the carboxylic acid of Rib-C2 (Rib-C3). 2. Phosphatase inhibitors were added to hepatocyte incubations. AD-C was detected in this reaction, which suggests that one of the major pathways for the formation of the ribose conjugates is through NAD⁺/H. When AD-C was incubated with phosphatase, Rib-C1 and Rib-C2 formed. 3. To understand the in vivo relevance of this metabolic pathway, rats were dosed with PT and Rib-C2 was found in the urine. 4. Structure-activity relationship shows that replacement of the distal thiazole group in the PT to a phenyl group abolishes this conjugation. Three amino acid residues in the active site preferentially interact with the sulfur atom in the thiazole of PT. 5. In summary, PT forms direct AD-C in hepatocytes, which is further hydrolyzed by phosphatase to give ribose conjugates.