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1.
mSphere ; 9(2): e0077123, 2024 Feb 28.
Artículo en Inglés | MEDLINE | ID: mdl-38319113

RESUMEN

The bacteria within supragingival biofilms participate in complex exchanges with other microbes inhabiting the same niche. One example is the mutans group streptococci (Streptococcus mutans), implicated in the development of tooth decay, and other health-associated commensal streptococci species. Previously, our group transcriptomically characterized intermicrobial interactions between S. mutans and several species of oral bacteria. However, these experiments were carried out in a medium without human saliva. To better mimic their natural environment, we first evaluated how inclusion of saliva affected growth and biofilm formation of eight Streptococcus species individually and found saliva to positively benefit growth rates while negatively influencing biofilm biomass accumulation and altering spatial arrangement. These results carried over during evaluation of 29 saliva-derived isolates of various species. Surprisingly, we also found that addition of saliva increased the competitive behaviors of S. mutans in coculture competitions against commensal streptococci that led to increases in biofilm microcolony volumes. Through transcriptomically characterizing mono- and cocultures of S. mutans and Streptococcus oralis with and without saliva, we determined that each species developed a nutritional niche under mixed-species growth, with S. mutans upregulating carbohydrate uptake and utilization pathways while S. oralis upregulated genome features related to peptide uptake and glycan foraging. S. mutans also upregulated genes involved in oxidative stress tolerance, particularly manganese uptake, which we could artificially manipulate by supplementing in manganese leading to an advantage over its opponent. Our report highlights observable changes in microbial behaviors through leveraging environmental- and host-supplied resources over their competitors. IMPORTANCE: Dental caries (tooth decay) is the most prevalent disease for both children and adults nationwide. Caries are initiated from demineralization of the enamel due to organic acid production through the metabolic activity of oral bacteria growing in biofilm communities attached to the tooth's surface. Mutans group streptococci are closely associated with caries development and initiation of the cariogenic cycle, which decreases the amount of acid-sensitive, health-associated commensal bacteria while selecting for aciduric and acidogenic species that then further drives the disease process. Defining the exchanges that occur between mutans group streptococci and oral commensals in a condition that closely mimics their natural environment is of critical need toward identifying factors that can influence odontopathogen establishment, persistence, and outgrowth. The goal of our research is to develop strategies, potentially through manipulation of microbial interactions characterized here, that prevent the emergence of mutans group streptococci while keeping the protective flora intact.


Asunto(s)
Caries Dental , Saliva , Niño , Humanos , Saliva/microbiología , Conducta Competitiva , Manganeso/metabolismo , Streptococcus/genética , Streptococcus mutans/genética , Streptococcus mutans/metabolismo , Biopelículas
2.
Microbiol Spectr ; 11(3): e0512922, 2023 06 15.
Artículo en Inglés | MEDLINE | ID: mdl-37014220

RESUMEN

Streptococcus mitis is a normal member of the human oral microbiota and a leading opportunistic pathogen causing infective endocarditis (IE). Despite the complex interactions between S. mitis and the human host, understanding of S. mitis physiology and its mechanisms of adaptation to host-associated environments is inadequate, especially compared with other IE bacterial pathogens. This study reports the growth-promoting effects of human serum on S. mitis and other pathogenic streptococci, including S. oralis, S. pneumoniae, and S. agalactiae. Using transcriptomic analyses, we identified that, with the addition of human serum, S. mitis downregulates uptake systems for metal ions and sugars, fatty acid biosynthetic genes, and genes involved in stress response and other processes related with growth and replication. S. mitis upregulates uptake systems for amino acids and short peptides in response to human serum. Zinc availability and environmental signals sensed by the induced short peptide binding proteins were not sufficient to confer the growth-promoting effects. More investigation is required to establish the mechanism for growth promotion. Overall, our study contributes to the fundamental understanding of S. mitis physiology under host-associated conditions. IMPORTANCE S. mitis is exposed to human serum components during commensalism in the human mouth and bloodstream pathogenesis. However, the physiological effects of serum components on this bacterium remain unclear. Using transcriptomic analyses, S. mitis biological processes that respond to the presence of human serum were revealed, improving the fundamental understanding of S. mitis physiology in human host conditions.


Asunto(s)
Fenómenos Biológicos , Endocarditis , Humanos , Streptococcus mitis/genética , Streptococcus mitis/metabolismo , Transcriptoma , Streptococcus/genética , Streptococcus pneumoniae/genética , Endocarditis/microbiología , Suplementos Dietéticos
3.
Microbiol Spectr ; 9(2): e0029921, 2021 10 31.
Artículo en Inglés | MEDLINE | ID: mdl-34643411

RESUMEN

Bovine mastitis infection in dairy cattle is a significant economic burden for the dairy industry globally. To reduce the use of antibiotics in treatment of clinical mastitis, new alternative treatment options are needed. Antimicrobial peptides from bacteria, also known as bacteriocins, are potential alternatives for combating mastitis pathogens. In search of novel bacteriocins against mastitis pathogens, we screened samples of Norwegian bovine raw milk and found a Streptococcus uberis strain with potent antimicrobial activity toward Enterococcus, Streptococcus, Listeria, and Lactococcus. Whole-genome sequencing of the strain revealed a multibacteriocin gene cluster encoding one class IIb bacteriocin, two class IId bacteriocins, in addition to a three-component regulatory system and a dedicated ABC transporter. Isolation and purification of the antimicrobial activity from culture supernatants resulted in the detection of a 6.3-kDa mass peak by matrix-assisted laser desorption ionization-time of flight (MALDI-TOF) mass spectrometry, a mass corresponding to the predicted size of one of the class IId bacteriocins. The identification of this bacteriocin, called ubericin K, was further confirmed by in vitro protein synthesis, which showed the same inhibitory spectrum as the purified antimicrobial compound. Ubericin K shows highest sequence similarity to the class IId bacteriocins bovicin 255, lactococcin A, and garvieacin Q. We found that ubericin K uses the sugar transporter mannose phosphotransferase (PTS) as a target receptor. Further, by using the pHlourin sensor system to detect intracellular pH changes due to leakage across the membrane, ubericin K was shown to be a pore former, killing target cells by membrane disruption. IMPORTANCE Bacterial infections in dairy cows are a major burden to farmers worldwide because infected cows require expensive treatments and produce less milk. Today, infected cows are treated with antibiotics, a practice that is becoming less effective due to antibiotic resistance. Compounds other than antibiotics also exist that kill bacteria causing infections in cows; these compounds, known as bacteriocins, are natural products produced by other bacteria in the environment. In this work, we discover a new bacteriocin that we call ubericin K, which kills several species of bacteria known to cause infections in dairy cows. We also use in vitro synthesis as a novel method for rapidly characterizing bacteriocins directly from genomic data, which could be useful for other researchers. We believe that ubericin K and the methods described in this work will aid in the transition away from antibiotics in the dairy industry.


Asunto(s)
Antibacterianos/uso terapéutico , Bacteriocinas/uso terapéutico , Enfermedades de los Bovinos/tratamiento farmacológico , Mastitis Bovina/tratamiento farmacológico , Streptococcus/metabolismo , Animales , Membrana Externa Bacteriana/efectos de los fármacos , Membrana Externa Bacteriana/patología , Bacteriocinas/genética , Bovinos , Enfermedades de los Bovinos/microbiología , Enterococcus/efectos de los fármacos , Enterococcus/crecimiento & desarrollo , Femenino , Lactococcus/efectos de los fármacos , Lactococcus/crecimiento & desarrollo , Listeria/efectos de los fármacos , Listeria/crecimiento & desarrollo , Mastitis Bovina/microbiología , Pruebas de Sensibilidad Microbiana , Fosfotransferasas/metabolismo , Percepción de Quorum , Streptococcus/genética
4.
J Biosci ; 462021.
Artículo en Inglés | MEDLINE | ID: mdl-34148877

RESUMEN

Diagnosis and treatment of various diseases in Ayurveda, the Indian system of medicine, relies on 'prakriti' phenotyping of individuals into predominantly three constitutions, kapha, pitta and vata. Recent studies propose that microbiome play an integral role in precision medicine. A study of the relationship between prakriti - the basis of personalized medicine in Ayurveda and that of gut microbiome, and possible biomarker of an individual's health, would vastly improve precision therapy. Towards this, we analyzed bacterial metagenomes from buccal (oral microbiome) and fecal (gut microbiome) samples of 272 healthy individuals of various predominant prakritis. Major bacterial genera from gut microbiome included Prevotella, Bacteroides and Dialister while oral microbiome included Streptococcus, Neisseria, Veilonella, Haemophilus, Porphyromonas and Prevotella. Though the core microbiome was shared across all individuals, we found prakriti specific signatures such as preferential presence of Paraprevotella and Christensenellaceae in vata individuals. A comparison of core gut microbiome of each prakriti with a database of 'healthy' microbes identified microbes unique to each prakriti with functional roles similar to the physiological characteristics of various prakritis as described in Ayurveda. Our findings provide evidence to Ayurvedic interventions based on prakriti phenotyping and possible microbial biomarkers that can stratify the heterogenous population and aid in precision therapy.


Asunto(s)
Medicina Ayurvédica/métodos , Metagenoma , Medicina de Precisión/métodos , Simbiosis/fisiología , Adulto , Técnicas de Tipificación Bacteriana , Bacteroides/clasificación , Bacteroides/genética , Bacteroides/aislamiento & purificación , ADN Bacteriano/genética , Heces/microbiología , Femenino , Microbioma Gastrointestinal/genética , Haemophilus/clasificación , Haemophilus/genética , Haemophilus/aislamiento & purificación , Voluntarios Sanos , Humanos , Masculino , Boca/microbiología , Neisseria/clasificación , Neisseria/genética , Neisseria/aislamiento & purificación , Filogenia , Porphyromonas/clasificación , Porphyromonas/genética , Porphyromonas/aislamiento & purificación , Prevotella/clasificación , Prevotella/genética , Prevotella/aislamiento & purificación , Streptococcus/clasificación , Streptococcus/genética , Streptococcus/aislamiento & purificación , Veillonella/clasificación , Veillonella/genética , Veillonella/aislamiento & purificación , Veillonellaceae/clasificación , Veillonellaceae/genética , Veillonellaceae/aislamiento & purificación
5.
J Sci Food Agric ; 100(4): 1806-1811, 2020 Mar 15.
Artículo en Inglés | MEDLINE | ID: mdl-31858598

RESUMEN

BACKGROUND: The accumulation of oral bacterial biofilms is one of the primary etiological factors for oral diseases. Aronia melanocarpa extracts display general health benefits, including antimicrobial activities. This study evaluates the inhibitory effect of Aronia juice on oral streptococcal biofilm formation. RESULTS: Exposure to 1/10-diluted Aronia juice for 1 min significantly decreased in vitro streptococcal biofilm formation (P < 0.001). No remarkable difference was noted in streptococcal growth by Aronia under the same conditions. Interestingly, 1 week of oral rinse with diluted Aronia juice led to significantly fewer salivary streptococcal colony-forming units (CFUs) relative to oral rinsing with tap water (P < 0.05). Furthermore, Aronia exerted an extracellular RNA-degrading effect, and RNase inhibitor alleviated Aronia-dependent streptococcal biofilm inhibition. CONCLUSION: Aronia might inhibit initial biofilm formation by decomposing extracellular RNA, which plays an important role in bacterial biofilm formation. Our data suggest that oral rinsing with Aronia juice will aid in treating oral biofilm-dependent diseases easily and efficiently. © 2019 Society of Chemical Industry.


Asunto(s)
Antibacterianos/farmacología , Biopelículas/efectos de los fármacos , Photinia/química , Extractos Vegetales/farmacología , ARN Bacteriano/metabolismo , Streptococcus/efectos de los fármacos , Antibacterianos/aislamiento & purificación , Extractos Vegetales/aislamiento & purificación , ARN Bacteriano/genética , Streptococcus/genética , Streptococcus/crecimiento & desarrollo , Streptococcus/fisiología
6.
Microb Drug Resist ; 25(3): 421-426, 2019 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-30328745

RESUMEN

BACKGROUND: Streptococcus thoraltensis was first isolated from pigs and rabbits. Later, isolation from human oral and nasal cavities and from throat and oropharynx was documented. S. thoraltensis was isolated from patients with periodontitis, tonsillopharyngitis, and chorioamnionitis suggesting a possible pathological role in human infections. All S. thoraltensis isolates of animal and human origins were sensitive to vancomycin. METHODS: Standard microbiological identification methods, biochemical analysis, and antibiotic susceptibility testing using disk diffusion and E methods were used. Automatic species identification and antibiotic susceptibility testing were carried out using the Vitek 2 compact system. Molecular analysis of vancomycin resistance gene was carried out using a PCR with specific primers for vanA. RESULTS: We report a healthy young female adult, aged 19 years, with history of exposure to pet rabbit who had nasal colonization with S. thoraltensis. Identification of S. thoraltensis was based on traditional microbiological methods (culture, Gram stain, and biochemical tests), and the Vitek 2 compact system with 97% confidence rate. Antibiotic susceptibility testing of the isolate indicated resistance to most antibiotics, including penicillins, cephalosporins, methicillin, and glycopeptides. The minimal inhibitory concentration for vancomycin and teicoplanin was exceptionally high (>256 µg/mL). Molecular analysis indicated the absence of vanA gene in S. thoraltensis. CONCLUSION: We report for the first time the isolation of a fully vancomycin-resistant S. thoraltensis independent of vanA from a healthy human anterior nasal cavity. The pathological role of this newly identified organism with an exceptionally rare resistance pattern in human infections is yet to be identified.


Asunto(s)
Cavidad Nasal/microbiología , Infecciones Estafilocócicas/microbiología , Streptococcus/aislamiento & purificación , Resistencia a la Vancomicina/genética , Vancomicina/uso terapéutico , Adulto , Animales , Antibacterianos/uso terapéutico , Proteínas Bacterianas/genética , Ligasas de Carbono-Oxígeno/genética , Femenino , Humanos , Pruebas de Sensibilidad Microbiana/métodos , Mascotas/microbiología , Conejos , Infecciones Estafilocócicas/tratamiento farmacológico , Streptococcus/efectos de los fármacos , Streptococcus/genética , Adulto Joven
7.
Chem Biol Drug Des ; 92(6): 1940-1953, 2018 12.
Artículo en Inglés | MEDLINE | ID: mdl-30010233

RESUMEN

Lantibiotics represent a large untapped pipeline of attractive scaffolds for the development of novel antibiotics. Saturation mutagenesis was employed to substitute every amino acid of a lantibiotic called mutacin 1140 (MU1140), creating an unbiased expression library of 418 variants that was used to study the permissiveness to mutagenesis and the "drugability" of several compounds. Contrasting previous reports, the results from this study supported that not all residues involved in lanthionine bridge formation were critical for maintaining optimal activity. While substitutions in lanthionine bridges in Ring A, C, and D invariably lead to inactive variants, permissive substitutions in Abu8 and Ala11 (Ring B) were observed, albeit infrequently. Further, the data generated suggested that the unsaturated bond from Dha5 (Ser5) may not be critically involved in Lipid-II binding but still important for conferring optimal activity. This study identified additional permissive mutations of Ser5, including Ser5His, Ser5Met, Ser5Gln, and Ser5Leu. In contrast, no permissive substitutions were identified for Dhb14, which suggested that this residue may be critical for optimal activity. Novel blueprints are proposed for directing further development of MU1140 variants and other lantibiotics, which may enable the rational design, development, manufacture, and formulation of an entirely new class of anti-infectives.


Asunto(s)
Bacteriocinas/metabolismo , Péptidos/metabolismo , Secuencia de Aminoácidos , Bacteriocinas/genética , Bacteriocinas/farmacología , Biblioteca de Genes , Pruebas de Sensibilidad Microbiana , Mutagénesis Sitio-Dirigida , Péptidos/genética , Péptidos/farmacología , Plásmidos/genética , Plásmidos/metabolismo , Streptococcus/química , Streptococcus/genética , Streptococcus/metabolismo , Relación Estructura-Actividad
8.
Food Res Int ; 106: 428-438, 2018 04.
Artículo en Inglés | MEDLINE | ID: mdl-29579944

RESUMEN

Black garlic is a distinctive garlic deep-processed product made from fresh garlic at high temperature and controlled humidity. To explore microbial community structure, diversity and metabolic potential during the 12days of the black garlic processing, Illumina MiSeq sequencing technology was performed to sequence the 16S rRNA V3-V4 hypervariable region of bacteria. A total of 677,917 high quality reads were yielded with an average read length of 416bp. Operational taxonomic units (OTU) clustering analysis showed that the number of species OTUs ranged from 148 to 1974, with alpha diversity increasing remarkably, indicating the high microbial community abundance and diversity. Taxonomic analysis indicated that bacterial community was classified into 45 phyla and 1125 distinct genera, and the microbiome of black garlic samples based on phylogenetic analysis was dominated by distinct populations of four genera: Thermus, Corynebacterium, Streptococcus and Brevundimonas. The metabolic pathways were predicted for 16S rRNA marker gene sequences based on Kyoto Encyclopedia of Genes and Genomes (KEGG), indicating that amino acid metabolism, carbohydrate metabolism and membrane transport were important for the black garlic fermentation process. Overall, the study was the first to reveal microbial community structure and speculate the composition of functional genes in black garlic samples. The results contributed to further analysis of the interaction between microbial community and black garlic components at different stages, which was of great significance to study the formation mechanism and quality improvement of black garlic in the future.


Asunto(s)
Bacterias/aislamiento & purificación , Fermentación , Manipulación de Alimentos/métodos , Microbiología de Alimentos/métodos , Ajo/microbiología , Microbiota , Raíces de Plantas/microbiología , Bacterias/clasificación , Bacterias/genética , Bacterias/metabolismo , Corynebacterium/genética , Corynebacterium/aislamiento & purificación , Corynebacterium/metabolismo , Fermentación/genética , Secuenciación de Nucleótidos de Alto Rendimiento , Calor , Humedad , Microbiota/genética , Filogenia , Ribotipificación , Streptococcus/genética , Streptococcus/aislamiento & purificación , Streptococcus/metabolismo , Thermus/genética , Thermus/aislamiento & purificación , Thermus/metabolismo
9.
Cell Biochem Biophys ; 76(1-2): 293-301, 2018 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-27796789

RESUMEN

MicroRNAs in eukaryotic cells are thought to control highly complex signal transduction and other biological processes by regulating coding transcripts, accounting for their important role in cellular events in eukaryotes. Recently, a novel class of bacterial RNAs similar in size [18-22 nucleotides (nt)] to microRNAs has been reported. Herein, we describe microRNAs, small RNAs from the oral pathogen Streptococcus sanguinis. The bacteria are normally present in the oral cavities and cause endocarditis by contaminating bloodstreams. Small RNAs were analyzed by deep sequencing. Selected highly expressed small RNAs were further validated by real-time polymerase chain reaction and northern blot analyses. We found that skim milk supplement changed the expression of small RNAs S.S-1964 in tandem with the nearby SSA_0513 gene involved in vitamin B12 conversion. We furthermore observed small RNAs secreted via bacterial membrane vesicles. Although their precise function remains unclear, secretable small RNAs may represent an entirely new area of study in bacterial genetics.


Asunto(s)
ARN Bacteriano/aislamiento & purificación , Streptococcus/genética , Northern Blotting , Biología Computacional , Vesículas Citoplasmáticas/genética , Vesículas Citoplasmáticas/metabolismo , Bases de Datos Genéticas , Regulación Bacteriana de la Expresión Génica/efectos de los fármacos , Secuenciación de Nucleótidos de Alto Rendimiento , Conformación de Ácido Nucleico , ARN Bacteriano/química , ARN Bacteriano/metabolismo , Reacción en Cadena en Tiempo Real de la Polimerasa , Análisis de Secuencia de ARN , Streptococcus/metabolismo , Vitamina B 12/farmacología
11.
Clin Infect Dis ; 61 Suppl 2: S58-68, 2015 Sep 15.
Artículo en Inglés | MEDLINE | ID: mdl-26316559

RESUMEN

Telavancin is a semisynthetic lipoglycopeptide derivative of vancomycin. Telavancin has a dual mechanism of antibacterial action, disrupting peptidoglycan synthesis and cell membrane function. In 2014, the Clinical and Laboratory Standards Institute (CLSI) revised the antimicrobial susceptibility testing method for telavancin, resulting in minimum inhibitory concentration (MIC) determinations that are more accurate and reproducible and demonstrate greater in vitro potency than shown with the previous testing method. The CLSI testing method changes coincided with revised telavancin MIC interpretive break point criteria for susceptibility approved by the US Food and Drug Administration for Staphylococcus aureus (≤0.12 µg/mL), Streptococcus pyogenes (≤0.12 µg/mL), Streptococcus agalactiae (≤0.12 µg/mL), Streptococcus anginosus group (≤0.06 µg/mL), and Enterococcus faecalis (vancomycin susceptible, ≤0.25 µg/mL). Telavancin is equally potent against methicillin-susceptible S. aureus (MSSA) and methicillin-resistant S. aureus (MRSA). It demonstrates activity against isolates of heterogeneous vancomycin-intermediate S. aureus and vancomycin-intermediate S. aureus but is poorly active against vancomycin-resistant S. aureus. It also demonstrates potent activity against Staphylococcus epidermidis and Streptococcus spp. (MIC90 ≤0.03 µg/mL). Thus far, it has not been possible to select for high-level telavancin resistance in the laboratory using serially passaged clinical isolates of MRSA and MSSA.


Asunto(s)
Aminoglicósidos/farmacología , Aminoglicósidos/uso terapéutico , Antibacterianos/farmacología , Antibacterianos/uso terapéutico , Farmacorresistencia Bacteriana , Bacterias Grampositivas/efectos de los fármacos , Farmacorresistencia Bacteriana/genética , Enterococcus/efectos de los fármacos , Enterococcus/genética , Infecciones por Bacterias Grampositivas/tratamiento farmacológico , Infecciones por Bacterias Grampositivas/microbiología , Humanos , Lipoglucopéptidos , Staphylococcus aureus Resistente a Meticilina/efectos de los fármacos , Pruebas de Sensibilidad Microbiana , Infecciones Estafilocócicas/tratamiento farmacológico , Infecciones Estafilocócicas/microbiología , Staphylococcus/efectos de los fármacos , Staphylococcus/genética , Streptococcus/efectos de los fármacos , Streptococcus/genética
13.
Int J Syst Evol Microbiol ; 64(Pt 5): 1775-1781, 2014 May.
Artículo en Inglés | MEDLINE | ID: mdl-24573159

RESUMEN

A polyphasic study was undertaken to clarify the taxonomic position of Streptococcus phocae strains isolated from Atlantic salmon (Salmo salar) cage-farmed in Chile. Four salmon and three seal isolates showed minor differences in the SDS-PAGE protein analysis. Thus, a major protein band present in the salmon isolates, of approximately 22.4 kDa, was absent in the pinniped strains, regardless of the growth media employed. In addition, the pinniped strains showed protein bands with molecular masses of 71.5 and 14.2 kDa, when grown on trypticase soy agar supplemented with 1% NaCl, or 25.6 kDa, when grown on Columbia blood agar, not present in the Atlantic salmon strains. A high similarity in the matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF) MS spectra of the strains was observed, although some minor peaks were absent in the fish isolates. Fatty acid methyl esters from isolates with different host origin significantly (P<0.05) differed in the content of C16:0, C17:0, C18:1ω9c, C20:4ω6,9,12,15c and summed features 3, 5 and 8. The salmon isolates formed a separate cluster in the phylogenetic analysis of housekeeping genes, separately or as concatenated sequences. Sequence divergences among salmon and seal strains were in the range of inter-subspecies differentiation for groEL (2.5%), gyrB (1.8%), recN (2.1%), rpoB (1.7%) and sodA (2.0%) genes. DNA-DNA hybridization results confirmed those of sequencing, showing reassociation values between seal and salmon strains close to the borderline of species definition. Differences in growth at low temperatures and in the haemolytic capacities were also observed between both groups of isolates. On the basis of all these results, the salmon isolates represent a novel subspecies of S. phocae, for which the name Streptococcus phocae subsp. salmonis subsp. nov. is proposed. The type strain is C-4T (=CECT 7921T=DSM 24768T). The subspecies Streptococcus phocae subsp. phocae subsp. nov. is automatically created. An emended description of S. phocae is also provided.


Asunto(s)
Caniformia/microbiología , Filogenia , Salmo salar/microbiología , Streptococcus/clasificación , Animales , Técnicas de Tipificación Bacteriana , Chile , ADN Bacteriano/genética , Ácidos Grasos/química , Genes Bacterianos , Datos de Secuencia Molecular , Hibridación de Ácido Nucleico , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN , Streptococcus/genética , Streptococcus/aislamiento & purificación
14.
Appl Environ Microbiol ; 80(8): 2351-9, 2014 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-24487543

RESUMEN

Metal homeostasis plays a critical role in antioxidative stress. Streptococcus oligofermentans, an oral commensal facultative anaerobe lacking catalase activity, produces and tolerates abundant H2O2, whereas Dpr (an Fe(2+)-chelating protein)-dependent H2O2 protection does not confer such high tolerance. Here, we report that inactivation of perR, a peroxide-responsive repressor that regulates zinc and iron homeostasis in Gram-positive bacteria, increased the survival of H2O2-pulsed S. oligofermentans 32-fold and elevated cellular manganese 4.5-fold. perR complementation recovered the wild-type phenotype. When grown in 0.1 to 0.25 mM MnCl2, S. oligofermentans increased survival after H2O2 stress 2.5- to 23-fold, and even greater survival was found for the perR mutant, indicating that PerR is involved in Mn(2+)-mediated H2O2 resistance in S. oligofermentans. Mutation of mntA could not be obtained in brain heart infusion (BHI) broth (containing ~0.4 µM Mn(2+)) unless it was supplemented with ≥2.5 µM MnCl2 and caused 82 to 95% reduction of the cellular Mn(2+) level, while mntABC overexpression increased cellular Mn(2+) 2.1- to 4.5-fold. Thus, MntABC was identified as a high-affinity Mn(2+) transporter in S. oligofermentans. mntA mutation reduced the survival of H2O2-pulsed S. oligofermentans 5.7-fold, while mntABC overexpression enhanced H2O2-challenged survival 12-fold, indicating that MntABC-mediated Mn(2+) uptake is pivotal to antioxidative stress in S. oligofermentans. perR mutation or H2O2 pulsing upregulated mntABC, while H2O2-induced upregulation diminished in the perR mutant. This suggests that perR represses mntABC expression but H2O2 can release the suppression. In conclusion, this work demonstrates that PerR regulates manganese homeostasis in S. oligofermentans, which is critical to H2O2 stress defenses and may be distributed across all oral streptococci lacking catalase.


Asunto(s)
Proteínas Bacterianas/metabolismo , Regulación Bacteriana de la Expresión Génica , Manganeso/metabolismo , Estrés Oxidativo , Proteínas Represoras/metabolismo , Streptococcus/genética , Streptococcus/metabolismo , Estrés Fisiológico , Proteínas Bacterianas/genética , Silenciador del Gen , Peróxido de Hidrógeno/toxicidad , Viabilidad Microbiana/efectos de los fármacos , Oxidantes/toxicidad , Proteínas Represoras/genética , Streptococcus/efectos de los fármacos
15.
J Clin Microbiol ; 52(2): 467-74, 2014 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-24478475

RESUMEN

Small-colony variants (SCVs) of bacteria are associated with recurrent and persistent infections. We describe for the first time SCVs of Streptococcus tigurinus in a patient with a prosthetic joint infection. S. tigurinus is a novel pathogen of the Streptococcus mitis group and causes invasive infections. We sought to characterize S. tigurinus SCVs using experimental methods and find possible genetic explanations for their phenotypes. The S. tigurinus SCVs were compared with the wild-type (WT) isolate using phenotypic methods, including growth under different conditions, autolysis, and visualization of the cell ultrastructure by use of transmission electron microscopy (TEM). Furthermore, comparative genome analyses were performed. The S. tigurinus SCVs displayed reduced growth compared to the WT and showed either a very stable or a fluctuating SCV phenotype. TEM analyses revealed major alterations in cell separation and morphological abnormalities, which were partially explained by impaired autolytic behavior. Intriguingly, the SCVs were more resistant to induced autolysis. Whole-genome sequencing revealed mutations in the genes involved in general cell metabolism, cell division, stringent response, and virulence. Clinically, the patient recovered after a 2-stage exchange of the prosthesis. Comparative whole-genome sequencing in clinical strains is a useful tool for identifying novel genetic signatures leading to the most persistent bacterial forms. The detection of viridans streptococcal SCVs is challenging in a clinical laboratory due to the small colony size. Thus, it is of major clinical importance for microbiologists and clinicians to be aware of viridans streptococcal SCVs, such as those of S. tigurinus, which lead to difficult-to-treat infections.


Asunto(s)
Artritis/microbiología , Genoma Bacteriano , Mutación , Infecciones Relacionadas con Prótesis/microbiología , Infecciones Estreptocócicas/microbiología , Streptococcus/crecimiento & desarrollo , Streptococcus/genética , Anciano de 80 o más Años , Análisis Mutacional de ADN , ADN Bacteriano/química , ADN Bacteriano/genética , Femenino , Humanos , Microscopía Electrónica de Transmisión , Datos de Secuencia Molecular , Análisis de Secuencia de ADN , Streptococcus/aislamiento & purificación , Streptococcus/ultraestructura
16.
J Appl Microbiol ; 116(2): 245-57, 2014 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-24279326

RESUMEN

AIM: Establishment of ruminal bacterial community in dairy calves. METHODS AND RESULTS: Rumen bacterial community was analysed on 6 calves bred according to commercial practices from day one to weaning at day 83 of age, using 454 16S rRNA-based pyrosequencing. Samples taken at day 1 did not produce amplicons. Analysis of data revealed a three-stage implantation process with a progressive but important shift of composition. At day 2, the bacterial community was mainly composed of Proteobacteria (70%) and Bacteroidetes (14%), and Pasteurellaceae was the dominant family (58%). The bacterial community abruptly changed between days 2 and 3, and until day 12, dominant genera were Bacteroides (21%), Prevotella (11%), Fusobacterium (5%) and Streptococcus (4%). From 15 to 83 days, when solid food intake rapidly increased, Prevotella became dominant (42%) and many genera strongly decreased or were no longer detected. A limited number of bacteria genera correlated with feed intake, rumen volatile fatty acids and enzymatic activities. CONCLUSION: The ruminal bacterial community is established before intake of solid food, but solid food arrival in turn shapes this community. SIGNIFICANCE AND IMPACT OF THE STUDY: This study provides insight into the establishment of calves' rumen bacterial community and suggests a strong effect of diet.


Asunto(s)
Bacterias/crecimiento & desarrollo , Dieta/veterinaria , Rumen/microbiología , Animales , Animales Recién Nacidos , Animales Lactantes , Bacterias/clasificación , Bacterias/genética , Bacteroides/clasificación , Bacteroides/genética , Bacteroides/crecimiento & desarrollo , Bacteroidetes/clasificación , Bacteroidetes/genética , Bacteroidetes/crecimiento & desarrollo , Bovinos , Calostro/microbiología , ADN Bacteriano/química , ADN Ribosómico/química , Dieta/clasificación , Ácidos Grasos Volátiles/análisis , Femenino , Fusobacterium/clasificación , Fusobacterium/genética , Fusobacterium/crecimiento & desarrollo , Masculino , Pasteurellaceae/clasificación , Pasteurellaceae/genética , Pasteurellaceae/crecimiento & desarrollo , Prevotella/clasificación , Prevotella/genética , Prevotella/crecimiento & desarrollo , Proteobacteria/clasificación , Proteobacteria/genética , Proteobacteria/crecimiento & desarrollo , ARN Bacteriano/genética , ARN Ribosómico 16S/genética , Rumen/enzimología , Rumen/metabolismo , Streptococcus/clasificación , Streptococcus/genética , Streptococcus/crecimiento & desarrollo , Destete
17.
Indian J Med Res ; 137(1): 164-8, 2013 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-23481067

RESUMEN

BACKGROUND & OBJECTIVES: Increasing resistance to erythromycin has been observed worldwide in group C and group G streptococci (GCS/GGS). The information available from India is scanty. The aim of the study was to identify erythromycin resistant GCS/GGS isolates in Chennai, south India, and to compare erythromycin resistant genotypes with emm types. METHODS: One hundred and thirty one GCS/GGS isolates were tested for erythromycin resistance by disc diffusion and agar dilution methods. Erythromycin resistance genotypes [erm(A), erm(B) and mef(A)] were determined by a multiplex PCR. emm types of erythromycin resistant GCS/GGS isolates was also assessed using emm gene sequencing method. RESULTS: Sixteen of the 131 isolates (12.21%) were resistant to erythromycin. Majority of the isolates were GGS (15/16). Eight of the 16 (50%) were S. dysgalactiae subsps. equisimilis. Twelve isolates (75%) were MLS B phenotype and four (25%) were M phenotype. Of the 12 isolates which exhibited MLS B resistance, seven showed cMLS B phenotype and were positive for erm(B) gene. The remaining five were iMLS B phenotype of which three were positive for erm(A) gene and two for erm(B) gene. erm(A) was common among carriers whereas erm(B) was common among clinical isolates. INTERPRETATION & CONCLUSIONS: MLS B was the predominant phenotype and erm(B) was the common genotype in the present study. The emm type stC1400.0 was frequently associated with erythromycin resistant GCS/GGS in our study.


Asunto(s)
Farmacorresistencia Bacteriana/genética , Eritromicina/uso terapéutico , Genotipo , Infecciones Estreptocócicas/tratamiento farmacológico , Streptococcus/genética , Antibacterianos/administración & dosificación , Humanos , India , Pruebas de Sensibilidad Microbiana , Infecciones Estreptocócicas/genética , Infecciones Estreptocócicas/patología , Streptococcus/patogenicidad , Streptococcus pneumoniae
18.
Appl Biochem Biotechnol ; 167(5): 1377-95, 2012 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-22415782

RESUMEN

The prolonged use of the antibiotics over the years has transformed many organisms resistant to multiple drugs. This has made the field of drug discovery of vital importance in curing various infections and diseases. The drugs act by binding to a specific target protein of prime importance for the cell's survival. Streptococcus agalactiae, Streptococcus pneumoniae, and Streptococcus pyogenes are the few gram positive organisms that have developed resistance to drugs. It causes pneumonia, meningitis, pharyngitis, otitis media, sinusitis, bacteremia, pericarditis, and arthritis infections. The present study was carried out to identify potential drug targets and inhibitors for beta subunit of DNA polymerase III in these three Streptococcus species that might facilitate the discovery of novel drugs in near future. Various steps were adopted to find out novel drug targets. And finally 3D structure of DNA polymerase III subunit beta was modeled. The ligand library was generated from various databases to find the most suitable ligands. All the ligands were docked using Molegro Virtual Docker and the lead molecules were investigated for ADME and toxicity.


Asunto(s)
Antibacterianos/metabolismo , ADN Polimerasa III/metabolismo , Descubrimiento de Drogas/métodos , Genómica/métodos , Terapia Molecular Dirigida , Streptococcus/efectos de los fármacos , Streptococcus/enzimología , Animales , Antibacterianos/farmacología , Antibacterianos/toxicidad , ADN Polimerasa III/química , ADN Polimerasa III/genética , Evaluación Preclínica de Medicamentos , Interacciones Huésped-Patógeno , Modelos Moleculares , Conformación Proteica , Transporte de Proteínas/efectos de los fármacos , Ratas , Streptococcus/genética , Streptococcus/fisiología , Fracciones Subcelulares/efectos de los fármacos , Fracciones Subcelulares/metabolismo
20.
J Basic Microbiol ; 49(5): 477-81, 2009 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-19322834

RESUMEN

Degrading hydrocarbon by Streptococcus sp. BT-003 as a kind of microbe for oil recovery was analyzed in this paper. The Streptococcus sp. BT-003 showed that it could use crude oil as the sole source of carbon and produce organic acid, bio-gas and polysaccharide which were propitious to emulsify and reduce the viscosity of crude oil. After cultivating 8-14 h, the viscosity of crude oil reduced from 8000-15000 mPa . s to 50-250 mPa . s. The content of organic acid increased 8-15 times, and carbon dioxide and polysaccharide reached 55 ml/l and 8 g/l respectively. Paraffin and resin reduced by 60-95%, and light components increased obviously. Fluid rheology was better than before, the interfacial tension between the crude oil and water were reduced effectively.


Asunto(s)
Petróleo/metabolismo , Streptococcus/metabolismo , Animales , Biocombustibles/análisis , Ácidos Carboxílicos/análisis , Bovinos , Mutagénesis , Mucosa Nasal/microbiología , Parafina/análisis , Polisacáridos Bacterianos/química , Polisacáridos Bacterianos/metabolismo , Streptococcus/genética , Viscosidad
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