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1.
J Enzyme Inhib Med Chem ; 36(1): 749-757, 2021 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-33715562

RESUMEN

Bioassay-guided fractionation of the ethyl acetate extract from Teucrium flavum subsp. glaucum, endowed with inhibitory activity towards the HIV-1 reverse transcriptase-associated RNase H function, led to the isolation of salvigenin (1), cirsimaritin (2) and cirsiliol (3) along with the neo-clerodanes teuflavin (4) and teuflavoside (5). Acid hydrolysis of the inactive teuflavoside provided three undescribed neo-clerodanes, flavuglaucins A-C (7-9) and one known neo-clerodane (10). Among all neo-clerodanes, flavuglaucin B showed the highest inhibitory activity towards RNase H function with a IC50 value of 9.1 µM. Molecular modelling and site-directed mutagenesis analysis suggested that flavuglaucin B binds into an allosteric pocket close to RNase H catalytic site. This is the first report of clerodane diterpenoids endowed with anti-reverse transcriptase activity. Neo-clerodanes represent a valid scaffold for the development of a new class of HIV-1 RNase H inhibitors.


Asunto(s)
Diterpenos de Tipo Clerodano/farmacología , Flavonoides/farmacología , Transcriptasa Inversa del VIH/antagonistas & inhibidores , Extractos Vegetales/farmacología , Inhibidores de la Transcriptasa Inversa/farmacología , Ribonucleasa H/antagonistas & inhibidores , Teucrium/química , Diterpenos de Tipo Clerodano/química , Diterpenos de Tipo Clerodano/aislamiento & purificación , Relación Dosis-Respuesta a Droga , Flavonoides/química , Flavonoides/aislamiento & purificación , Transcriptasa Inversa del VIH/genética , Transcriptasa Inversa del VIH/metabolismo , Concentración de Iones de Hidrógeno , Hidrólisis , Modelos Moleculares , Conformación Molecular , Mutagénesis Sitio-Dirigida , Extractos Vegetales/química , Extractos Vegetales/aislamiento & purificación , Inhibidores de la Transcriptasa Inversa/química , Inhibidores de la Transcriptasa Inversa/aislamiento & purificación , Ribonucleasa H/genética , Ribonucleasa H/metabolismo , Relación Estructura-Actividad
2.
Chem Biol Drug Des ; 97(1): 157-166, 2021 01.
Artículo en Inglés | MEDLINE | ID: mdl-32757477

RESUMEN

The HIV-1 reverse transcriptase (HIV-1 RT), which is responsible for transcription of viral RNA genomes into DNA genomes, has become an important target for the treatment of patients with HIV infection. Hydrolyzed peptides from plants are considered a new source of potential drugs. In order to develop new effective inhibitors, peptides extracted from 111 Asian medicinal plants were screened against the HIV-1 RT. The crude hydrolyzed peptides from the fruit peel of Quercus infectoria were selected for purification and peptide sequence determination by HPLC and LC-MS. Two peptides of interest were synthesized, and an IC50 test was performed to determine their ability to inhibit the HIV-1 RT. The IC50 values of the peptides AIHIILI and LIAVSTNIIFIVV were determined to be 274 ± 5.10 nm and 236.4 ± 7.07 nm, respectively. This indicated that these peptides could be further developed as potential HIV-1 RT inhibitors.


Asunto(s)
Transcriptasa Inversa del VIH/antagonistas & inhibidores , VIH-1/enzimología , Péptidos/química , Proteínas de Plantas/metabolismo , Quercus/química , Inhibidores de la Transcriptasa Inversa/química , Secuencia de Aminoácidos , Cromatografía Líquida de Alta Presión , Frutas/química , Frutas/metabolismo , Transcriptasa Inversa del VIH/metabolismo , Hidrólisis , Péptidos/aislamiento & purificación , Péptidos/metabolismo , Extractos Vegetales/metabolismo , Proteínas de Plantas/química , Plantas Medicinales/química , Plantas Medicinales/metabolismo , Quercus/metabolismo , Inhibidores de la Transcriptasa Inversa/metabolismo , Espectrometría de Masas en Tándem
3.
RNA ; 26(11): 1667-1679, 2020 11.
Artículo en Inglés | MEDLINE | ID: mdl-32732393

RESUMEN

Nucleic acid aptamers can be chemically modified to enhance function, but modifying previously selected aptamers can have nontrivial structural and functional consequences. We present a reselection strategy to evaluate the impact of several modifications on preexisting aptamer pools. RNA aptamer libraries with affinity to HIV-1 reverse transcriptase (RT) were retranscribed with 2'-F, 2'-OMe, or 2'-NH2 pyrimidines and subjected to three additional selection cycles. RT inhibition was observed for representative aptamers from several structural families identified by high-throughput sequencing when transcribed with their corresponding modifications. Thus, reselection identified specialized subsets of aptamers that tolerated chemical modifications from unmodified preenriched libraries. Inhibition was the strongest with the 2'-F-pyrimidine (2'-FY) RNAs, as compared to inhibition by the 2'-OMeY and 2'-NH2Y RNAs. Unexpectedly, a diverse panel of retroviral RTs were strongly inhibited by all 2'-FY-modified transcripts, including sequences that do not inhibit those RTs as unmodified RNA. The magnitude of promiscuous RT inhibition was proportional to mole fraction 2'-FY in the transcript. RT binding affinity by 2'-FY transcripts was more sensitive to salt concentration than binding by unmodified transcripts, indicating that interaction with retroviral RTs is more ionic in character for 2'-FY RNA than for unmodified 2'-OH RNA. These surprising features of 2'-FY-modified RNA may have general implications for applied aptamer technologies.


Asunto(s)
Aptámeros de Nucleótidos/síntesis química , Transcriptasa Inversa del VIH/antagonistas & inhibidores , VIH-1/enzimología , Piridinas/química , Inhibidores de la Transcriptasa Inversa/síntesis química , Aptámeros de Nucleótidos/química , Aptámeros de Nucleótidos/farmacología , Evaluación Preclínica de Medicamentos , Biblioteca de Genes , VIH-1/efectos de los fármacos , Secuenciación de Nucleótidos de Alto Rendimiento , Humanos , Conformación de Ácido Nucleico , Inhibidores de la Transcriptasa Inversa/química , Inhibidores de la Transcriptasa Inversa/farmacología , Técnica SELEX de Producción de Aptámeros
4.
J Ethnopharmacol ; 258: 112931, 2020 Aug 10.
Artículo en Inglés | MEDLINE | ID: mdl-32360797

RESUMEN

ETHNOPHARMACOLOGICAL RELEVANCE: Medicinal plants are used in the management of Human Immunodeficiency Virus and Acquired Immunodeficiency Syndrome (HIV/AIDS) in many developing country settings where HIV-1 subtype C drives the epidemic. Efforts to identify plant derived molecules with anti-HIV properties require reproducible assay systems for routine screening of selected plant compounds. Although a number of standardized HIV-1 pseudoviruses have been generated to assess infectivity, replicability or reproducibility, HIV-1 subtype C (HIV-1-C) pseudoviruses have not been comprehensively characterized to identify inhibitory plant substances. AIM OF THE STUDY: The current study aimed at developing an HIV-1-C pseudovirus assay, and evaluate plant substances targeting reverse transcriptase (RT) activity. MATERIALS AND METHODS: HIV-1 subtype C pseudoviruses containing a luciferase reporter gene were generated by transfection of human 293T cells. HIV-1 subtype B (HIV-1-B) wild type pseudoviruses and mutants resistant to nucleoside and non-nucleoside RT inhibitors were also generated and used as controls. Selected plant substances and the RT inhibitors Zidovudine (AZT) and Nevirapine (NVP), were used to evaluate inhibition. Pseudovirus infectivity was determined by luciferase measurement in CF2/CD4+/CCR5 cells, and cytotoxicity was determined using the MTT assay. AZT and NVP inhibited wild type pseudoviruses in a dose dependent manner, with IC50 values in the nanomolar range. RESULTS: Pseudoviruses harbouring RT drug resistance mutations were poorly suppressed by AZT and NVP. Catechin, obtained from Peltophorum africanum inhibited HIV-1-C and HIV-1-B pseudoviruses with selective indices of 6304 µM (IC50: 0.49 µM, CC50: 3089 µM) and 1343 µM (IC50: 2.3 µM, CC50: 3089 µM), respectively; while the methanol root crude extract of Elaeodendron transvaalense gave IC50 values of 11.11 µg/ml and 16.86 µg/ml, respectively. CONCLUSION: The developed HIV-1-C pseudovirus assay can be used to screen plant substances for RT inhibition, and may have utility in settings with limited access to high level biosafety facilities.


Asunto(s)
Fármacos Anti-VIH/farmacología , Transcriptasa Inversa del VIH/antagonistas & inhibidores , VIH-1/efectos de los fármacos , Preparaciones de Plantas/farmacología , Inhibidores de la Transcriptasa Inversa/farmacología , Fármacos Anti-VIH/administración & dosificación , Relación Dosis-Respuesta a Droga , Células HEK293 , Infecciones por VIH/tratamiento farmacológico , Infecciones por VIH/virología , VIH-1/enzimología , Humanos , Concentración 50 Inhibidora , Nevirapina/administración & dosificación , Nevirapina/farmacología , Preparaciones de Plantas/administración & dosificación , Plantas Medicinales/química , Reproducibilidad de los Resultados , Inhibidores de la Transcriptasa Inversa/administración & dosificación , Zidovudina/administración & dosificación , Zidovudina/farmacología
5.
Eur J Med Chem ; 189: 112071, 2020 Mar 01.
Artículo en Inglés | MEDLINE | ID: mdl-32004936

RESUMEN

From an aqueous decoction of the traditional Chinese medicine "ban lan gen" (the Isatis indigotica root), an antiviral natural product CI - 39 was isolated as an NNRTI (non-nucleoside reverse transcriptase inhibitor) (EC50 = 3.40 µM). Its novel structure was determined as methyl (1-methoxy-1H-indol-3-yl)acetamidobenzoate by spectroscopic data and confirmed by single crystal X-ray diffraction. Through synthesis and structure-activity relationship (SAR) investigation of CI - 39 and 57 new derivatives (24 with EC50 values of 0.06-8.55 µM), two optimized derivatives 10f and 10i (EC50: 0.06 µM and 0.06 µM) having activity comparable to that of NVP (EC50 = 0.03 µM) were obtained. Further evaluation verified that 10f and 10i were RT DNA polymerase inhibitors and exhibited better activities and drug resistance folds compared to NVP against seven NNRTI-resistant strains carrying different mutations. Especially, 10i (EC50 = 0.43 µM) was more active to the L100I/K103N double-mutant strain as compared to both NVP (EC50 = 0.76 µM) and EFV (EC50 = 1.08 µM). The molecular docking demonstrated a possible binding pattern between 10i and RT and revealed activity mechanism of 10i against the NNRTI-resistant strains.


Asunto(s)
Descubrimiento de Drogas , Infecciones por VIH/tratamiento farmacológico , Transcriptasa Inversa del VIH/antagonistas & inhibidores , VIH-1/efectos de los fármacos , Indoles/síntesis química , Indoles/farmacología , Isatis/química , Inhibidores de la Transcriptasa Inversa/síntesis química , Inhibidores de la Transcriptasa Inversa/farmacología , Fármacos Anti-VIH/síntesis química , Fármacos Anti-VIH/farmacología , Diseño de Fármacos , Farmacorresistencia Viral , Células HEK293 , Infecciones por VIH/virología , VIH-1/enzimología , Humanos , Ácidos Indolacéticos/química , Estructura Molecular , Mutación , Extractos Vegetales/farmacología , Relación Estructura-Actividad
6.
Int J Med Mushrooms ; 22(10): 991-1000, 2020.
Artículo en Inglés | MEDLINE | ID: mdl-33426828

RESUMEN

A ribonuclease was purified from dry fruiting bodies of the wild edible mushroom Lepista personata (LPR) to 259-fold with a specific activity of 280 U/mg. The purification protocol involved ion-exchange chromatography on DEAE-cellulose, CM-cellulose and SP-sepharose, followed by size exclusion chromatography on Superdex 75. LPR is a homodimeric protein with a molecular weight of 27.8 kDa as determined by SDS-PAGE and by gel filtration. Three inner peptide sequences for LPR were obtained by LC-MS-MS analysis. It demonstrated the optimum pH of 4.0 and temperature optimum of 60°C. The specificity ribonuclease potencies order toward polyhomoribonucleotides was poly C > poly A > poly G > poly U. The ribonuclease inhibited HIV-1 reverse transcriptase with an IC50 of 0.53 µM.


Asunto(s)
Agaricales/enzimología , Proteínas Fúngicas/aislamiento & purificación , Transcriptasa Inversa del VIH/antagonistas & inhibidores , Ribonucleasas/aislamiento & purificación , Agaricales/química , Agaricales/metabolismo , Estabilidad de Enzimas , Cuerpos Fructíferos de los Hongos/química , Cuerpos Fructíferos de los Hongos/enzimología , Proteínas Fúngicas/química , Transcriptasa Inversa del VIH/química , Concentración de Iones de Hidrógeno , Peso Molecular , Ribonucleasas/química
7.
J Biomol Struct Dyn ; 38(11): 3327-3341, 2020 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-31422767

RESUMEN

Non-nucleosides reverse transcriptase inhibitors (NNRTIs), specifically targeting the HIV-1 reverse transcriptase (RT), play a unique role in anti-AIDS agents due to their high antiviral potency, structural diversity, and low toxicity in antiretroviral combination therapies used to treat HIV. However, due to the emergence of new drug-resistant strains, the development of novel NNRTIs with adequate potency, improved resistance profiles and less toxicity is highly required. In this work, a novel virtual screening strategy combined with structure-based drug design was proposed to discover the potential inhibitors against drug-resistant HIV strains. Seven structure-variant RTs, ranging from the wild type to a hypothetical multi-mutant were regarded as target proteins to perform structure-based virtual screening. Totally 23 small molecules with good binding affinity were identified from the Traditional Chinese Medicine database (TCM) as potential NNRTIs candidates. Among these hits, (+)-Hinokinin has confirmed anti-HIV activity, and some hits are structurally identical with anti-HIV compounds. Almost all these hits are consistent with external experimental results. Molecular simulations analysis revealed that top 2 hits (Pallidisetin A and Pallidisetin B) bind stably and in high affinity to HIV-RT, which are ready to be experimental confirmed. These results suggested that the strategy we proposed is feasible, trustworthy and effective. Our finding might be helpful in the identification of novel NNRTIs against drug-resistant, and also provide a new clue for the discovery of HIV drugs in natural products.Communicated by Ramaswamy H. Sarma.


Asunto(s)
Fármacos Anti-VIH , Transcriptasa Inversa del VIH/antagonistas & inhibidores , VIH-1/efectos de los fármacos , Fármacos Anti-VIH/farmacología , Simulación por Computador , Farmacorresistencia Viral , Inhibidores de la Transcriptasa Inversa/farmacología
8.
J Agric Food Chem ; 67(43): 11942-11947, 2019 Oct 30.
Artículo en Inglés | MEDLINE | ID: mdl-31622090

RESUMEN

Manilkara zapota, usually known as Sapodilla, is a fairly slow-growing evergreen tropical tree which belongs to the genus Manilkara (Sapotaceae), indigenous to Central America, southern Mexico, and the Caribbean. The ripe fruits of M. zapota have been widely consumed as an uniquely flavored tropical fruit and verified to hold a variety of health benefits. In order to investigate the potential health-promoting chemical compositions from the fruits of M. zapota cultivated in Hainan Island of China, a systematic and in-depth phytochemical study on this fruit was accordingly implemented. In our current study, three new prenylated coumarins, manizapotins A-C (1-3), together with seven known prenylated coumarins (4-10), were separated from the fruits of M. zapota. The chemical structures of new prenylated coumarins 1-3 were unambiguously established by means of comprehensive spectroscopic analyses, and the known compounds 4-10 were determined by comparing their experimental spectral data with those described data in the literature. This is the first time to discover prenylated coumarins occurring in M. zapota. The potential anti-inflammatory effects and anti-HIV (human immunodeficiency virus) activities of all these separated prenylated coumarins were assessed. Prenylated coumarins 1-10 dispalyed remarkable inhibitory effects against nitric oxide production induced by lipopolysaccharide in mouse macrophage RAW 264.7 cells with the IC50 values equivalent to that of hydrocortisone in vitro. Meanwhile, prenylated coumarins 1-10 exhibited pronounced anti-HIV-1 reverse transcriptase activities with the EC50 values in range of 0.12-8.69 µM. These results suggest that appropriate and reasonable consumption of the fruits of M. zapota might assist people to prevent and reduce the occurrence of inflammatory diseases together with the infection of HIV. Furthermore, the discovery of these prenylated coumarins from the fruits of M. zapota holding pronounced anti-inflammatory effects along with anti-HIV activities could be of great significance to the research and development of new natural anti-inflammatory and anti-HIV agents.


Asunto(s)
Fármacos Anti-VIH/química , Antiinflamatorios/química , Cumarinas/química , Manilkara/química , Extractos Vegetales/química , Animales , Fármacos Anti-VIH/aislamiento & purificación , Fármacos Anti-VIH/farmacología , Antiinflamatorios/aislamiento & purificación , Antiinflamatorios/farmacología , China , Cumarinas/aislamiento & purificación , Cumarinas/farmacología , Frutas/química , Transcriptasa Inversa del VIH/antagonistas & inhibidores , Transcriptasa Inversa del VIH/metabolismo , VIH-1/efectos de los fármacos , VIH-1/enzimología , Macrófagos/efectos de los fármacos , Macrófagos/inmunología , Ratones , Estructura Molecular , Extractos Vegetales/aislamiento & purificación , Extractos Vegetales/farmacología , Prenilación , Células RAW 264.7
9.
Nat Prod Res ; 33(12): 1798-1803, 2019 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-29397771

RESUMEN

During our search for potential templates of HIV-1 reverse transcriptase (RT) and integrase (IN) dual inhibitors, the methanolic extract obtained from aerial parts of Limonium morisianum was investigated. Repeated bioassay-guided chromatographic purifications led to the isolation of the following secondary metabolites: myricetin, myricetin 3-O-rutinoside, myricetin-3-O-(6″-O-galloyl)-ß-d-galactopyranoside, (-)-epigallocatechin 3-O-gallate, tryptamine, ferulic and phloretic acids. The isolated compounds were tested on both HIV-1 RT-associated RNase H and IN activities. Interestingly, (-)-epigallocatechin-3-O-gallate and myricetin-3-O-(6″-O-galloyl)-ß-d-galactopyranoside potently inhibited both enzyme activities with IC50 values ranging from 0.21 to 10.9 µM. Differently, tryptamine and ferulic acid exhibited a significant inhibition only on the IN strand transfer reaction, showing a selectivity for this viral enzyme. Taken together these results strongly support the potential of this plant as a valuable anti HIV-1 drugs source worthy of further investigations.


Asunto(s)
Fármacos Anti-VIH/farmacología , Inhibidores de Integrasa VIH/farmacología , Transcriptasa Inversa del VIH/antagonistas & inhibidores , Plumbaginaceae/química , Fármacos Anti-VIH/química , Flavonoides/química , Flavonoides/farmacología , Galactosa/análogos & derivados , Galactosa/química , Galactosa/farmacología , Inhibidores de Integrasa VIH/química , Italia , Componentes Aéreos de las Plantas/química , Extractos Vegetales/química , Extractos Vegetales/farmacología , Inhibidores de la Transcriptasa Inversa/química , Inhibidores de la Transcriptasa Inversa/farmacología , Ribonucleasa H/antagonistas & inhibidores
10.
Eur J Med Chem ; 161: 1-10, 2019 Jan 01.
Artículo en Inglés | MEDLINE | ID: mdl-30342421

RESUMEN

In this work we report a parallel application of both docking- and shape-based virtual screening (VS) methods, followed by Molecular Dynamics simulations (MDs), for discovering new compounds able to inhibit the human immunodeficiency virus type 1 (HIV-1) reverse transcriptase (RT) RNA-dependent DNA polymerase activity. Specifically, we screened more than 143000 natural compounds commercially available in the ZINC database against the best five RT crystallographic models, taking into account the five approved NNRTIs as query compounds. As a result, 20 hit molecules were selected and tested on biochemical assays for the inhibition of the RNA dependent DNA polymerase RT function and, among them, an indoline pyrrolidine (hit1), an indonyl piperazine (hit2) and an indolyl indolinone (hit3) derivatives were identified as novel non-nucleoside RT inhibitors in the low micromolar range.


Asunto(s)
Productos Biológicos/farmacología , Transcriptasa Inversa del VIH/antagonistas & inhibidores , VIH-1/efectos de los fármacos , Inhibidores de la Transcriptasa Inversa/farmacología , Productos Biológicos/química , Evaluación Preclínica de Medicamentos , Transcriptasa Inversa del VIH/metabolismo , VIH-1/enzimología , Humanos , Pruebas de Sensibilidad Microbiana , Conformación Molecular , Simulación de Dinámica Molecular , Inhibidores de la Transcriptasa Inversa/química
11.
Eur J Med Chem ; 157: 310-319, 2018 Sep 05.
Artículo en Inglés | MEDLINE | ID: mdl-30099253

RESUMEN

1,3-oxazine nucleus and thiazolyl group features prominently in many biologically important natural products as well as bioactive molecules. A series of novel 2-thiazolyl substituted-2,3-dihydro-1H-naphtho [1,2-e][1,3]oxazine derivatives were designed and synthesized based on their structure-activity relationships (SARs) from 2-naphthol, substituted thiazolyl amines and formalin through ring closure by one-pot three component reaction. These derivatives were first evaluated for their inhibitory effect on HIV-1 Reverse Transcriptase (RT) enzyme activity. Out of 14 compounds, 4 showed potent inhibition of HIV-1 RT activity at significantly low concentration. Docking studies of these molecules revealed their high affinity binding to several amino acids of HIV-1 RT which are less sensitive to point mutations. Furthermore, anti-HIV activity of these molecules was analysed in a CD4+ T cell-line, which indicates that Therapeutic Index (TI) of some of these compounds is better than Zidovudine and Efavirenz, known HIV-1 RT inhibitors. Taken together, our studies report for the first time some novel naphthoxazine derivatives with significant TI, which is through inhibition of HIV-1 RT activity.


Asunto(s)
Fármacos Anti-VIH/farmacología , Diseño de Fármacos , Transcriptasa Inversa del VIH/antagonistas & inhibidores , VIH-1/efectos de los fármacos , Naftalenos/farmacología , Oxazinas/farmacología , Inhibidores de la Transcriptasa Inversa/farmacología , Tiazoles/farmacología , Fármacos Anti-VIH/síntesis química , Fármacos Anti-VIH/química , Relación Dosis-Respuesta a Droga , Evaluación Preclínica de Medicamentos , Transcriptasa Inversa del VIH/metabolismo , Pruebas de Sensibilidad Microbiana , Simulación del Acoplamiento Molecular , Estructura Molecular , Naftalenos/síntesis química , Naftalenos/química , Oxazinas/síntesis química , Oxazinas/química , Inhibidores de la Transcriptasa Inversa/síntesis química , Inhibidores de la Transcriptasa Inversa/química , Relación Estructura-Actividad , Tiazoles/síntesis química , Tiazoles/química
12.
Nat Prod Res ; 32(6): 640-647, 2018 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-28540745

RESUMEN

Reverse transcriptase (RT)-associated DNA polymerase (RDDP) and ribonucleaser H (RNase H) functions are both essential for HIV-1 genome replication, and the identification of new inhibitors to block both of them is a goal actively pursued by the scientific community. In this field, natural extracts have shown a great potential as source of new antivirals. In the present work, we investigated the effect of Uvaria angolensis extracts on the HIV-1 reverse transcriptase-associated DNA polymerase and ribonuclease H activities. The U. angolensis stem bark methanol extract inhibit both HIV-1 RNase H function and RDDP activity with IC50 values of 1.0 ± 0.2 and 0.62 ± 0.15 µg/mL, respectively and, after been fractionated with different solvents, its solid residue showed an IC50 of 0.10 ± 0.03 and of 0.23 ± 0.04 µg/mL against RNase H and RDDP, respectively, hence laying the bases for further studies for identification of single active components.


Asunto(s)
Fármacos Anti-VIH/farmacología , Transcriptasa Inversa del VIH/antagonistas & inhibidores , Inhibidores de la Transcriptasa Inversa/farmacología , Ribonucleasa H/antagonistas & inhibidores , Uvaria/química , Fármacos Anti-VIH/química , Línea Celular , Fraccionamiento Químico , Evaluación Preclínica de Medicamentos/métodos , Humanos , Concentración 50 Inhibidora , Corteza de la Planta/química , Extractos Vegetales/química , Extractos Vegetales/farmacología , ADN Polimerasa Dirigida por ARN/metabolismo , Inhibidores de la Transcriptasa Inversa/química
13.
AIDS Res Ther ; 14(1): 57, 2017 Oct 12.
Artículo en Inglés | MEDLINE | ID: mdl-29025433

RESUMEN

BACKGROUND: Plant extracts are sources of valuable compounds with biological activity, especially for the anti-proliferative activity against pathogens or tumor cells. Myricetin is a flavonoid found in several plants that has been described as an inhibitor of Human immunodeficiency virus type 1 (HIV-1) through its action against the HIV reverse transcriptase, but myricetin derivatives have not been fully studied. The aim of this study was to evaluate the anti-HIV-1 activity of glycosylated metabolites obtained from Marcetia taxifolia and derived from myricetin: myricetin rhamnoside and myricetin 3-(6-rhamnosylgalactoside). METHODS: Compounds were obtained from organic extracts by maceration of aerial parts of M. taxifolia. All biological assays were performed in the MT4 cell line. Antiviral activity was measured as inhibition of p24 and reverse transcriptase with a fluorescent assay. RESULTS: Both flavonoids have antiviral activity in vitro, with an EC50 of 120 µM for myricetin 3-rhamnoside (MR) and 45 µM for myricetin 3-(6-rhamnosylgalactoside) (MRG), both significantly lower than the EC50 of myricetin (230 µM). Although both compounds inhibited the reverse transcriptase activity, with an IC50 of 10.6 µM for MR and 13.8 µM for MRG, myricetin was the most potent, with an IC50 of 7.6 µM, and an inhibition greater than 80%. Molecular docking approach showed correlation between the free energy of binding with the assays of enzyme inhibition. CONCLUSIONS: The results suggest that glycosylated moiety might enhance the anti-HIV-1 activity of myricetin, probably by favoring the internalization of the flavonoid into the cell. The inhibition of the HIV-1 reverse transcriptase is likely responsible for the antiviral activity.


Asunto(s)
Fármacos Anti-VIH/farmacología , Flavonoides/farmacología , Galactósidos/farmacología , Proteína p24 del Núcleo del VIH/antagonistas & inhibidores , Transcriptasa Inversa del VIH/antagonistas & inhibidores , Manósidos/farmacología , Inhibidores de la Transcriptasa Inversa/farmacología , Línea Celular , Glicosilación , Infecciones por VIH/tratamiento farmacológico , VIH-1/efectos de los fármacos , Humanos , Simulación del Acoplamiento Molecular , Replicación Viral/efectos de los fármacos
14.
Pathog Dis ; 75(6)2017 08 31.
Artículo en Inglés | MEDLINE | ID: mdl-28637198

RESUMEN

Despite the availability of several anti-retrovirals, there is still an urgent need for developing novel therapeutic strategies and finding new drugs against underexplored HIV-1 targets. Among them, there are the HIV-1 reverse transcriptase (RT)-associated ribonuclease H (RNase H) function and the cellular α-glucosidase, involved in the control mechanisms of N-linked glycoproteins formation in the endoplasmic reticulum. It is known that many natural compounds, such as pentacyclic triterpenes, are a promising class of HIV-1 inhibitors. Hence, here we tested the pentacyclic triterpene Lupeol, showing that it inhibits the HIV-1 RT-associated RNase H function. We then performed combination studies of Lupeol and the active site RNase H inhibitor RDS1759, and blind docking calculations, demonstrating that Lupeol binds to an HIV-1 RT allosteric pocket. On the bases of these results and searching for potential multitarget active drug supplement, we also investigated the anti-HIV-1 activity of Hemidesmus indicus, an Ayurveda medicinal plant containing Lupeol. Results supported the potential of this plant as a valuable multitarget active drug source. In fact, by virtue of its numerous active metabolites, H. indicus was able to inhibit not only the RT-associated RNase H function, but also the HIV-1 RT-associated RNA-dependent DNA polymerase activity and the cellular α-glucosidase.


Asunto(s)
Fármacos Anti-VIH/farmacología , Inhibidores Enzimáticos/farmacología , Transcriptasa Inversa del VIH/antagonistas & inhibidores , Hemidesmus/química , Triterpenos Pentacíclicos/farmacología , Ribonucleasa H/antagonistas & inhibidores , Sitio Alostérico , Fármacos Anti-VIH/química , Fármacos Anti-VIH/aislamiento & purificación , Inhibidores Enzimáticos/química , Inhibidores Enzimáticos/aislamiento & purificación , Regulación de la Expresión Génica , Transcriptasa Inversa del VIH/química , Transcriptasa Inversa del VIH/genética , Transcriptasa Inversa del VIH/metabolismo , VIH-1/efectos de los fármacos , VIH-1/enzimología , VIH-1/crecimiento & desarrollo , Interacciones Huésped-Patógeno , Humanos , Células Jurkat , Simulación del Acoplamiento Molecular , Triterpenos Pentacíclicos/química , Extractos Vegetales/química , Extractos Vegetales/farmacología , Dominios y Motivos de Interacción de Proteínas , Estructura Secundaria de Proteína , Ribonucleasa H/química , Ribonucleasa H/genética , Ribonucleasa H/metabolismo , alfa-Glucosidasas/genética , alfa-Glucosidasas/metabolismo
15.
Int J Biol Macromol ; 102: 1146-1155, 2017 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-28472687

RESUMEN

Dioscorea bulbifera or air potato has been used as a folk remedy to treat cancer. A mannose binding lectin from bulbils of D. bulbifera was purified in a single step by affinity chromatography on mucin coupled Sepharose 4B column, determined by its fine sugar specificity by glycan array analysis and studied for its clinical potential in cancer and HIV research. SDS-PAGE showed that lectin is a monomer of Mr 24kDa. DBL agglutinated only rabbit erythrocytes and was inhibited by mucin, asialomucin, fetuin, asialofetuin and transferrin but not by any monosaccharides. Glycan array analysis of DBL revealed its affinity toward high mannose N-linked glycans with enhanced affinity for terminal mannose including N-linked glycans of HIV envelope glycoprotein gp120 and has strong anti-reverse transcriptase activity. DBL showed strong binding to non-metastatic human colon epithelial cancer HT 29, metastatic SW 620 and hepatocellular HepG2 cell lines. DBL showed dose and time dependent growth inhibitory effects on all the three cell lines HT 29, SW 620 and HepG2 with IC50 of 110µg, 9.8µg, 40µg respectively at 72h. Inhibitory effect of DBL was effectively blocked in presence of competing glycans like mucin. DBL has promising clinical potential both in cancer and HIV research.


Asunto(s)
Dioscorea , Lectina de Unión a Manosa/aislamiento & purificación , Lectina de Unión a Manosa/farmacología , Animales , Proliferación Celular/efectos de los fármacos , Transcriptasa Inversa del VIH/antagonistas & inhibidores , Células HT29 , Haptenos/metabolismo , Hemaglutinación/efectos de los fármacos , Humanos , Lectina de Unión a Manosa/química , Lectina de Unión a Manosa/metabolismo , Peso Molecular , Conejos , Especificidad por Sustrato
16.
Eur J Med Chem ; 130: 248-260, 2017 Apr 21.
Artículo en Inglés | MEDLINE | ID: mdl-28254698

RESUMEN

Using an HIV-1 Reverse Transcriptase (RT)-associated RNase H inhibition assay as lead, bioguided fractionation of the dichloromethane extract of the Ocimum sanctum leaves led to the isolation of five triterpenes (1-5) along with three 3-methoxy-4-hydroxy phenyl derivatives (6-8). The structure of this isolates were determined by 1D and 2D NMR experiments as well as ESI-MS. Tetradecyl ferulate (8) showed an interesting RNase H IC50 value of 12.4 µM and due to the synthetic accessibility of this secondary metabolite, a structure-activity relationship study was carried out. A series of esters and amides of ferulic and caffeic acids were synthesized and, among all, the most active was N-oleylcaffeamide displaying a strong inhibitory activity towards both RT-associated functions, ribonuclease H and DNA polymerase. Molecular modeling studies together with Yonetani-Theorell analysis, demonstrated that N-oleylcaffeamide is able to bind both two allosteric site located one close to the NNRTI binding pocket and the other close to RNase H catalytic site.


Asunto(s)
Fármacos Anti-VIH/química , Ácidos Cafeicos/farmacología , Ácidos Cumáricos/farmacología , Transcriptasa Inversa del VIH/antagonistas & inhibidores , Amidas/farmacología , Fármacos Anti-VIH/farmacología , Sitios de Unión , Ácidos Cumáricos/química , ADN Polimerasa Dirigida por ADN/efectos de los fármacos , Ésteres/farmacología , Extractos Vegetales/química , Ribonucleasa H del Virus de la Inmunodeficiencia Humana/antagonistas & inhibidores , Relación Estructura-Actividad , Triterpenos
17.
Bioorg Med Chem Lett ; 26(16): 4101-5, 2016 08 15.
Artículo en Inglés | MEDLINE | ID: mdl-27390064

RESUMEN

A library of 585 compounds built off a 7-azaindole core was evaluated for anti-HIV-1 activity, and ten hits emerged with submicromolar potency and therapeutic index >100. Of these, three were identified as non-nucleoside reverse transcriptase (RT) inhibitors and were assayed against relevant resistant mutants. Lead compound 8 inhibited RT with submicromolar potency (IC50=0.73µM) and also maintained some activity against the clinically important RT mutants K103N and Y181C (IC50=9.2, 3.5µM) in cell-free assays. Free energy perturbation guided lead optimization resulted in the development of a compound with a two-fold increase in potency against RT (IC50=0.36µM). These data highlight the discovery of a unique scaffold with the potential to move forward as next-generation anti-HIV-1 agents.


Asunto(s)
Transcriptasa Inversa del VIH/antagonistas & inhibidores , VIH-1/enzimología , Indoles/química , Inhibidores de la Transcriptasa Inversa/química , Animales , Sitios de Unión , Supervivencia Celular/efectos de los fármacos , Chlorocebus aethiops , Evaluación Preclínica de Medicamentos , Transcriptasa Inversa del VIH/genética , Transcriptasa Inversa del VIH/metabolismo , VIH-1/efectos de los fármacos , Humanos , Indoles/metabolismo , Indoles/farmacología , Indoles/toxicidad , Simulación del Acoplamiento Molecular , Mutagénesis Sitio-Dirigida , Unión Proteica , Estructura Terciaria de Proteína , Inhibidores de la Transcriptasa Inversa/metabolismo , Inhibidores de la Transcriptasa Inversa/farmacología , Células Vero
18.
Drug Des Devel Ther ; 10: 1365-77, 2016.
Artículo en Inglés | MEDLINE | ID: mdl-27114700

RESUMEN

A novel virtual screening approach is implemented herein, which is a further improvement of our previously published "target-bound pharmacophore modeling approach". The generated pharmacophore library is based only on highly contributing amino acid residues, instead of arbitrary pharmacophores, which are most commonly used in the conventional approaches in literature. Highly contributing amino acid residues were distinguished based on free binding energy contributions obtained from calculation from molecular dynamic (MD) simulations. To the best of our knowledge; this is the first attempt in the literature using such an approach; previous approaches have relied on the docking score to generate energy-based pharmacophore models. However, docking scores are reportedly unreliable. Thus, we present a model for a per-residue energy decomposition, constructed from MD simulation ensembles generating a more trustworthy pharmacophore model, which can be applied in drug discovery workflow. This work is aimed at introducing a more rational approach to the field of drug design, rather than comparing the validity of this approach against those previously reported. We recommend additional computational and experimental work to further validate this approach. This approach was used to screen for potential reverse transcriptase inhibitors using the pharmacophoric features of compound GSK952. The complex was subjected to docking, thereafter, MD simulation confirmed the stability of the system. Experimentally determined inhibitors with known HIV-reverse transcriptase inhibitory activity were used to validate the protocol. Two potential hits (ZINC46849657 and ZINC54359621) showed a significant potential with regard to free binding energy. Reported results obtained from this work confirm that this new approach is favorable in the future of the drug design industry.


Asunto(s)
Fármacos Anti-VIH/análisis , Fármacos Anti-VIH/farmacología , Evaluación Preclínica de Medicamentos/métodos , Transcriptasa Inversa del VIH/antagonistas & inhibidores , VIH/efectos de los fármacos , VIH/enzimología , Inhibidores de la Transcriptasa Inversa/análisis , Inhibidores de la Transcriptasa Inversa/farmacología , Fármacos Anti-VIH/química , Transcriptasa Inversa del VIH/metabolismo , Ligandos , Pruebas de Sensibilidad Microbiana , Simulación del Acoplamiento Molecular , Simulación de Dinámica Molecular , Estructura Molecular , Inhibidores de la Transcriptasa Inversa/química
19.
Nucleic Acids Res ; 44(8): e74, 2016 05 05.
Artículo en Inglés | MEDLINE | ID: mdl-26762982

RESUMEN

During HIV-1 reverse transcription, the single-stranded RNA genome is converted into proviral double stranded DNA by Reverse Transcriptase (RT) within a reverse transcription complex composed of the genomic RNA and a number of HIV-1 encoded proteins, including the nucleocapsid protein NCp7. Here, we developed a one-step and one-pot RT polymerization assay. In this in vitro assay, RT polymerization is monitored in real-time by Förster resonance energy transfer (FRET) using a commercially available doubly-labeled primer/template DNA. The assay can monitor and quantify RT polymerization activity as well as its promotion by NCp7. Z-factor values as high as 0.89 were obtained, indicating that the assay is suitable for high-throughput drug screening. Using Nevirapine and AZT as prototypical RT inhibitors, reliable IC50 values were obtained from the changes in the RT polymerization kinetics. Interestingly, the assay can also detect NCp7 inhibitors, making it suitable for high-throughput screening of drugs targeting RT, NCp7 or simultaneously, both proteins.


Asunto(s)
Fármacos Anti-VIH/farmacología , Transferencia Resonante de Energía de Fluorescencia/métodos , Transcriptasa Inversa del VIH/antagonistas & inhibidores , Ensayos Analíticos de Alto Rendimiento/métodos , Nevirapina/farmacología , Inhibidores de la Transcriptasa Inversa/farmacología , Zidovudina/farmacología , Productos del Gen gag del Virus de la Inmunodeficiencia Humana/antagonistas & inhibidores , ADN Viral/genética , Evaluación Preclínica de Medicamentos , VIH-1/efectos de los fármacos , Humanos , ARN Viral/genética
20.
Bing Du Xue Bao ; 32(4): 417-22, 2016 07.
Artículo en Chino | MEDLINE | ID: mdl-29979545

RESUMEN

To investigate the in vitro anti-HIV-1effect of the aqueous extracts of Cordyceps sinensis. The aqueous stroma and sclerotium extracts were isolated from the fresh and dry Cordyceps sinensis specimen, respectively. The CCK-8test and the TZM-bl pseudovirus assay were used to examine the in-vitro cytotoxicity and anti-HIV-1activities of extracts. In addition, the reverse-transcriptase enzyme-activity assay and the surface plasma resonance(SPR)technology were taken to study the inhibition on the activity of reverse transcriptase and interaction with Vif protein. All 5aqueous extracts of Cordyceps sinensis exhibited in vitro anti-HIV-1effects,extracts from the fresh fungus showed more potent effect in inhibiting reverse-transcriptase activity than the dry fungus. Furthermore, a strong interaction was observed between the fresh stroma extract and Vif protein.The study clarified that the in vitro anti-HIV-1activity of the aqueous extracts of Cordyceps sinensis, may be mediated through inhibition of reverse-transcriptase activity and interaction with Vif protein.


Asunto(s)
Fármacos Anti-VIH/farmacología , Cordyceps/química , VIH-1/efectos de los fármacos , Extractos Vegetales/farmacología , Animales , Infecciones por VIH/virología , Transcriptasa Inversa del VIH/antagonistas & inhibidores , Transcriptasa Inversa del VIH/genética , Transcriptasa Inversa del VIH/metabolismo , VIH-1/enzimología , VIH-1/genética , Humanos , Mariposas Nocturnas/microbiología , Unión Proteica/efectos de los fármacos , Productos del Gen vif del Virus de la Inmunodeficiencia Humana/genética , Productos del Gen vif del Virus de la Inmunodeficiencia Humana/metabolismo
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