Draft genome of the medicinal tea tree Melaleuca alternifolia.

BACKGROUND: Melaleuca alternifolia is a commercially important medicinal tea tree native to Australia. Tea tree oil, the essential oil distilled from its branches and leaves, has broad-spectrum germicidal activity and is highly valued in the pharmaceutical and cosmetic industries. Thus, the study of genome, which can provide reference for the investigation of genes involved in terpinen-4-ol biosynthesis, is quite crucial for improving the productivity of Tea tree oil. METHODS AND RESULTS: In our study, the next-generation sequencing was used to investigate the whole genome of Melaleuca alternifolia. About 114 Gb high quality sequence data were obtained and assembled into 1,838,159 scafolds with an N50 length of 1021 bp. The assembled genome size is about 595 Mb, twice of that predicted by flow cytometer (300 Mb) and k-mer analysis (345 Mb). Benchmarking Universal Single-Copy Orthologs analyses indicated that only 11.3% of the conserved single-copy genes were miss. Repetitive regions cover over 40.43% of the genome. A total of 44,369 protein-coding genes were predicted and annotated against Nr, Swissprot, Refseq, COG, KOG, and KEGG database. Among these genes, 32,909 and 16,241 genes were functionally annotated in Nr and KEGG, respectively. Moreover, 29,411 and 14,435 genes were functionally annotated in COG and KOG. Additionally, 457,661 simple sequence repeats and 1109 transcription factors (TFs) form 67 TF families were identified in the assembled genome. CONCLUSION: Our findings provide a draft genome sequencing of M. alternifolia which can act as a reference for the deep sequencing strategies, and are useful for future functional and comparative genomics analyses.

Effects of dietary dandelion extracts on growth performance, body composition, plasma biochemical parameters, immune responses and disease resistance of juvenile golden pompano Trachinotus ovatus.

The present study was conducted to investigate the effects of dietary dandelion extracts (DE) supplementation on growth performance, feed utilization, body composition, plasma biochemical indices, immune responses, hepatic antioxidant abilities, and resistance to the pathogen Vibrio harveyi in Trachinotus ovatus. A basal diet supplemented with DE at 0, 0.50, 1.00, 2.00, 4.00 and 10.00 g kg-1 were fed to golden pompano for 8 weeks. The study indicated that dietary supplementation with DE could significantly improve final body weight (FBW), weight gain rate (WGR), specific growth rate (SGR), feed efficiency ratio (FER), feed intake (FI), protein efficiency ratio (PER) and protein deposit rate (PDR) (P < 0.05). The highest FBW, WGR, SGR, FI and PDR were observed in fish fed 1.00 g kg-1 dietary DE (P < 0.05). The highest FER and PER were recorded at 0.50 g kg-1 dietary DE (P < 0.05). Condition factor, viscerosomatic index, hepatosomatic index and survival were not significantly different among all groups. Fish fed 1.00 g kg-1 dietary DE showed significant increase in plasma total protein, complement 4 content and alkaline phosphatase, lysozyme, glutathione reductase (GSR) activity, but significant decrease in triglyceride, low density lipoprotein cholesterol, malondialdehyde (MDA) content and aspartate aminotransferase activities compared to the control group (P < 0.05). Hepatic antioxidant enzymes (SOD, T-AOC, CAT, GSH-Px, GSR) significantly increased whereas MDA content significantly decreased in fish fed 1.00 g kg-1 DE supplement (P < 0.05). After challenge with Vibrio harveyi, significant higher post-challenge survival was observed in fish fed DE supplement (P < 0.05). These results indicated that golden pompano fed a diet supplemented with DE (especially at 1.00 g kg-1 of fed supplement) could significantly promote its growth performance, feed utilization, body protein deposit, immune ability, hepatic and plasma antioxidative enzyme activities and improve its resistance to infection by Vibrio harveyi.