Determination of phenol biodegradation pathways in three psychrotolerant yeasts, Candida subhashii A011, Candida oregonensis B021 and Schizoblastosporion starkeyi-henricii L012, isolated from Rucianka peatland.

In this study, three psychrotolerant phenol-degrading yeast strains Candida subhashii (strain A011), Candida oregonenis (strain B021) and Schizoblastosporion starkeyi-henricii (strain L012) isolated from Rucianka peatland were examined to determine which alternative metabolic pathway for phenol biodegradation is used by these microorganisms. All yeast strains were cultivated in minimal salt medium supplemented with phenol at 500, 750 and 1000 mg l-1 concentration with two ways of conducting phenol biodegradation experiments: with and without the starving step of yeast cells. For studied yeast strains, no catechol 2,3-dioxygenase activities were detected by enzymatic assay and no products of catechol meta-cleavage in yeast cultures supernatants (GC-MS analysis), were detected. The detection of catechol 1,2-dioxygenase activity and the presence of cis,cis-muconic acid in the analyzed samples revealed that all studied psychrotolerant yeast strains were able to metabolize phenol via the ortho-cleavage pathway. Therefore, they may be tested in terms of their use to develop biotechnology for the production of cis,cis-muconic acid, a substrate used in the production of plastics (PET) and other valuable goods.

N-phosphonomethylglycine utilization by the psychrotolerant yeast Solicoccozyma terricola M 3.1.4.

Solicoccozyma terricola M 3.1.4., the yeast strain isolated from soil sample from blueberry cultivation in Miedzyrzec Podlaski in Poland, is capable to split of phosphorus to nitrogen and nitrogen to carbon bonds in N-phosphonomethylglycine (PMG, glyphosate). The biodegradation process proceeds in the phosphate-independent manner. It is the first example of a psychrotolerant yeast strain able to degrade PMG via CN bond cleavage accompanied by AMPA formation and not like in most microorganisms via CP bond disruption followed by the sarcosine pathway. Glyphosate oxidoreductase (GOX) type activity was detected in cell-free extracts prepared from S. terricola M 3.1.4. pregrown on 4 mM PMG as a sole phosphorus and nitrogen source in cultivation medium.

An MTA phosphorylase gene discovered in the metagenomic library derived from Antarctic top soil during screening for lipolytic active clones confers strong pink fluorescence in the presence of rhodamine B.

In this work, we present the construction of a metagenomic library in Escherichia coli using the pUC19 vector and environmental DNA directly isolated from Antarctic topsoil and screened for lipolytic enzymes. Unexpectedly, the screening on agar supplemented with olive oil and rhodamine B revealed one unusual pink fluorescent clone (PINKuv) out of 85 000 clones. This clone harbored a plasmid, pPINKuv, which has an insert of 8317 bp that has been completely sequenced. Further analysis of the insert showed eight ORFs. Three ORFs among these exhibited similarities to Psychrobacter arcticus genes. A nucleotide sequence designated as ORF4 encoded a protein with 93% identity to the methylthioadenosine phosphorylase of P. arcticus. This protein was responsible for the observed pink fluorescence of the PINKuv clone in the presence of rhodamine B. We found that colonies of recombinant E. coli TOP10F'/pUC19-ORF4 strain showed pink fluorescence under UV illumination on the Luria-Bertani agar supplemented with rhodamine B after culturing at 25, 30 and 37 degrees C. The same effect was achieved using other E. coli strains such as DH5alpha, LMG194, JM101 and BL21(DE3) pLysS. The results presented here will provide the basis for further studies on the use of the discovered gene as a new reporter gene for molecular biology applications.