Insights on SNP types, detection methods and their utilization in Brassica species: Recent progress and future perspectives.

The genus Brassica, family Brassicaceae (Cruciferae), comprises many important species of oil crops, vegetables and medicinal plants including B. rapa, B. oleracea, B. nigra, B. napus, B. juncea, B. carinata. Genomic researches in Brassica species is constrained by polyploidization, mainly due to its complicated genomic structure. However, rapid development of methods for detecting single nucleotide polymorphisms (SNP), such as next generation sequencing and SNP microarray, has accelerated release of reference Brassica species genomes as well as discovery of large numbers and genome-wide SNPs, thus intensifying forward genetics in this genus. In this review, we summarize biological characteristics, classification and various methods for detecting SNPs, focusing on high-throughput techniques. Moreover, we describe the pivotal roles of SNPs in genetic diversity, linkage map construction and QTL mapping, comparative genomics, linkage disequilibrium and genome-wide association studies. These insights are expected to deepen our understanding and guide further advancements in Brassica species research.

Selenium mitigates the chromium toxicity in Brassicca napus L. by ameliorating nutrients uptake, amino acids metabolism and antioxidant defense system.

The phytotoxicity of chromium (Cr) makes it obligatory for the researchers to develop strategies that seek to hinder its accumulation in food chains. While, protective role of selenium (Se) has not been discussed in detail under adverse conditions in oilseed rape. Here, our aim was to investigate the potential use of Se (0, 5 and 10 µM) in alleviating the Cr toxicity (0, 100 and 200 µM) in Brassica napus L. Results delineated that Se-supplementation notably recovered the Cr-phytotoxicity by reducing the Cr accumulation in plant tissues and boosted the inhibition in plant growth and biomass. Under Cr stress, the exogenously applied Se significantly recovered the impairment in photosynthesis related parameters (chlorophyll a, chlorophyll b, carotenoids, net photosynthetic rate, stomatal conductance, and photochemical efficiency of photosystem II), and counteracted the reduction in nutrients uptake and improved the essential amino acids (EAAs) levels. In addition, Se activated the antioxidants enzymes included in AsA-GSH cycle (SOD, CAT, APX, GR, DHAR, MDHAR, GSH, and AsA) and glyoxalase (Gly) system (Gly I and Gly II) and minimized the excessive generation of reactive oxygen species (ROS) and methylglyoxal (MG) contents in response to Cr stress. In a nutshell, Se (more effective at 5 µM) alleviated the Cr and MG induced phytotoxicity and oxidative damages by minimizing their (Cr and MG) accumulation and enhanced the plant growth, nutrients element level, nutrition quality by improving EAAs, antioxidant and Gly system. By considering the above-mentioned biomarkers, the addition of exogenous Se in Cr polluted soils might be effective approach to decrease the Cr uptake and its linked phytotoxicity in B. napus.

Protective mechanisms of melatonin against selenium toxicity in Brassica napus: insights into physiological traits, thiol biosynthesis and antioxidant machinery.

BACKGROUND: The ubiquitous signaling molecule melatonin (N-acetyl-5-methoxytryptamine) (MT) plays vital roles in plant development and stress tolerance. Selenium (Se) may be phytotoxic at high concentrations. Interactions between MT and Se (IV) stress in higher plants are poorly understood. The aim of this study was to evaluate the defensive roles of exogenous MT (0 µM, 50 µM, and 100 µM) against Se (IV) (0 µM, 50 µM, 100 µM, and 200 µM) stress based on the physiological and biochemical properties, thiol biosynthesis, and antioxidant system of Brassica napus plants subjected to these treatments. RESULTS: Se (IV) stress inhibited B. napus growth and biomass accumulation, reduced pigment content, and lowered net photosynthetic rate (Pn) and PSII photochemical efficiency (Fv/Fm) in a dose-dependent manner. All of the aforementioned responses were effectively alleviated by exogenous MT treatment. Exogenous MT mitigated oxidative damage and lipid peroxidation and protected the plasma membranes from Se toxicity by reducing Se-induced reactive oxygen species (ROS) accumulation. MT also alleviated osmotic stress by restoring foliar water and sugar levels. Relative to standalone Se treatment, the combination of MT and Se upregulated the ROS-detoxifying enzymes SOD, APX, GR, and CAT, increased proline, free amino acids, and the thiol components GSH, GSSG, GSH/GSSG, NPTs, PCs, and cys and upregulated the metabolic enzymes γ-ECS, GST, and PCS. Therefore, MT application attenuates Se-induce oxidative damage in plants. MT promotes the accumulation of chelating agents in the roots, detoxifies Se there, and impedes its further translocation to the leaves. CONCLUSIONS: Exogenous MT improves the physiological traits, antioxidant system, and thiol ligand biosynthesis in B. napus subjected to Se stress primarily by enhancing Se detoxification and sequestration especially at the root level. Our results reveal better understanding of Se-phytotoxicity and Se-stress alleviation by the adequate supply of MT. The mechanisms of MT-induced plant tolerance to Se stress have potential implications in developing novel strategies for safe crop production in Se-rich soils.

Dual behavior of selenium: Insights into physio-biochemical, anatomical and molecular analyses of four Brassica napus cultivars.

Selenium (Se) is a prerequisite metalloid for humans and animals. But, its essentialness or phytotoxicity is still obscure. Here, we investigated the dual effects of sodium selenite (0, 25, 50 or 100 µM) on the physio-biochemical, anatomical and molecular alterations in different Brassicca napus L. cultivars (viz. Zheda 619, Zheda 622, ZY 50, and ZS 758). Findings revealed that Se-supplementation markedly boosted the plant growth and biomasses by improving mineral uptake, water-soluble protein, sugar, photosynthetic efficiency regarding the pigments and gas exchange parameters. Higher Se-levels impaired the photosynthetic efficiency, deplete nutrients-uptake, osmotic stress by proline accumulation and higher Se-accumulation in roots led to growth and biomass reduction. Se-supplementation minimized the accumulation of ROS (hydrogen peroxide, superoxide radical), malondialdehyde and methylglyoxal (MG) levels by activating the enzymes engaged in AsA-GSH cycle and ROS-MG detoxification. But, elevated-Se impaired the oxidative metabolism by desynchronizing the antioxidants as revealed by decreasing levels of ascorbic acid, activities and expression levels of catalase, glutathione reductase, and dehydro-ascorbate reductase. Up-regulation of secondary metabolites genes (PAL, PPO) revealed the role of Se in regulating transcriptional networks involved in oxidative stress. The damages in leaf and root ultra-structures disclosed the Se-phytotoxicity. Together, outcomes uncovered the protective mechanism of Se (till 25 µM) by reinforcing the plant morphology, photosynthesis, osmo-protection, redox balance, enzyme activities for ROS-MG detoxification by reducing ROS and MG components. Excessive-Se prompt phytotoxicity by impairing above mentioned parameters, especially at 100 µM Se. Among all B. napus cultivars, Zheda 622 was discovered as highly-susceptible and ZS 758 showed greatest-tolerance against Se stress.

Comparative orchestrating response of four oilseed rape (Brassica napus) cultivars against the selenium stress as revealed by physio-chemical, ultrastructural and molecular profiling.

Selenium (Se) is an essential micro-element for human and animals. In higher plants, Se essentiality or phyto-toxicity is less explored. Therefore, we aimed to examine the effects of Se (0, 25, 50, and 100 µM) as sodium selenite on the physio-chemical, cell ultra-structural and genomic alterations in hydroponically grown seedlings of four cultivars of B. napus (cvs. Zheda 619, Zheda 622, ZS 758, and ZY 50). Results showed that excessive (100 µM) Se (IV) exhibited significant reduction in plant growth parameters, declined pigment contents, lower water-soluble protein levels, and overproduction of H2O2 and MDA contents. A significant increase in antioxidant enzyme activities and transcript levels of superoxide dismutase (SOD), peroxidase (POD), ascorbate peroxidase (APX), and glutathione reductase (GR), except catalase (CAT) were noticed in the leaves and roots. Non-enzymatic antioxidants including glutathione (GSH) and oxidized glutathione (GSSG), except GSSG in roots were enhanced under higher Se (IV) levels. Transmission electron microscopy analysis revealed the ultrastructural damages in leaf mesophyll and root tip cells induced by excessive Se (IV). Less-significant phytotoxic effects were observed in above-mentioned parameters at 50 µM Se (IV). Overall, Se (IV) supplementation at 25 µM displayed marginal beneficial effect by enhancing plant growth, pigment contents, protein levels and restrict H2O2 and MDA overproduction. A marginal increase/decrease in ROS-detoxifying enzymes (except CAT activity) and elevated GSH and GSSG levels were noticed. The accumulation of Se (IV) was much higher in roots as compared to leaves. This accumulation was maximum in Zheda 622 and minimum in ZS 758, followed by Zheda 619 and ZY 50. Overall findings showed that Zheda 622 was the most sensitive and ZS 758 as most tolerant to Se (IV) phyto-toxicity. In addition, Se (IV) was found beneficial until 25 µM Se (IV) but phytotoxic at higher Se levels especially at 100 µM Se (IV).