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1.
Dev Cell ; 57(2): 246-259.e4, 2022 01 24.
Artigo em Inglês | MEDLINE | ID: mdl-35026163

RESUMO

N6-methyladenosine (m6A) RNA modification confers an essential layer of gene regulation in living organisms, including plants; yet, the underlying mechanisms of its deposition on specific target mRNAs involved in key plant developmental processes are so far unknown. Here, we show that a core component of the rice m6A methyltransferase complex, OsFIP37, is recruited by an RNA-binding protein, OsFIP37-associated protein 1 (OsFAP1), to mediate m6A RNA modification on an auxin biosynthesis gene, OsYUCCA3, during microsporogenesis. This stabilizes OsYUCCA3 mRNA and promotes local auxin biosynthesis in anthers during male meiosis, which is essential for meiotic division and subsequent pollen development in rice. Loss of function of OsFAP1 causes dissociation of OsFIP37 with OsYUCCA3 and the resulting abolished m6A deposition on OsYUCCA3. Our findings reveal that OsFAP1-dependent m6A deposition on OsYUCCA3 by OsFIP37 constitutes a hitherto unknown link between RNA modification and hormonal control of male meiosis in plant reproductive development.


Assuntos
Adenosina/análogos & derivados , Ácidos Indolacéticos/metabolismo , Meiose/genética , Adenosina/química , Adenosina/metabolismo , Flores/genética , Expressão Gênica/genética , Regulação da Expressão Gênica de Plantas/genética , Oryza/genética , Oryza/metabolismo , Desenvolvimento Vegetal/genética , Proteínas de Plantas/metabolismo , Pólen/genética , RNA/genética , RNA/metabolismo , RNA Mensageiro/genética , Proteínas de Ligação a RNA/metabolismo
2.
Plant J ; 109(3): 664-674, 2022 02.
Artigo em Inglês | MEDLINE | ID: mdl-34783104

RESUMO

Plants use electrical and chemical signals for systemic communication. Herbivory, for instance, appears to trigger local apoplasmic glutamate accumulation, systemic electrical signals, and calcium waves that travel to report insect damage to neighboring leaves and initiate defense. To monitor extra- and intracellular glutamate concentrations in plants, we generated Arabidopsis lines expressing genetically encoded fluorescent glutamate sensors. In contrast to cytosolically localized sensors, extracellularly displayed variants inhibited plant growth and proper development. Phenotypic analyses of high-affinity display sensor lines revealed that root meristem development, particularly the quiescent center, number of lateral roots, vegetative growth, and floral architecture were impacted. Notably, the severity of the phenotypes was positively correlated with the affinity of the display sensors, intimating that their ability to sequester glutamate at the surface of the plasma membrane was responsible for the defects. Root growth defects were suppressed by supplementing culture media with low levels of glutamate. Together, the data indicate that sequestration of glutamate at the cell surface either disrupts the supply of glutamate to meristematic cells and/or impairs localized glutamatergic signaling important for developmental processes.


Assuntos
Arabidopsis/crescimento & desenvolvimento , Arabidopsis/metabolismo , Membrana Celular/metabolismo , Ácido Glutâmico/genética , Ácido Glutâmico/metabolismo , Desenvolvimento Vegetal/genética , Folhas de Planta/metabolismo , Regulação da Expressão Gênica de Plantas , Genes de Plantas , Desenvolvimento Vegetal/efeitos dos fármacos , Folhas de Planta/genética
3.
Mol Plant ; 15(1): 104-124, 2022 01 03.
Artigo em Inglês | MEDLINE | ID: mdl-34954444

RESUMO

Phosphorus (P) is an essential nutrient for plant growth and reproduction. Plants preferentially absorb P as orthophosphate (Pi), an ion that displays low solubility and that is readily fixed in the soil, making P limitation a condition common to many soils and Pi fertilization an inefficient practice. To cope with Pi limitation, plants have evolved a series of developmental and physiological responses, collectively known as the Pi starvation rescue system (PSR), aimed to improve Pi acquisition and use efficiency (PUE) and protect from Pi-starvation-induced stress. Intensive research has been carried out during the last 20 years to unravel the mechanisms underlying the control of the PSR in plants. Here we review the results of this research effort that have led to the identification and characterization of several core Pi starvation signaling components, including sensors, transcription factors, microRNAs (miRNAs) and miRNA inhibitors, kinases, phosphatases, and components of the proteostasis machinery. We also refer to recent results revealing the existence of intricate signaling interplays between Pi and other nutrients and antagonists, N, Fe, Zn, and As, that have changed the initial single-nutrient-centric view to a more integrated view of nutrient homeostasis. Finally, we discuss advances toward improving PUE and future research priorities.


Assuntos
Adaptação Fisiológica/genética , Regulação da Expressão Gênica de Plantas/efeitos dos fármacos , Fósforo/deficiência , Fósforo/metabolismo , Desenvolvimento Vegetal/efeitos dos fármacos , Reguladores de Crescimento de Plantas/metabolismo , Transdução de Sinais/efeitos dos fármacos , Genes de Plantas , Desenvolvimento Vegetal/genética , Reguladores de Crescimento de Plantas/genética
4.
Int J Mol Sci ; 22(24)2021 Dec 16.
Artigo em Inglês | MEDLINE | ID: mdl-34948331

RESUMO

The potato (Solanum tuberosum L.), one of the most important food crops worldwide, is sensitive to environmental stresses. Sensor-responder complexes comprising calcineurin B-like (CBL) proteins and CBL-interacting protein kinases (CIPKs) not only modulate plant growth and development but also mediate numerous stress responses. Here, using a Hidden Markov Model and BLAST searches, 27 CIPK genes were identified in potato and divided into five groups by phylogenetic analysis and into two clades (intron-poor and intron-rich) by gene structure analysis. Quantitative reverse-transcription PCR (qRT-PCR) assays revealed that StCIPK genes play important roles in plant growth, development and abiotic stress tolerance. Up-regulated expression of StCIPK10 was significantly induced by drought, PEG6000 and ABA. StCIPK10 enhances both the ability of potato to scavenge reactive oxygen species and the content of corresponding osmoregulation substances, thereby strengthening tolerance to drought and osmotic stress. StCIPK10 is located at the intersection between the abscisic acid and abiotic stress signaling pathways, which control both root growth and stomatal closure in potato. In addition, StCIPK10 interacts with StCBL1, StCBL4, StCBL6, StCBL7, StCBL8, StCBL11 and StCBL12, and is specifically recruited to the plasma membrane by StCBL11.


Assuntos
Genoma de Planta/genética , Pressão Osmótica/fisiologia , Proteínas de Plantas/genética , Solanum tuberosum/genética , Estresse Fisiológico/genética , Ácido Abscísico/metabolismo , Secas , Perfilação da Expressão Gênica/métodos , Regulação da Expressão Gênica de Plantas/genética , Estudo de Associação Genômica Ampla/métodos , Família Multigênica/genética , Filogenia , Desenvolvimento Vegetal/genética , Transdução de Sinais/genética
5.
BMC Plant Biol ; 21(1): 520, 2021 Nov 09.
Artigo em Inglês | MEDLINE | ID: mdl-34753417

RESUMO

BACKGROUND: Brassica napus is the third leading source of edible oil in the world. Genic male sterility (GMS) lines provide crucial material for harnessing heterosis for rapeseed. GMS lines have been used successfully for rapeseed hybrid production in China. MicroRNAs (miRNAs) play crucial regulatory roles in various plant growth, development, and stress response processes. However, reports on miRNAs that regulate the pollen development of GMS lines in B. napus are few. RESULTS: In this study, 12 small RNA and transcriptome libraries were constructed and sequenced for the flower buds from the fertile and sterile lines of two recessive GMS (RGMS) lines, namely, "6251AB" and "6284AB". At the same time, 12 small RNA and transcriptome libraries were also constructed and sequenced for the flower buds from the fertile and sterile lines of two dominant GMS (DGMS) lines, namely, "4001AB" and "4006AB". Based on the results, 46 known miRNAs, 27 novel miRNAs on the other arm of known pre-miRNAs, and 44 new conserved miRNAs were identified. Thirty-five pairs of novel miRNA-3p/miRNA-5p were found. Among all the identified miRNAs, fifteen differentially expressed miRNAs with over 1.5-fold change between flower buds of sterile and fertile lines were identified, including six differentially expressed miRNAs between "4001A" and "4001B", two differentially expressed miRNAs between "4006A" and "4006B", four differentially expressed miRNAs between "6251A" and "6251B", and ten differentially expressed miRNAs between "6284A" and "6284B". The correlation analysis of small RNA and transcriptome sequencing was conducted. And 257 candidate target genes were predicted for the 15 differentially expressed miRNAs. The results of 5' modified RACE indicated that BnaA09g48720D, BnaA09g11120D, and BnaCnng51960D were cleaved by bna-miR398a-3p, bna-miR158-3p and bna-miR159a, respectively. Among the differentially expressed miRNAs, miR159 was chosen to analyze its function. Overexpression of bna-miR159 in Arabidopsis resulted in decreased seed setting rate, and shortened siliques, illustrating that miR159 may regulate the fertility and silique development in rapeseed. CONCLUSIONS: Our findings provide an overview of miRNAs that are potentially involved in GMS and pollen development. New information on miRNAs and their related target genes are provided to exploit the GMS mechanism and reveal the miRNA networks in B. napus.


Assuntos
Brassica napus/genética , MicroRNAs/fisiologia , Infertilidade das Plantas/genética , Pólen/genética , RNA de Plantas/fisiologia , Brassica napus/crescimento & desenvolvimento , Biblioteca Gênica , Desenvolvimento Vegetal/genética , Transcriptoma
6.
BMC Plant Biol ; 21(1): 521, 2021 Nov 09.
Artigo em Inglês | MEDLINE | ID: mdl-34753426

RESUMO

BACKGROUND: Shoot branching is one of the important agronomic traits affecting yields and quality of tea plant (Camellia sinensis). Cytokinins (CTKs) play critical roles in regulating shoot branching. However, whether and how differently alternative splicing (AS) variant of CTKs-related genes can influence shoot branching of tea plant is still not fully elucidated. RESULTS: In this study, five AS variants of CTK biosynthetic gene adenylate isopentenyltransferase (CsA-IPT5) with different 3' untranslated region (3' UTR) and 5' UTR from tea plant were cloned and investigated for their regulatory effects. Transient expression assays showed that there were significant negative correlations between CsA-IPT5 protein expression, mRNA expression of CsA-IPT5 AS variants and the number of ATTTA motifs, respectively. Shoot branching processes induced by exogenous 6-BA or pruning were studied, where CsA-IPT5 was demonstrated to regulate protein synthesis of CsA-IPT5, as well as the biosynthesis of trans-zeatin (tZ)- and isopentenyladenine (iP)-CTKs, through transcriptionally changing ratios of its five AS variants in these processes. Furthermore, the 3' UTR AS variant 2 (3AS2) might act as the predominant AS transcript. CONCLUSIONS: Together, our results indicate that 3AS2 of the CsA-IPT5 gene is potential in regulating shoot branching of tea plant and provides a gene resource for improving the plant-type of woody plants.


Assuntos
Alquil e Aril Transferases/fisiologia , Camellia sinensis/enzimologia , Camellia sinensis/crescimento & desenvolvimento , Regiões 3' não Traduzidas , Alquil e Aril Transferases/genética , Camellia sinensis/genética , Clonagem Molecular , DNA de Plantas , Motivos de Nucleotídeos , Desenvolvimento Vegetal/genética , Brotos de Planta/genética , Brotos de Planta/crescimento & desenvolvimento , Análise de Sequência de DNA
7.
Int J Mol Sci ; 22(22)2021 Nov 21.
Artigo em Inglês | MEDLINE | ID: mdl-34830436

RESUMO

Laccase (LAC) plays important roles in different plant development and defense processes. In this study, we identified laccase genes (CsLACs) in Camellia sinensis cv 'Longjing43' cultivars, which were classified into six subclades. The expression patterns of CsLACs displayed significant spatiotemporal variations across different tissues and developmental stages. Most members in subclades II, IV and subclade I exhibited contrasting expression patterns during leaf development, consistent with a trade-off model for preferential expression in the early and late developmental stages. The extensive transcriptional changes of CsLACs under different phytohormone and herbivore treatment were observed and compared, with the expression of most genes in subclades I, II and III being downregulated but genes in subclades IV, V and VI being upregulated, suggesting a growth and defense trade-off model between these subclades. Taken together, our research reveal that CsLACs mediate multi-perspective trade-offs during tea plant development and defense processes and are involved in herbivore resistance in tea plants. More in-depth research of CsLACs upstream regulation and downstream targets mediating herbivore defense should be conducted in the future.


Assuntos
Camellia sinensis/genética , Lacase/genética , Desenvolvimento Vegetal/genética , Folhas de Planta/genética , Camellia sinensis/crescimento & desenvolvimento , Resistência à Doença/genética , Regulação da Expressão Gênica de Plantas/genética , Lacase/classificação , Família Multigênica/genética , Filogenia , Doenças das Plantas/genética , Reguladores de Crescimento de Plantas/genética , Folhas de Planta/crescimento & desenvolvimento , Proteínas de Plantas/genética , Estresse Fisiológico/genética , Distribuição Tecidual/genética
8.
Genes (Basel) ; 12(10)2021 09 24.
Artigo em Inglês | MEDLINE | ID: mdl-34680888

RESUMO

Cyperus esculentus is widely representing one of the important oil crops around the world, which provides valuable resources of edible tubers called tiger nut. The chemical composition and high ability to produce fats emphasize the role of tiger nut in promoting oil crop productivity. However, the underlying molecular mechanism of the production and accumulation of lipids in tiger nut development still remains unclear. Here, we conducted comprehensive transcriptomics and lipidomics analyses at different developmental stages of tuber in Cyperus esculentus. Lipidomic analyses confirmed that the accumulation of lipids including glycolipids, phospholipids, and glycerides were significantly enriched during tuber development from early to mature stage. The proportion of phosphatidylcholines (PC) declined during all stages and phosphatidyl ethanolamine (PE) was significantly declined in early and middle stages. These findings implied that PC is actively involved in triacylglycerol (TAG) biosynthesis during the tubers development, whereas PE may participate in TAG metabolism during early and middle stages. Comparative transcriptomics analyses indicated several genomic and metabolic pathways associated with lipid metabolism during tuber development in tiger nut. The Pearson correlation analysis showed that TAG synthesis in different developmental stages was attributed to 37 candidate transcripts including CePAH1. The up-regulation of diacylglycerol (DAG) and oil content in yeast, resulted from the inducible expression of exogenous CePAH1 confirmed the central role of this candidate gene in lipid metabolism. Our results demonstrated the foundation of an integrative metabolic model for understanding the molecular mechanism of tuber development in tiger nut, in which lipid biosynthesis plays a central role.


Assuntos
Cyperus/genética , Lipídeos/biossíntese , Tubérculos/genética , Transcriptoma/genética , Cyperus/crescimento & desenvolvimento , Regulação da Expressão Gênica de Plantas/genética , Metabolismo dos Lipídeos/genética , Lipidômica , Lipídeos/genética , Lipogênese/genética , Desenvolvimento Vegetal/genética , Óleos de Plantas/metabolismo , Tubérculos/crescimento & desenvolvimento
9.
Genes (Basel) ; 12(7)2021 06 26.
Artigo em Inglês | MEDLINE | ID: mdl-34206830

RESUMO

Floral patterning is a complex task. Various organs and tissues must be formed to fulfill reproductive functions. Flower development has been studied, mainly looking for master regulators. However, downstream changes such as the cell wall composition are relevant since they allow cells to divide, differentiate, and grow. In this review, we focus on the main components of the primary cell wall-cellulose, hemicellulose, and pectins-to describe how enzymes involved in the biosynthesis, modifications, and degradation of cell wall components are related to the formation of the floral organs. Additionally, internal and external stimuli participate in the genetic regulation that modulates the activity of cell wall remodeling proteins.


Assuntos
Parede Celular/genética , Flores/genética , Desenvolvimento Vegetal/genética , Reprodução/genética , Parede Celular/metabolismo , Celulose/genética , Flores/crescimento & desenvolvimento , Regulação da Expressão Gênica de Plantas , Pectinas/genética , Polissacarídeos/genética
10.
Plant Signal Behav ; 16(7): 1913310, 2021 07 03.
Artigo em Inglês | MEDLINE | ID: mdl-33853500

RESUMO

Phosphate (Pi) deficiency is one of the major adverse factors limiting plant growth and production. Enhanced RH development is thought to be the typical root morphological response under Pi deficiency, which will enhance the utilization of Pi resources from soil. Here, we report that MYB30-EIN3 module is functionally implicated in Pi deficiency-induced RH development in Arabidopsis. MYB30 and EIN3 antagonistically regulate RH growth via transcriptional regulation of RSL4 as well as other PSR genes, resulting in fine-tuned Pi uptake under Pi deficiency.


Assuntos
Proteínas de Arabidopsis/fisiologia , Arabidopsis/metabolismo , Proteínas de Ligação a DNA/fisiologia , Fósforo/metabolismo , Raízes de Plantas/metabolismo , Fatores de Transcrição/fisiologia , Arabidopsis/genética , Proteínas de Arabidopsis/genética , Fatores de Transcrição Hélice-Alça-Hélice Básicos/genética , Regulação da Expressão Gênica de Plantas , Desenvolvimento Vegetal/genética , Raízes de Plantas/crescimento & desenvolvimento
11.
BMC Plant Biol ; 21(1): 132, 2021 Mar 09.
Artigo em Inglês | MEDLINE | ID: mdl-33750309

RESUMO

BACKGROUND: Tartary buckwheat seed development is an extremely complex process involving many gene regulatory pathways. MicroRNAs (miRNAs) have been identified as the important negative regulators of gene expression and performed crucial regulatory roles in various plant biological processes. However, whether miRNAs participate in Tartary buckwheat seed development remains unexplored. RESULTS: In this study, we first identified 26 miRNA biosynthesis genes in the Tartary buckwheat genome and described their phylogeny and expression profiling. Then we performed small RNA (sRNA) sequencing for Tartary buckwheat seeds at three developmental stages to identify the miRNAs associated with seed development. In total, 230 miRNAs, including 101 conserved and 129 novel miRNAs, were first identified in Tartary buckwheat, and 3268 target genes were successfully predicted. Among these miRNAs, 76 exhibited differential expression during seed development, and 1534 target genes which correspond to 74 differentially expressed miRNAs (DEMs) were identified. Based on integrated analysis of DEMs and their targets expression, 65 miRNA-mRNA interaction pairs (25 DEMs corresponding to 65 target genes) were identified that exhibited significantly opposite expression during Tartary buckwheat seed development, and 6 of the miRNA-mRNA pairs were further verified by quantitative real-time polymerase chain reaction (qRT-PCR) and ligase-mediated rapid amplification of 5' cDNA ends (5'-RLM-RACE). Functional annotation of the 65 target mRNAs showed that 56 miRNA-mRNA interaction pairs major involved in cell differentiation and proliferation, cell elongation, hormones response, organogenesis, embryo and endosperm development, seed size, mineral elements transport, and flavonoid biosynthesis, which indicated that they are the key miRNA-mRNA pairs for Tartary buckwheat seed development. CONCLUSIONS: Our findings provided insights for the first time into miRNA-mediated regulatory pathways in Tartary buckwheat seed development and suggested that miRNAs play important role in Tartary buckwheat seed development. These findings will be help to study the roles and regulatory mechanism of miRNAs in Tartary buckwheat seed development.


Assuntos
Fagopyrum/crescimento & desenvolvimento , Fagopyrum/genética , MicroRNAs/fisiologia , RNA Mensageiro/fisiologia , RNA de Plantas/fisiologia , Sementes/crescimento & desenvolvimento , Evolução Molecular , Perfilação da Expressão Gênica , Reação em Cadeia da Ligase , MicroRNAs/genética , Filogenia , Desenvolvimento Vegetal/genética , RNA de Plantas/genética , Reação em Cadeia da Polimerase em Tempo Real , Sementes/genética
12.
Genes (Basel) ; 12(2)2021 02 20.
Artigo em Inglês | MEDLINE | ID: mdl-33672655

RESUMO

Some C2H2 zinc-finger proteins (ZFP) transcription factors are involved in the development of pollen in plants. In grapevine (Vitis vinifera L.), it has been suggested that abnormalities in pollen development lead to the phenomenon called parthenocarpy that occurs in some varieties of this cultivar. At present, a network involving several transcription factors types has been revealed and key roles have been assigned to members of the C2H2 zinc-finger proteins (ZFP) family in model plants. However, particularities of the regulatory mechanisms controlling pollen formation in grapevine remain unknown. In order to gain insight into the participation of ZFPs in grapevine gametophyte development, we performed a genome-wide identification and characterization of genes encoding ZFP (VviZFP family). A total of 98 genes were identified and renamed based on the gene distribution into grapevine genome. The analysis performed indicate significant changes throughout VviZFP genes evolution explained by high heterogeneity in sequence, length, number of ZF and presence of another conserved domains. Moreover, segmental duplication participated in the gene family expansion in grapevine. The VviZFPs were classified based on domain and phylogenetic analysis into three sets and different groups. Heat-map demonstrated differential and tissue-specific expression patterns of these genes and k-means clustering allowed to identify a group of putative orthologs to some ZFPs related to pollen development. In transgenic plants carrying the promVviZFP13::GUS and promVviZFP68::GUS constructs, GUS signals were detectable in the anther and mature pollen grains. Expression profiling of selected VviZFP genes showed differential expression pattern during flower development and provides a basis for deepening in the understanding of VviZFPs role on grapevine reproductive development.


Assuntos
Dedos de Zinco CYS2-HIS2/genética , Regulação da Expressão Gênica de Plantas , Família Multigênica , Desenvolvimento Vegetal/genética , Pólen/genética , Vitis/fisiologia , Sequência de Aminoácidos , Sequência Conservada , Modelos Moleculares , Filogenia , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Conformação Proteica , Relação Estrutura-Atividade , Fatores de Transcrição/genética , Fatores de Transcrição/metabolismo , Vitis/classificação
13.
Int J Mol Sci ; 22(4)2021 Feb 07.
Artigo em Inglês | MEDLINE | ID: mdl-33562315

RESUMO

Plasma membrane intrinsic proteins (PIPs) transport water, CO2 and small neutral solutes across the plasma membranes. In this study, we used the clustered regularly interspaced short palindromic repeats (CRISPR) and CRISPR-associated protein 9 system (CRISPR/Cas9) to mutate PIP1;4 and PIP1;5 in a pip1;1,2,3 triple mutant to generate a pip1;1,2,3,4,5 (pip1s-) quintuple mutant. Compared to the wild-type (WT) plant, the pip1s- mutants had smaller sized rosette leaves and flowers, less rosette leaf number, more undeveloped siliques, shorter silique and less seeds. The pollen germination rate of the pip1s- mutant was significantly lower than that of the WT and the outer wall of the pip1s- mutant's pollen was deformed. The transcriptomic analysis showed significant alterations in the expression of many key genes and transcription factors (TFs) in the pip1s- mutant which involved in the development of leaf, flower and pollen, suggesting that the mutant of PIP1s not only directly affects hydraulics and carbon fixation, but also regulates the expression of related genes to affect plant growth and development.


Assuntos
Proteínas de Arabidopsis/metabolismo , Arabidopsis/crescimento & desenvolvimento , Flores/crescimento & desenvolvimento , Germinação , Proteínas de Membrana/metabolismo , Desenvolvimento Vegetal/genética , Pólen/crescimento & desenvolvimento , Arabidopsis/genética , Arabidopsis/metabolismo , Proteínas de Arabidopsis/genética , Flores/genética , Flores/metabolismo , Regulação da Expressão Gênica de Plantas , Proteínas de Membrana/genética , Pólen/genética , Pólen/metabolismo
14.
Genes (Basel) ; 12(2)2021 01 22.
Artigo em Inglês | MEDLINE | ID: mdl-33499195

RESUMO

Cell wall integrity control in plants involves multiple signaling modules that are mostly defined by genetic interactions. The putative co-receptors FEI1 and FEI2 and the extracellular glycoprotein FLA4 present the core components of a signaling pathway that acts in response to environmental conditions and insults to cell wall structure to modulate the balance of various growth regulators and, ultimately, to regulate the performance of the primary cell wall. Although the previously established genetic interactions are presently not matched by intermolecular binding studies, numerous receptor-like molecules that were identified in genome-wide interaction studies potentially contribute to the signaling machinery around the FLA4-FEI core. Apart from its function throughout the model plant Arabidopsis thaliana for the homeostasis of growth and stress responses, the FLA4-FEI pathway might support important agronomic traits in crop plants.


Assuntos
Moléculas de Adesão Celular/metabolismo , Parede Celular/metabolismo , Células Vegetais/fisiologia , Proteínas de Plantas/metabolismo , Proteínas Serina-Treonina Quinases/metabolismo , Transdução de Sinais , Moléculas de Adesão Celular/genética , Parede Celular/ultraestrutura , Celulose/metabolismo , Perfilação da Expressão Gênica , Regulação da Expressão Gênica de Plantas , Pectinas/metabolismo , Desenvolvimento Vegetal/genética , Proteínas de Plantas/genética , Raízes de Plantas/genética , Raízes de Plantas/metabolismo , Ligação Proteica , Proteínas Serina-Treonina Quinases/genética
15.
Int J Mol Sci ; 22(3)2021 Jan 21.
Artigo em Inglês | MEDLINE | ID: mdl-33494188

RESUMO

Transcription factors (TFs) and their complex interplay are essential for directing specific genetic programs, such as responses to environmental stresses, tissue development, or cell differentiation by regulating gene expression. Knowledge regarding TF-TF cooperations could be promising in gaining insight into the developmental switches between the cultivars of Brassica napus L., namely Zhongshuang11 (ZS11), a double-low accession with high-oil- content, and Zhongyou821 (ZY821), a double-high accession with low-oil-content. In this regard, we analysed a time series RNA-seq data set of seed tissue from both of the cultivars by mainly focusing on the monotonically expressed genes (MEGs). The consideration of the MEGs enables the capturing of multi-stage progression processes that are orchestrated by the cooperative TFs and, thus, facilitates the understanding of the molecular mechanisms determining seed oil content. Our findings show that TF families, such as NAC, MYB, DOF, GATA, and HD-ZIP are highly involved in the seed developmental process. Particularly, their preferential partner choices as well as changes in their gene expression profiles seem to be strongly associated with the differentiation of the oil content between the two cultivars. These findings are essential in enhancing our understanding of the genetic programs in both cultivars and developing novel hypotheses for further experimental studies.


Assuntos
Brassica napus/metabolismo , Óleos de Plantas/metabolismo , Sementes/metabolismo , Fatores de Transcrição/metabolismo , Brassica napus/genética , Perfilação da Expressão Gênica , Regulação da Expressão Gênica de Plantas , Redes Reguladoras de Genes , Mobilização Lipídica , Família Multigênica , Desenvolvimento Vegetal/genética , Sementes/genética , Fatores de Transcrição/genética , Transcriptoma
16.
Plant Mol Biol ; 105(1-2): 1-10, 2021 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-32930929

RESUMO

KEY MESSAGE: The developmental stage of anther development is generally more sensitive to abiotic stress than other stages of growth. Specific ROS levels, plant hormones and carbohydrate metabolism are disturbed in anthers subjected to abiotic stresses. As sessile organisms, plants are often challenged to multiple extreme abiotic stresses, such as drought, heat, cold, salinity and metal stresses in the field, which reduce plant growth, productivity and yield. The development of reproductive stage is more susceptible to abiotic stresses than the vegetative stage. Anther, the male reproductive organ that generate pollen grains, is more sensitive to abiotic stresses than female organs. Abiotic stresses affect all the processes of anther development, including tapetum development and degradation, microsporogenesis and pollen development, anther dehiscence, and filament elongation. In addition, abiotic stresses significantly interrupt phytohormone, lipid and carbohydrate metabolism, alter reactive oxygen species (ROS) homeostasis in anthers, which are strongly responsible for the loss of pollen fertility. At present, the precise molecular mechanisms of anther development under adverse abiotic stresses are still not fully understood. Therefore, more emphasis should be given to understand molecular control of anther development during abiotic stresses to engineer crops with better crop yield.


Assuntos
Flores/crescimento & desenvolvimento , Desenvolvimento Vegetal/fisiologia , Estresse Fisiológico/fisiologia , Resposta ao Choque Frio/fisiologia , Produtos Agrícolas , Secas , Fertilidade , Flores/genética , Flores/metabolismo , Regulação da Expressão Gênica de Plantas , Resposta ao Choque Térmico/fisiologia , Desenvolvimento Vegetal/genética , Reguladores de Crescimento de Plantas/metabolismo , Pólen/crescimento & desenvolvimento , Espécies Reativas de Oxigênio/metabolismo , Reprodução , Estresse Salino/fisiologia
17.
Biotechnol Lett ; 43(2): 511-521, 2021 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-33131007

RESUMO

OBJECTIVES: Calcium-dependent protein kinases (CDPKs) function directly in plant development and stress responses. We used whole genome sequences and mRNA expression data to analyze the phylogenetic relationships, gene structure, collinearity, and differential expression of CDPKs in two differentially drought-tolerant potato varieties. RESULTS: In total, we identified 25 CDPK proteins belonging to four subfamilies. There was a significant collinear relationship among 13 CDPK genes belonging to four segmentally duplicated pairs. Subcellular prediction implied that all StCDPKs were localized at the plasma membrane. Analysis of promoter regions revealed that StCDPKs were photosensitive and responsive to biotic stress, abiotic stress, and hormone stimuli. RNA-seq analysis showed differential expression of StCDPKs among various potato tissues, and qPCR analysis revealed that 20 StCDPKs exhibited differential expression patterns under drought stress between drought-tolerant (QS9) and drought sensitive (Atl) potato varieties. Among these, the most strongly drought-induced genes were respectively StCDPK3 and StCDPK23, highlighting these as attractive candidate genes for further functional analyses of drought-stress responses in potato. CONCLUSIONS: Our results demonstrating the tissue specific and drought stress-responsive StCDPK genes of potato both provide a reference for further research about the functions of CDPK family proteins and should support ongoing efforts for the further genetic improvement of potato.


Assuntos
Proteínas de Ligação ao Cálcio/genética , Filogenia , Proteínas Quinases/genética , Solanum tuberosum/genética , Secas , Regulação da Expressão Gênica de Plantas/genética , Genoma de Planta/genética , Desenvolvimento Vegetal/genética , Proteínas de Plantas/genética , Solanum tuberosum/crescimento & desenvolvimento , Estresse Fisiológico/genética
18.
Int J Mol Sci ; 21(20)2020 Oct 11.
Artigo em Inglês | MEDLINE | ID: mdl-33050591

RESUMO

Autotetraploid rice is a useful rice germplasm for polyploid rice breeding. However, low fertility limits its commercial production. A neo-tetraploid rice with high fertility was developed from the progenies of crossing between autotetraploid lines by our research group. Our previous study showed that a myeloblastosis (MYB) transcription factor, MOF1, might be associated with the pollen development in tetraploid rice. However, little information is available about its role in pollen development in tetraploid rice. Here, we identified a new haplotype of MOF1 from neo-tetraploid rice and marked it as MOF1a. Transcriptome and qRT-PCR analysis demonstrated that MOF1a highly expressed in anthers, and displayed differential expression in neo-tetraploid rice compared to tetraploid rice line with low pollen fertility. The mutant (mof1a) of MOF1a, which was generated by CRISPR/Cas9 knockout in neo-tetraploid rice, showed low pollen fertility, and also exhibited abnormal tapetum and middle layer development, and defective chromosome behaviors during meiosis. A total of 13 tapetal related genes were found to be up-regulated in meiotic anthers of MOF1a compared with wild type plants by RNA-seq analysis, including CYP703A3, PTC1, and OsABCG26, which had been demonstrated to affect tapetal development. Moreover, 335 meiosis-related genes displayed differential expression patterns at same stage, including nine important meiosis-related genes, such as metallothionein OsMT1a. These results demonstrated that MOF1a plays an important role in pollen development and provides a foundation for understanding the molecular mechanism underlying MOF1a in reproduction of tetraploid rice.


Assuntos
Edição de Genes , Regulação da Expressão Gênica de Plantas , Meiose/genética , Oryza/fisiologia , Desenvolvimento Vegetal/genética , Transcriptoma , Biomarcadores , Sistemas CRISPR-Cas , Cromossomos de Plantas , Fertilidade , Perfilação da Expressão Gênica , Imuno-Histoquímica , Pólen , Tetraploidia
19.
Int J Biol Macromol ; 164: 4032-4045, 2020 Dec 01.
Artigo em Inglês | MEDLINE | ID: mdl-32896558

RESUMO

Flavonoids can not only help plants resist ultraviolet and pathogen attacks, but also show a wide range of therapeutic prospects for human health, including antioxidant, anti-inflammatory and anti-hypertension. Tartary buckwheat, as medicinal and food homologous crop, is rich in flavonoids, among which rutin may prevent liver damage. The one of the major objectives of Tartary buckwheat breeding is to cultivate varieties that have large fruits, high flavonoids and nutrient contents. Members of the cytochrome P450 monooxygenase (CYP) superfamily play a vital role in the synthesis of flavonoids, plant growth and development. Whole-genome analyses of the CYP family have been performed in several plants, but the CYP family has not been characterized in Tartary buckwheat. In this study, 285 FtCYPs were identified from the genome to improve the rutin content and quality of Tartary buckwheat. By exploring the structure, motif composition, tandem and segmental duplication events of FtCYPs, as well as evolutionary relationships with CYPs in other plants, we preliminarily screened potential FtCYPs regulating rutin synthesis, growth and development. The expression levels of the FtCYPs in different organs and fruits at various periods were measured. This study provides a solid foundation for verifying the function of FtCYPs, cultivating high rutin Tartary buckwheat varieties.


Assuntos
Vias Biossintéticas , Sistema Enzimático do Citocromo P-450/genética , Fagopyrum/genética , Fagopyrum/metabolismo , Família Multigênica , Rutina/biossíntese , Motivos de Aminoácidos , Mapeamento Cromossômico , Produção Agrícola , Sistema Enzimático do Citocromo P-450/química , Sistema Enzimático do Citocromo P-450/metabolismo , Evolução Molecular , Fagopyrum/classificação , Regulação da Expressão Gênica de Plantas , Estudo de Associação Genômica Ampla , Especificidade de Órgãos , Filogenia , Desenvolvimento Vegetal/genética
20.
Nat Plants ; 6(4): 360-367, 2020 04.
Artigo em Inglês | MEDLINE | ID: mdl-32231254

RESUMO

Temperature-sensitive genic male sterility (TGMS) lines are widely used in the breeding of hybrid crops1,2, but by what means temperature as a general environmental factor reverses the fertility of different TGMS lines remains unknown. Here, we identified an Arabidopsis TGMS line named reversible male sterile (rvms) that is fertile at low temperature (17 °C) and encodes a GDSL lipase. Cytological observations and statistical analysis showed that low temperature slows pollen development. Further screening of restorers of rvms, as well as crossing with a slow-growth line at normal temperature (24 °C), demonstrate that slowing of development overcomes the defects of rvms microspores and allows them to develop into functional pollen. Several other Arabidopsis TGMS lines were identified, and their fertility was also restored by slowing of development. Given that male reproductive development is conserved3, we propose that slowing of development is a general mechanism applicable to the sterility-fertility conversion of TGMS lines from different plant species.


Assuntos
Arabidopsis/fisiologia , Termotolerância , Arabidopsis/genética , Arabidopsis/crescimento & desenvolvimento , Arabidopsis/ultraestrutura , Temperatura Baixa , Fertilidade/genética , Perfilação da Expressão Gênica , Interação Gene-Ambiente , Genes de Plantas , Mutação , Desenvolvimento Vegetal/genética , Desenvolvimento Vegetal/fisiologia , Pólen/genética , Pólen/crescimento & desenvolvimento , Termotolerância/genética
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