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1.
Biomolecules ; 14(2)2024 Feb 19.
Artigo em Inglês | MEDLINE | ID: mdl-38397478

RESUMO

The serine peptidase CLPP is conserved among bacteria, chloroplasts, and mitochondria. In humans and mice, its loss causes Perrault syndrome, which presents with growth deficits, infertility, deafness, and ataxia. In the filamentous fungus Podospora anserina, CLPP loss leads to longevity. CLPP substrates are selected by CLPX, an AAA+ unfoldase. CLPX is known to target delta-aminolevulinic acid synthase (ALAS) to promote pyridoxal phosphate (PLP) binding. CLPX may also influence cofactor association with other enzymes. Here, the evaluation of P. anserina metabolomics highlighted a reduction in arginine/histidine levels. In Mus musculus cerebellum, reductions in arginine/histidine and citrulline occurred with a concomitant accumulation of the heme precursor protoporphyrin IX. This suggests that the increased biosynthesis of 5-carbon (C5) chain deltaALA consumes not only C4 succinyl-CoA and C1 glycine but also specific C5 delta amino acids. As enzymes responsible for these effects, the elevated abundance of CLPX and ALAS is paralleled by increased OAT (PLP-dependent, ornithine delta-aminotransferase) levels. Possibly as a consequence of altered C1 metabolism, the proteome profiles of P. anserina CLPP-null cells showed strong accumulation of a methyltransferase and two mitoribosomal large subunit factors. The reduced histidine levels may explain the previously observed metal interaction problems. As the main nitrogen-storing metabolite, a deficiency in arginine would affect the urea cycle and polyamine synthesis. Supplementation of arginine and histidine might rescue the growth deficits of CLPP-mutant patients.


Assuntos
Avena , Eucariotos , Animais , Camundongos , Arginina , Avena/metabolismo , Endopeptidase Clp/genética , Endopeptidase Clp/metabolismo , Eucariotos/metabolismo , Heme/metabolismo , Histidina , Transportadores de Ânions Orgânicos
2.
Int J Mol Sci ; 24(21)2023 Oct 28.
Artigo em Inglês | MEDLINE | ID: mdl-37958678

RESUMO

Biological membranes, primarily composed of lipids, envelop each living cell. The intricate composition and organization of membrane lipids, including the variety of fatty acids they encompass, serve a dynamic role in sustaining cellular structural integrity and functionality. Typically, modifications in lipid composition coincide with consequential alterations in universally significant signaling pathways. Exploring the various fatty acids, which serve as the foundational building blocks of membrane lipids, provides crucial insights into the underlying mechanisms governing a myriad of cellular processes, such as membrane fluidity, protein trafficking, signal transduction, intercellular communication, and the etiology of certain metabolic disorders. Furthermore, comprehending how alterations in the lipid composition, especially concerning the fatty acid profile, either contribute to or prevent the onset of pathological conditions stands as a compelling area of research. Hence, this review aims to meticulously introduce the intricacies of membrane lipids and their constituent fatty acids in a healthy organism, thereby illuminating their remarkable diversity and profound influence on cellular function. Furthermore, this review aspires to highlight some potential therapeutic targets for various pathological conditions that may be ameliorated through dietary fatty acid supplements. The initial section of this review expounds on the eukaryotic biomembranes and their complex lipids. Subsequent sections provide insights into the synthesis, membrane incorporation, and distribution of fatty acids across various fractions of membrane lipids. The last section highlights the functional significance of membrane-associated fatty acids and their innate capacity to shape the various cellular physiological responses.


Assuntos
Ácidos Graxos , Lipídeos de Membrana , Ácidos Graxos/metabolismo , Lipídeos de Membrana/metabolismo , Membrana Celular/metabolismo , Fluidez de Membrana , Eucariotos/metabolismo , Fosfolipídeos/metabolismo
3.
BMC Genomics ; 21(1): 699, 2020 Oct 07.
Artigo em Inglês | MEDLINE | ID: mdl-33028229

RESUMO

BACKGROUND: Selenium is an essential trace element, and selenocysteine (Sec, U) is its predominant form in vivo. Proteins that contain Sec are selenoproteins, whose special structural features include not only the TGA codon encoding Sec but also the SECIS element in mRNA and the conservation of the Sec-flanking region. These unique features have led to the development of a series of bioinformatics methods to predict and research selenoprotein genes. There have been some studies and reports on the evolution and distribution of selenoprotein genes in prokaryotes and multicellular eukaryotes, but the systematic analysis of single-cell eukaryotes, especially algae, has been very limited. RESULTS: In this study, we predicted selenoprotein genes in 137 species of algae by using a program we previously developed. More than 1000 selenoprotein genes were obtained. A database website was built to record these algae selenoprotein genes ( www.selenoprotein.com ). These genes belong to 42 selenoprotein families, including three novel selenoprotein gene families. CONCLUSIONS: This study reveals the primordial state of the eukaryotic selenoproteome. It is an important clue to explore the significance of selenium for primordial eukaryotes and to determine the complete evolutionary spectrum of selenoproteins in all life forms.


Assuntos
Eucariotos , Selênio , Selenoproteínas , Códon de Terminação , Eucariotos/genética , Eucariotos/metabolismo , Evolução Molecular , Proteoma , Selenocisteína , Selenoproteínas/genética , Selenoproteínas/metabolismo
4.
Semin Cell Dev Biol ; 108: 82-93, 2020 12.
Artigo em Inglês | MEDLINE | ID: mdl-32147380

RESUMO

Plant oils represent an energy-rich and carbon-dense group of hydrophobic compounds. These oils are not only of economic interest, but also play important, fundamental roles in plant and algal growth and development. The subcellular storage compartments of plant lipids, referred to as lipid droplets (LDs), have long been considered relatively inert oil vessels. However, research in the last decade has revealed that LDs play far more dynamic roles in plant biology than previously appreciated, including transient neutral lipid storage, membrane remodeling, lipid signaling, and stress responses. Here we discuss recent developments in the understanding of LD formation, turnover and function in land plants and algae.


Assuntos
Eucariotos/metabolismo , Gotículas Lipídicas/metabolismo , Plantas/metabolismo , Modelos Biológicos , Especificidade da Espécie , Triglicerídeos/metabolismo
5.
Yeast ; 36(11): 649-656, 2019 11.
Artigo em Inglês | MEDLINE | ID: mdl-31334866

RESUMO

Exploring new drug candidates or drug targets against many illnesses is necessary as "traditional" treatments lose their effectivity. Cancer and sicknesses caused by protozoan parasites are among these diseases. Cell purine metabolism is an important drug target. Theoretically, inhibiting purine metabolism could stop the proliferation of unwanted cells. Purine metabolism is similar across all eukaryotes. However, some medically important organisms or cell lines rely on their host purine metabolism. Protozoans causing malaria, leishmaniasis, or toxoplasmosis are purine auxotrophs. Some cancer forms have also lost the ability to synthesize purines de novo. Budding yeast can serve as an effective model for eukaryotic purine metabolism, and thus, purine auxotrophic strains could be an important tool. In this review, we present the common principles of purine metabolism in eukaryotes, effects of purine starvation in eukaryotic cells, and purine-starved Saccharomyces cerevisiae as a model for purine depletion-elicited metabolic states with applications in evolution studies and pharmacology. Purine auxotrophic yeast strains behave differently when growing in media with sufficient supplementation with adenine or in media depleted of adenine (starvation). In the latter, they undergo cell cycle arrest at G1/G0 and become stress resistant. Importantly, similar effects have also been observed among parasitic protozoans or cancer cells. We consider that studies on metabolic changes caused by purine auxotrophy could reveal new options for parasite or cancer therapy. Further, knowledge on phenotypic changes will improve the use of auxotrophic strains in high-throughput screening for primary drug candidates.


Assuntos
Desenvolvimento de Medicamentos , Eucariotos/metabolismo , Purinas/metabolismo , Saccharomyces cerevisiae/crescimento & desenvolvimento , Saccharomyces cerevisiae/metabolismo , Adenina/farmacologia , Pontos de Checagem do Ciclo Celular , Humanos , Neoplasias/fisiopatologia , Saccharomyces cerevisiae/genética
6.
Curr Opin Struct Biol ; 58: 26-33, 2019 10.
Artigo em Inglês | MEDLINE | ID: mdl-31176065

RESUMO

Copper plays a vital role in fundamental cellular functions, and its concentration in the cell must be tightly regulated, as dysfunction of copper homeostasis is linked to severe neurological diseases and cancer. This review provides a compendium of current knowledge regarding the mechanism of copper transfer from the blood system to the Golgi apparatus; this mechanism involves the copper transporter hCtr1, the metallochaperone Atox1, and the ATPases ATP7A/B. We discuss key insights regarding the structural and functional properties of the hCtr1-Atox1-ATP7B cycle, obtained from diverse studies relying on distinct yet complementary biophysical, biochemical, and computational methods. We further address the mechanistic aspects of the cycle that continue to remain elusive. These knowledge gaps must be filled in order to be able to harness our understanding of copper transfer to develop therapeutic approaches with the capacity to modulate copper metabolism.


Assuntos
Biologia Computacional/métodos , Cobre/metabolismo , Eucariotos/metabolismo , Sequência de Aminoácidos , Transporte Biológico , Proteínas de Transporte de Cobre/química , Proteínas de Transporte de Cobre/metabolismo , Humanos
7.
Bioinformatics ; 34(12): 1981-1985, 2018 06 15.
Artigo em Inglês | MEDLINE | ID: mdl-29390068

RESUMO

Summary: Cysteine and histidine rich domains (CHORDs), implicated in immunity and disease resistance signaling in plants, and in development and signal transduction in muscles and tumorigenesis in animals, are seen to have a cylindrical three-dimensional structure stabilized by the tetrahedral chelation of two zinc ions. CHORDs are regarded as novel zinc-binding domains and classified independently in Pfam and ECOD. Our sequence and structure analysis reveals that both the zinc-binding sites in CHORD possess a zinc ribbon fold and are likely related to each other by duplication and circular permutation. Interestingly, we also detect an evolutionary relationship between each of the CHORD zinc fingers (ZFs) and the Bruton's tyrosine kinase (Btk)-type ZF of the zinc ribbon fold group. Btk_ZF is found in eukaryotic Tec kinase family proteins that are also implicated in signaling pathways in several lineages of hematopoietic cells involved in mammalian immunity. Our analysis suggests that the unique zinc-stabilized fold seen only in the CHORD and Btk_ZFs likely emerged specifically in eukaryotes to mediate diverse signaling pathways. Supplementary information: Supplementary data are available at Bioinformatics online.


Assuntos
Evolução Molecular , Metaloproteínas/genética , Elementos Estruturais de Proteínas/genética , Zinco/química , Tirosina Quinase da Agamaglobulinemia/química , Tirosina Quinase da Agamaglobulinemia/metabolismo , Sequência de Aminoácidos , Animais , Sítios de Ligação , Cisteína , Eucariotos/genética , Eucariotos/metabolismo , Histidina , Humanos , Metaloproteínas/química , Metaloproteínas/metabolismo , Proteínas Tirosina Quinases/química , Proteínas Tirosina Quinases/metabolismo , Alinhamento de Sequência , Transdução de Sinais , Zinco/metabolismo , Dedos de Zinco/genética
8.
Metallomics ; 10(3): 370-377, 2018 03 01.
Artigo em Inglês | MEDLINE | ID: mdl-29484341

RESUMO

Eukaryotic cells, whether free-living or organismal, rely on metallo-reductases to process environmental ferric iron and cupric copper prior to uptake. In addition, some free-living eukaryotes (e.g. fungi and algae) couple ferri-reduction to ferro-oxidation, a process catalyzed by a small cohort of multi-copper oxidases; in these organisms, the ferric iron product is a ligand for cell iron uptake via a ferric iron permease. In addition to their support of iron uptake in lower eukaryotes, ferroxidases support ferrous iron efflux in Chordata; in this process the release of the ferrous iron from the efflux transporter is catalyzed by its ferroxidation. Last, ferroxidases also catalyze the oxidation of cuprous copper and, as metallo-oxidases, mirror the dual activity of the metallo-reductases. This Perspective examines the teleos of the yin-yang of this redox cycling of iron and copper in their metabolism.


Assuntos
Ceruloplasmina/metabolismo , Cobre/metabolismo , Eucariotos/metabolismo , Ferro/metabolismo , Transporte Biológico , Cobre/química , Ferro/química , Oxirredução
9.
J Biosci Bioeng ; 125(6): 669-675, 2018 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-29370982

RESUMO

In this study, the effect of abiotic stress on the acidophilic eukaryotic microalga, Coccomyxa onubensis, was analyzed for the production of lutein and PUFAs (polyunsaturated fatty acids). It grows autotrophically at a pH of 2.5. It showed a growth rate of 0.30 d-1, and produced approximately 122.50 mg·L-1·d-1 biomass, containing lipids (300.39 mg g-1dw), lutein (5.30 mg g-1dw), and ß-carotene (1.20 mg g-1dw). The fatty acid methyl ester (FAME) fraction was 89.70 mg g-1dw with abundant palmitic acid (28.70%) and linoleic acid (37.80%). The addition of 100 mM NaCl improved the growth rate (0.54 d-1), biomass productivity (243.75 mg·L-1·d-1), and lipids accumulation (416.16 mg g-1dw). The microalga showed a lutein content of 6.70 mg g-1dw and FAME fraction of 118.90 mg g-1dw; 68% of the FAMEs were PUFAs. However, when 200-500 mM salt was added, its growth was inhibited but there was a significant induction of lutein (up to 7.80 mg g-1dw). Under continuous illumination with PAR (photosynthetically active radiations) +UVA (ultraviolet A, 8.7 W m-2), C. onubensis showed a growth rate of 0.40 d-1, and produced 226.3 mg·L-1·d-1 biomass, containing lipids, (487.26 mg g-1dw), lutein (7.07 mg g-1dw), and FAMEs (232.9 mg g-1dw); 48.4% of the FAME were PUFAs. The illumination with PAR + UVB (ultraviolet B, 0.16 W m-2) was toxic for cells. These results indicate that C. onubensis biomass is suitable as a supplement for functional foods and/or source of high added value products.


Assuntos
Clorófitas , Ácidos Graxos Insaturados/metabolismo , Luteína/metabolismo , Cloreto de Sódio/farmacologia , Estresse Fisiológico , Raios Ultravioleta , Aclimatação/efeitos dos fármacos , Aclimatação/efeitos da radiação , Ácidos/metabolismo , Biomassa , Clorófitas/efeitos dos fármacos , Clorófitas/crescimento & desenvolvimento , Clorófitas/metabolismo , Clorófitas/efeitos da radiação , Eucariotos/efeitos dos fármacos , Eucariotos/metabolismo , Eucariotos/efeitos da radiação , Redes e Vias Metabólicas/efeitos dos fármacos , Redes e Vias Metabólicas/efeitos da radiação , Microalgas/efeitos dos fármacos , Microalgas/crescimento & desenvolvimento , Microalgas/metabolismo , Microalgas/efeitos da radiação , Estresse Fisiológico/efeitos dos fármacos , Estresse Fisiológico/efeitos da radiação , Raios Ultravioleta/efeitos adversos , beta Caroteno/metabolismo
10.
BMC Plant Biol ; 17(1): 221, 2017 Nov 25.
Artigo em Inglês | MEDLINE | ID: mdl-29178846

RESUMO

BACKGROUND: The preparation of functional thylakoid membranes from diatoms with a silica cell wall is still a largely unsolved challenge. Therefore, an optimized protocol for the isolation of oxygen evolving thylakoid membranes of the centric diatom Cyclotella meneghiniana has been developed. The buffer used for the disruption of the cells was supplemented with polyethylene glycol based on its stabilizing effect on plastidic membranes. Disruption of the silica cell walls was performed in a French Pressure cell and subsequent linear sorbitol density gradient centrifugation was used to isolate the thylakoid membrane fraction. RESULTS: Spectroscopic characterization of the thylakoids by absorption and 77 K fluorescence spectroscopy showed that the photosynthetic pigment protein complexes in the isolated thylakoid membranes were intact. This was supported by oxygen evolution measurements which demonstrated high electron transport rates in the presence of the artificial electron acceptor DCQB. High photosynthetic activity of photosystem II was corroborated by the results of fast fluorescence induction measurements. In addition to PSII and linear electron transport, indications for a chlororespiratory electron transport were observed in the isolated thylakoid membranes. Photosynthetic electron transport also resulted in the establishment of a proton gradient as evidenced by the quenching of 9-amino-acridine fluorescence. Because of their ability to build-up a light-driven proton gradient, de-epoxidation of diadinoxanthin to diatoxanthin and diatoxanthin-dependent non-photochemical quenching of chlorophyll fluorescence could be observed for the first time in isolated thylakoid membranes of diatoms. However, the ∆pH, diadinoxanthin de-epoxidation and diatoxanthin-dependent NPQ were weak compared to intact diatom cells or isolated thylakoids of higher plants. CONCLUSIONS: The present protocol resulted in thylakoids with a high electron transport capacity. These thylakoids can thus be used for experiments addressing various aspects of the photosynthetic electron transport by, e.g., employing artificial electron donors and acceptors which do not penetrate the diatom cell wall. In addition, the present isolation protocol yields diatom thylakoids with the potential for xanthophyll cycle and non-photochemical quenching measurements. However, the preparation has to be further refined before these important topics can be addressed systematically.


Assuntos
Fracionamento Celular/métodos , Diatomáceas/metabolismo , Transporte de Elétrons , Eucariotos/metabolismo , Tilacoides , Diatomáceas/citologia , Eucariotos/citologia , Oxigênio/metabolismo , Fotossíntese , Complexo de Proteína do Fotossistema II/metabolismo , Espectrometria de Fluorescência , Tilacoides/metabolismo , Xantofilas/metabolismo
11.
Nature ; 548(7669): 578-581, 2017 08 31.
Artigo em Inglês | MEDLINE | ID: mdl-28813409

RESUMO

The transition from dominant bacterial to eukaryotic marine primary productivity was one of the most profound ecological revolutions in the Earth's history, reorganizing the distribution of carbon and nutrients in the water column and increasing energy flow to higher trophic levels. But the causes and geological timing of this transition, as well as possible links with rising atmospheric oxygen levels and the evolution of animals, remain obscure. Here we present a molecular fossil record of eukaryotic steroids demonstrating that bacteria were the only notable primary producers in the oceans before the Cryogenian period (720-635 million years ago). Increasing steroid diversity and abundance marks the rapid rise of marine planktonic algae (Archaeplastida) in the narrow time interval between the Sturtian and Marinoan 'snowball Earth' glaciations, 659-645 million years ago. We propose that the incumbency of cyanobacteria was broken by a surge of nutrients supplied by the Sturtian deglaciation. The 'Rise of Algae' created food webs with more efficient nutrient and energy transfers, driving ecosystems towards larger and increasingly complex organisms. This effect is recorded by the concomitant appearance of biomarkers for sponges and predatory rhizarians, and the subsequent radiation of eumetazoans in the Ediacaran period.


Assuntos
Eucariotos/metabolismo , Fósseis , Animais , Biomarcadores/análise , Ciclo do Carbono , Cianobactérias/isolamento & purificação , Cianobactérias/metabolismo , Eucariotos/isolamento & purificação , Cadeia Alimentar , História Antiga , Camada de Gelo , Oceanos e Mares , Fósforo/metabolismo
12.
Environ Microbiol ; 19(4): 1568-1583, 2017 04.
Artigo em Inglês | MEDLINE | ID: mdl-28139885

RESUMO

In the North Atlantic Ocean, we found that natural populations of Prochlorococcus adhered to Redfield ratio dimensions when comparing cell quotas of carbon to nitrogen, but had flexible composition under nutrient and light stress, allowing for a broad range of cellular carbon- and nitrogen-to-phosphorus ratios. Synechococcus populations also exhibited a wide range of elemental stoichiometry, including carbon-to-nitrogen ratios and increased their carbon-to-phosphorus ratios in response to low dissolved phosphorus availability. Small eukaryotic populations tended to have lower carbon-to-phosphorus ratios than single cell cyanobacterial groups, with the exception of one group of samples, which highlights the importance of community composition when determining how biological diversity influences bulk particle stoichiometry. The ratio of dissolved nitrogen:phosphorus fluxes into the euphotic zone was not correlated to nitrogen:phosphorus cellular quotas. The lack of a homeostatic relationship implies that other mechanisms, such as species-specific adaptation to oligotrophic phosphorus concentrations, control elemental particle ratios.


Assuntos
Prochlorococcus/metabolismo , Synechococcus/metabolismo , Microbiologia da Água , Oceano Atlântico , Carbono/metabolismo , Eucariotos/metabolismo , Nitrogênio/metabolismo , Fósforo/metabolismo , Água do Mar/microbiologia
13.
New Phytol ; 213(2): 700-713, 2017 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-27605045

RESUMO

The response of marine microalgal lipids to phosphorus is of central importance in phytoplankton ecology but remains poorly understood. We determined how taxonomically diverse microalgal species remodelled their lipid class profile in response to phosphorus availability and whether these changes coincided with those already known to occur in land plants and in the limited number of phytoplankton species for which data are available. The complete lipid class profile and specific lipid ratios influenced by phosphorus availability were quantified in two green microalgae and seven Chromalveolates exposed to phosphorus repletion, deprivation and replenishment. Lipid class cell quota changes in the two green microalgae resembled the currently described pattern of betaine lipids substituting for phospholipids under phosphorus depletion, whereas only two of the studied Chromalveolates showed this pattern. Sulpholipids counterbalanced phosphatidylglycerol only in Picochlorum atomus. In all other species, both lipids decreased simultaneously under phosphorus deprivation, although sulpholipids declined more slowly. Phosphorus deprivation always induced a decrease in digalactosyl-diacylglycerol. However, the ratio of digalactosyl-diacylglycerol to total phospholipids increased in eight species and remained unchanged in Isochrysis galbana. Marine phytoplankton seems to have evolved a diversified mechanism for remodelling its lipid class profile under the influence of phosphorus, with cryptophytes and particularly haptophytes exhibiting previously unobserved lipid responses to phosphorus.


Assuntos
Organismos Aquáticos/metabolismo , Eucariotos/metabolismo , Lipídeos/química , Fósforo/metabolismo , Fitoplâncton/metabolismo , Análise de Variância , Organismos Aquáticos/efeitos dos fármacos , Eucariotos/efeitos dos fármacos , Microalgas/efeitos dos fármacos , Microalgas/crescimento & desenvolvimento , Microalgas/metabolismo , Fosfatos/farmacologia , Fitoplâncton/efeitos dos fármacos , Análise de Componente Principal , Especificidade da Espécie
14.
Sci Rep ; 6: 26450, 2016 05 23.
Artigo em Inglês | MEDLINE | ID: mdl-27211815

RESUMO

Cell-cycle regulatory protein, CDK2 is active when bound to its complementary partner protein, CyclinA or E. Recent discovery of the Kip/Cip family of proteins has indicated that the activity of CDK2 is also regulated by a member protein, p27. Although, the mechanism of CDK2 inhibition by p27 binding is known from crystal structure, little is known about the mechanism of CDK2 reactivation. Here, we execute classical and accelerated molecular dynamics simulations of unphosphorylated- and phosphorylated-p27 bound CDK2/CyclinA to unravel the CDK2 reactivation mechanism at molecular-to-atomic detail. Results suggest that the phosphorylation of p27 Y88 residue (pY88-p27) first disrupts the p27/CDK2 hybrid ß-sheet and subsequently ejects the p27 310 helix from CDK2 catalytic cleft. The unbinding of p27 from CDK2/CyclinA complex, thus, follows a two-step unfolding mechanism, where the 310 helix ejection constitutes the rate-limiting step. Interestingly, the unfolding of p27 leaves CDK2/CyclinA in an active state, where the prerequisite CDK2-CyclinA interfacial contacts were regained and ATP achieved its native position for smooth transfer of phosphate. Our findings match very well with NMR chemical shift data that indicated the flip-out of p27 310 helix from CDK2 pocket and kinetic experiments that exhibited significant kinase activity of CDK2 when saturated with pY88-p27.


Assuntos
Quinase 2 Dependente de Ciclina/metabolismo , Inibidor de Quinase Dependente de Ciclina p27/química , Inibidor de Quinase Dependente de Ciclina p27/metabolismo , Eucariotos/metabolismo , Animais , Domínio Catalítico , Ciclina A/metabolismo , Ativação Enzimática , Eucariotos/química , Humanos , Modelos Moleculares , Simulação de Dinâmica Molecular , Fosforilação , Estrutura Secundária de Proteína , Desdobramento de Proteína , Tirosina/química
15.
Genome Res ; 25(9): 1256-67, 2015 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-26194102

RESUMO

Selenoproteins are proteins that incorporate selenocysteine (Sec), a nonstandard amino acid encoded by UGA, normally a stop codon. Sec synthesis requires the enzyme Selenophosphate synthetase (SPS or SelD), conserved in all prokaryotic and eukaryotic genomes encoding selenoproteins. Here, we study the evolutionary history of SPS genes, providing a map of selenoprotein function spanning the whole tree of life. SPS is itself a selenoprotein in many species, although functionally equivalent homologs that replace the Sec site with cysteine (Cys) are common. Many metazoans, however, possess SPS genes with substitutions other than Sec or Cys (collectively referred to as SPS1). Using complementation assays in fly mutants, we show that these genes share a common function, which appears to be distinct from the synthesis of selenophosphate carried out by the Sec- and Cys- SPS genes (termed SPS2), and unrelated to Sec synthesis. We show here that SPS1 genes originated through a number of independent gene duplications from an ancestral metazoan selenoprotein SPS2 gene that most likely already carried the SPS1 function. Thus, in SPS genes, parallel duplications and subsequent convergent subfunctionalization have resulted in the segregation to different loci of functions initially carried by a single gene. This evolutionary history constitutes a remarkable example of emergence and evolution of gene function, which we have been able to trace thanks to the singular features of SPS genes, wherein the amino acid at a single site determines unequivocally protein function and is intertwined to the evolutionary fate of the entire selenoproteome.


Assuntos
Evolução Biológica , Fosfotransferases/genética , Fosfotransferases/metabolismo , Animais , Biomarcadores , Eucariotos/genética , Eucariotos/metabolismo , Duplicação Gênica , Humanos , Insetos , Filogenia , Células Procarióticas/metabolismo , Seleção Genética , Selênio/metabolismo , Selenoproteínas/genética , Selenoproteínas/metabolismo , Urocordados , Vertebrados
16.
Bioresour Technol ; 179: 187-192, 2015 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-25544496

RESUMO

The effect of algae growth on aerobic granulation and nutrients removal was studied in two identical sequencing batch reactors (SBRs). Sunlight exposure promoted the growth of algae in the SBR (Rs), forming an algal-bacterial symbiosis in aerobic granules. Compared to the control SBR (Rc), Rs had a slower granulation process with granules of loose structure and smaller particle size. Moreover, the specific oxygen uptake rate was significantly decreased for the granules from Rs with secretion of 25.7% and 22.5% less proteins and polysaccharides respectively in the extracellular polymeric substances. Although little impact was observed on chemical oxygen demand (COD) removal, algal-bacterial symbiosis deteriorated N and P removals, about 40.7-45.4% of total N and 44% of total P in Rs in contrast to 52.9-58.3% of TN and 90% of TP in Rc, respectively. In addition, the growth of algae altered the microbial community in Rs, especially unfavorable for Nitrospiraceae and Nitrosomonadaceae.


Assuntos
Técnicas de Cultura Celular por Lotes/instrumentação , Reatores Biológicos , Eucariotos/crescimento & desenvolvimento , Nitrogênio/isolamento & purificação , Fósforo/isolamento & purificação , Esgotos , Aerobiose , Bactérias/metabolismo , Biodegradação Ambiental , Biodiversidade , Análise da Demanda Biológica de Oxigênio , Biopolímeros/análise , Eucariotos/metabolismo , Espaço Extracelular/química , Oxigênio/metabolismo , Águas Residuárias
17.
Bioresour Technol ; 179: 234-242, 2015 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-25544498

RESUMO

The N/P ratio of wastewater can vary greatly and directly affect algal growth and nutrient removal process. Three benthic filamentous algae species Cladophora sp., Klebsormidium sp. and Pseudanabaena sp. were isolated from a periphyton bioreactor and cultured under laboratory conditions on varying N/P ratios to determine their ability to remove nitrate and phosphorus. The N/P ratio significantly influenced the algal growth and phosphorus uptake process. Appropriate N/P ratios for nitrogen and phosphorus removal were 5-15, 7-10 and 7-20 for Cladophora sp., Klebsormidium sp. and Pseudanabaena sp., respectively. Within these respective ranges, Cladophora sp. had the highest biomass production, while Pseudanabaena sp. had the highest nitrogen and phosphorus contents. This study indicated that Cladophora sp. had a high capacity of removing phosphorus from wastewaters of low N/P ratio, and Pseudanabaena sp. was highly suitable for removing nitrogen from wastewaters with high N/P ratio.


Assuntos
Ecossistema , Eucariotos/metabolismo , Nitrogênio/metabolismo , Fósforo/metabolismo , Biomassa , Eucariotos/efeitos dos fármacos , Eucariotos/crescimento & desenvolvimento , Cinética , Dados de Sequência Molecular , Nitrogênio/isolamento & purificação , Nitrogênio/farmacologia , Fósforo/isolamento & purificação , Fósforo/farmacologia , Fatores de Tempo
18.
Bioresour Technol ; 172: 143-149, 2014 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-25255191

RESUMO

Energy-intensive chemical conversion of crude algal oils into biodiesel is a major barrier for cost-effective algal biofuel production. To overcome this problem, we developed an enzyme-based platform for conversion of crude algal oils into fatty acid methyl esters. Crude algal oils were extracted from the oleaginous microalga Nannochloropsis oceanica IMET1 and converted by an immobilized lipase from Candida antarctica. The effects of different acyl acceptors, t-butanol as a co-solvent, oil to t-butanol ratio, oil to methanol ratio, temperature and reaction time on biodiesel conversion efficiency were studied. The conversion efficiency reached 99.1% when the conversion conditions were optimized, i.e., an oil to t-butanol weight ratio of 1:1, an oil to methanol molar ratio of 1:12, and a reaction time of 4h at 25°C. The enzymatic conversion process developed in this study may hold a promise for low energy consumption, low wastewater-discharge biochemical conversion of algal feedstocks into biofuels.


Assuntos
Biocombustíveis , Biotecnologia/métodos , Eucariotos/metabolismo , Lipase/metabolismo , Petróleo/metabolismo , Estabilidade Enzimática , Eucariotos/enzimologia , Eucariotos/crescimento & desenvolvimento , Lipídeos/biossíntese , Metanol/metabolismo , Plantas/metabolismo , Temperatura , Fatores de Tempo
19.
BMC Genomics ; 15: 800, 2014 Sep 17.
Artigo em Inglês | MEDLINE | ID: mdl-25230797

RESUMO

BACKGROUND: Nucleotide metabolism is central to all biological systems, due to their essential role in genetic information and energy transfer, which in turn suggests its possible presence in the last common ancestor (LCA) of Bacteria, Archaea and Eukarya. In this context, elucidation of the contribution of the origin and diversification of de novo and salvage pathways of nucleotide metabolism will allow us to understand the links between the enzymatic steps associated with the LCA and the emergence of the first metabolic pathways. RESULTS: In this work, the taxonomical distribution of the enzymes associated with nucleotide metabolism was evaluated in 1,606 complete genomes. 151 sequence profiles associated with 120 enzymatic reactions were used. The evaluation was based on profile comparisons, using RPS-Blast. Organisms were clustered based on their taxonomical classifications, in order to obtain a normalized measure of the taxonomical distribution of enzymes according to the average of presence/absence of enzymes per genus, which in turn was used for the second step, to calculate the average presence/absence of enzymes per Clade. CONCLUSION: From these analyses, it was suggested that divergence at the enzymatic level correlates with environmental changes and related modifications of the cell wall and membranes that took place during cell evolution. Specifically, the divergence of the 5-(carboxyamino) imidazole ribonucleotide mutase to phosphoribosylaminoimidazole carboxylase could be related to the emergence of multicellularity in eukaryotic cells. In addition, segments of salvage and de novo pathways were probably complementary in the LCA to the synthesis of purines and pyrimidines. We also suggest that a large portion of the pathway to inosine 5'-monophosphate (IMP) in purines could have been involved in thiamine synthesis or its derivatives in early stages of cellular evolution, correlating with the fact that these molecules may have played an active role in the protein-RNA world. The analysis presented here provides general observations concerning the adaptation of the enzymatic steps in the early stages of the emergence of life and the LCA.


Assuntos
Archaea/genética , Bactérias/genética , Eucariotos/genética , Evolução Molecular , Genômica , Nucleotídeos/metabolismo , Archaea/metabolismo , Bactérias/metabolismo , Eucariotos/metabolismo
20.
Bioresour Technol ; 152: 484-9, 2014.
Artigo em Inglês | MEDLINE | ID: mdl-24333625

RESUMO

The objectives of this study were to determine nutrient removal rates and costs using solar-powered algal turf scrubber (ATS) raceways and water from an agricultural drainage ditch. Algal productivity using daytime-only flow was 3-lower compared to productivity using continuous flow. Results from this and other studies suggest a non-linear relationship between flow rate and nitrogen removal rates. Nitrogen (N) and phosphorus (P) removal rates averaged 125 mg N, 25 mg P m(-2) d(-1) at the highest flow rates. Nutrient removal rates were equivalent to 310 kg N and 33 kg P ha(-1) over a 7 month season. Projected nutrient removal costs ($90-$110 kg(-1) N or $830-$1050 kg(-1) P) are >10-fold higher than previous estimates for ATS units used to treat manure effluents.


Assuntos
Agricultura , Recuperação e Remediação Ambiental/métodos , Eucariotos/metabolismo , Nitrogênio/isolamento & purificação , Fósforo/isolamento & purificação , Energia Solar , Águas Residuárias/química , Biodegradação Ambiental , Biomassa , Custos e Análise de Custo , Eletricidade , Recuperação e Remediação Ambiental/economia , Águas Residuárias/economia , Poluentes Químicos da Água/economia , Poluentes Químicos da Água/isolamento & purificação , Purificação da Água/economia
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