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1.
Arch Virol ; 166(5): 1427-1431, 2021 May.
Artigo em Inglês | MEDLINE | ID: mdl-33682071

RESUMO

Potato aucuba mosaic virus (PAMV), a positive single-strand RNA virus, has one of the longest genomes of the viruses in the genus Potexvirus. In 2019, potato samples with mottle and crinkling symptoms from Huzhou, Zhejiang province, China, were identified to be infected with PAMV, potato virus X (PVX), and potato virus Y (PVY) by transcriptome sequencing. To study the effects of single infection by PAMV, the full-length sequence of PAMV from Huzhou (MT193476) was determined and an infectious full-length cDNA clone was constructed. This cDNA clone was infectious by agro-infiltration, leading to systemic symptoms in Nicotiana benthamiana, tomato, pepper, and potato.


Assuntos
Potexvirus/genética , Potexvirus/patogenicidade , Clonagem Molecular , DNA Complementar , Genoma Viral/genética , Filogenia , Doenças das Plantas/virologia , Plantas/classificação , Plantas/virologia , Potexvirus/classificação , Potexvirus/isolamento & purificação , RNA Viral/genética , Genética Reversa , Solanum tuberosum/virologia
2.
Sci Rep ; 10(1): 2045, 2020 02 06.
Artigo em Inglês | MEDLINE | ID: mdl-32029861

RESUMO

Genome editing is a powerful tool for plant functional genomics allowing for multiallelic targeted mutagenesis. The recent development of Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)/CRISPR associated protein 9 (Cas9) systems for gene editing in plants allows for simple, cost-effective introduction of site-specific double-stranded DNA breaks. The nuclear genomes of a homozygous doubled-monoploid potato clone (DM) and a heterozygous diploid clone (RH) have been sequenced in 2011. However, common potato cultivars display a highly heterozygous autotetraploid genome thus complicating target design for tetra-allelic gene editing. Here, we report on the SNP physical map of the widely used Solanum tuberosum L. cv. Desiree and on the position of the diverse indels providing an essential tool for target design in genome editing approaches. We used this tool for designing a specific gRNA and successfully knocking-out a newly discovered starch synthase gene (SS6) in potato. Resequencing data are publicly available at the Sequence Read Archive of the NCBI (accession number: PRJNA507597) and will represent a valuable resource for functional genomic studies of various metabolic pathways, cell and plant physiology as well as high-throughput reverse genetics in potato.


Assuntos
Edição de Genes/métodos , Genoma de Planta/genética , Genética Reversa , Solanum tuberosum/genética , Sistemas CRISPR-Cas/genética , Técnicas de Inativação de Genes , Sequenciamento de Nucleotídeos em Larga Escala , Anotação de Sequência Molecular , Mutagênese , Proteínas de Plantas/genética , Plantas Geneticamente Modificadas , Polimorfismo de Nucleotídeo Único , RNA Guia de Cinetoplastídeos/genética , Sintase do Amido/genética
3.
Sci Rep ; 10(1): 1604, 2020 01 31.
Artigo em Inglês | MEDLINE | ID: mdl-32005880

RESUMO

Aphids are important agricultural pests causing major yield losses worldwide. Since aphids can rapidly develop resistance to chemical insecticides there is an urgent need to find alternative aphid pest management strategies. Despite the economic importance of bluegreen aphid (Acyrthosiphon kondoi), very few genetic resources are available to expand our current understanding and help find viable control solutions. An artificial diet is a desirable non-invasive tool to enable the functional characterisation of genes in bluegreen aphid and discover candidate target genes for future use in RNA interference (RNAi) mediated crop protection against aphids. To date no artificial diet has been developed for bluegreen aphid, so we set out to develop a suitable diet by testing and optimising existing diets. Here, we describe an artificial diet for rearing bluegreen aphid and also provide a proof of concept for the supplementation of the diet with RNAi molecules targeting the salivary gland transcript C002 and gap gene hunchback, resulting in bluegreen aphid mortality which has not yet been documented in this species. Managing this pest, for example via RNAi delivery through artificial feeding will be a major improvement to test bluegreen aphid candidate target genes for future pest control and gain significant insights into bluegreen aphid gene function.


Assuntos
Afídeos/genética , Suplementos Nutricionais , Fabaceae/parasitologia , Interferência de RNA/fisiologia , Animais , Dieta/métodos , Medicago truncatula/parasitologia , Fenótipo , Doenças das Plantas/parasitologia , Genética Reversa/métodos , Glândulas Salivares/parasitologia
4.
Sci Rep ; 9(1): 5291, 2019 03 28.
Artigo em Inglês | MEDLINE | ID: mdl-30923355

RESUMO

Voltage-gated sodium channels (VGSC) are transmembrane proteins that generate an action potential in excitable cells and play an essential role in neuronal signaling. Since VGSCs play a crucial role in nerve transmission they have become primary targets for a broad range of commercial insecticides. RNA interference (RNAi) is a valuable reverse genetics tool used in functional genomics, but recently, it has also shown promise as a novel agent that could be used to control agricultural insect pests. In this study, we targeted the VGSC (MpNav) gene in the peach-potato aphid Myzus persicae, by oral feeding of artificial diets mixed with dsRNAs. Knock-down of MpNav gene expression caused up to 65% mortality in 3rd instar nymphs. Moreover, significantly lower fecundity and longevity was observed in adult aphids that had been fed with dsMpNav solution at the nymphal stage. Analysis of gene expression by qRT-PCR indicated that the aphid mortality rates and the lowered fecundity and longevity were attributable to the down-regulation of MpNav by RNAi. Taken together, our results show that MpNav is a viable candidate target gene for the development of an RNAi-based bio-aphicide.


Assuntos
Afídeos/genética , Agentes de Controle Biológico , Interferência de RNA , RNA de Cadeia Dupla/genética , Canais de Sódio Disparados por Voltagem/genética , Animais , Produção Agrícola , Fertilidade/genética , Técnicas de Silenciamento de Genes , Genes de Insetos , Longevidade/genética , Prunus persica/parasitologia , Genética Reversa , Solanum tuberosum/parasitologia , Fatores de Tempo
5.
N Biotechnol ; 49: 58-65, 2019 Mar 25.
Artigo em Inglês | MEDLINE | ID: mdl-30194997

RESUMO

Resolution of old problems with new tools seems to be a new way of challenging and finding the keys to innovation. A holistic view of different branches of science and industry, including services for society, is critically important for the development of modern science. The International Congress Eurobiotech 2017 was a special opportunity for such a universal view. In this paper, we discuss the application of different small RNAs, stem cells, epigenetics and sequencing, as well as art and bioeconomy. Our most significant message is not a new one but is very universal: biotechnology is vital for society.


Assuntos
Biotecnologia , Invenções , Qualidade de Vida , Biotecnologia/economia , Humanos , Genética Reversa , Pesquisa com Células-Tronco
6.
Viruses ; 10(12)2018 12 09.
Artigo em Inglês | MEDLINE | ID: mdl-30544871

RESUMO

Zika virus (ZIKV) is a mosquito-borne flavivirus that has emerged as an important human viral pathogen, causing congenital malformation including microcephaly among infants born to mothers infected with the virus during pregnancy. Phylogenetic analysis suggested that ZIKV can be classified into African and Asian lineages. In this study, we have developed a stable plasmid-based reverse genetic system for robust production of both ZIKV prototype African-lineage MR766 and clinical Asian-lineage FSS13025 strains using a tetracycline (Tet)-controlled gene expression vector. Transcription of the full-length ZIKV RNA is under the control of the Tet-responsive Ptight promoter at the 5' end and an antigenomic ribozyme of hepatitis delta virus at the 3' end. The transcription of infectious ZIKV RNA genome was efficiently induced by doxycycline. This novel ZIKV reverse genetics system will be valuable for the study of molecular viral pathogenesis of ZIKV and the development of new vaccines against ZIKV infection.


Assuntos
Vetores Genéticos , Regiões Promotoras Genéticas , Genética Reversa , Tetraciclina/farmacologia , Zika virus/genética , África , Ásia , Células Cultivadas , Clonagem Molecular , DNA Complementar/genética , Doxiciclina/farmacologia , Genoma Viral , Vírus Delta da Hepatite/genética , Filogenia , Plasmídeos , Replicação Viral , Zika virus/patogenicidade
7.
Viruses ; 10(11)2018 11 20.
Artigo em Inglês | MEDLINE | ID: mdl-30463334

RESUMO

Lassa virus (LASV), a mammarenavirus, infects an estimated 100,000⁻300,000 individuals yearly in western Africa and frequently causes lethal disease. Currently, no LASV-specific antivirals or vaccines are commercially available for prevention or treatment of Lassa fever, the disease caused by LASV. The development of medical countermeasure screening platforms is a crucial step to yield licensable products. Using reverse genetics, we generated a recombinant wild-type LASV (rLASV-WT) and a modified version thereof encoding a cleavable green fluorescent protein (GFP) as a reporter for rapid and quantitative detection of infection (rLASV-GFP). Both rLASV-WT and wild-type LASV exhibited similar growth kinetics in cultured cells, whereas growth of rLASV-GFP was slightly impaired. GFP reporter expression by rLASV-GFP remained stable over several serial passages in Vero cells. Using two well-characterized broad-spectrum antivirals known to inhibit LASV infection, favipiravir and ribavirin, we demonstrate that rLASV-GFP is a suitable screening tool for the identification of LASV infection inhibitors. Building on these findings, we established a rLASV-GFP-based high-throughput drug discovery screen and an rLASV-GFP-based antibody neutralization assay. Both platforms, now available as a standard tool at the IRF-Frederick (an international resource), will accelerate anti-LASV medical countermeasure discovery and reduce costs of antiviral screens in maximum containment laboratories.


Assuntos
Avaliação Pré-Clínica de Medicamentos/métodos , Genes Reporter , Proteínas de Fluorescência Verde/análise , Vírus Lassa/crescimento & desenvolvimento , Substâncias Luminescentes/análise , Testes de Neutralização/métodos , Coloração e Rotulagem/métodos , Animais , Anticorpos Neutralizantes/imunologia , Antivirais/farmacologia , Chlorocebus aethiops , Fluorometria/métodos , Instabilidade Genômica , Proteínas de Fluorescência Verde/genética , Vírus Lassa/efeitos dos fármacos , Vírus Lassa/genética , Vírus Lassa/imunologia , Genética Reversa , Ribavirina/farmacologia , Células Vero
8.
Antiviral Res ; 157: 57-67, 2018 09.
Artigo em Inglês | MEDLINE | ID: mdl-29981794

RESUMO

The New World alphaviruses -Venezuelan, eastern, and western equine encephalitis viruses (VEEV, EEEV, and WEEV respectively) - cause a febrile disease that is often lethal in equines and children and leads to long-term neurological sequelae in survivors. Endemic to the Americas, epizootic outbreaks of the three viruses occur sporadically in the continental United States. All three viruses aerosolize readily, replicate to high titers in cell culture, and have low infectious doses. Additionally, there are no FDA-approved vaccines or therapeutics for human use. To address the therapeutic gap, a high throughput assay utilizing a luciferase reporter virus, TC83-luc, was performed to screen a library of commercially available, FDA-approved drugs for antiviral activity. From a group of twenty compounds found to significantly decrease luminescence, the carcinoma therapeutic sorafenib inhibited replication of VEEV-TC83 and TrD in vitro. Additionally, sorafenib inhibited replication of EEEV and two Old World alphaviruses, Sindbis virus and chikungunya virus, at 8 and 16 h post-infection. Sorafenib caused no toxicity in Vero cells, and coupled with a low EC50 value, yielded a selectivity index of >19. Mechanism of actions studies suggest that sorafenib inhibited viral translation through dephosphorylation of several key proteins, including eIF4E and p70S6K, leading to a reduction in viral protein production and overall viral replication.


Assuntos
Alphavirus/efeitos dos fármacos , Antineoplásicos/farmacologia , Antivirais/farmacologia , Reposicionamento de Medicamentos , Sorafenibe/farmacologia , Replicação Viral/efeitos dos fármacos , Alphavirus/crescimento & desenvolvimento , Animais , Linhagem Celular , Avaliação Pré-Clínica de Medicamentos/métodos , Genes Reporter , Ensaios de Triagem em Larga Escala , Luciferases/análise , Luciferases/genética , Medições Luminescentes , Genética Reversa
9.
Antiviral Res ; 157: 140-150, 2018 09.
Artigo em Inglês | MEDLINE | ID: mdl-30031760

RESUMO

Infection with Junín virus (JUNV) is currently being effectively managed in the endemic region using a combination of targeted vaccination and plasma therapy. However, the long-term sustainability of plasma therapy is unclear and similar resources are not available for other New World arenaviruses. As a result, there has been renewed interest regarding the potential of drug-based therapies. To facilitate work on this issue, we present the establishment and subsequent optimization of a JUNV minigenome system to a degree suitable for high-throughput miniaturization, thereby providing a screening platform focused solely on factors affecting RNA synthesis. Using this tool, we conducted a limited drug library screen and identified AVN-944, a non-competitive inosine monophosphate dehydrogenase (IMPDH) inhibitor, as an inhibitor of arenavirus RNA synthesis. We further developed a transcription and replication competent virus-like particle (trVLP) system based on these minigenomes and used it to screen siRNAs against IMPDH, verifying its role in supporting arenavirus RNA synthesis. The antiviral effect of AVN-944, as well as siRNA inhibition, on JUNV RNA synthesis supports that, despite playing only a minor role in the activity of ribavirin, exclusive IMPDH inhibitors may indeed have significant therapeutic potential for use against New World arenaviruses. Finally, we confirmed that AVN-944 is also active against arenavirus infection in cell culture, supporting the suitability of arenavirus lifecycle modelling systems as tools for the screening and identification, as well as the mechanistic characterization, of novel antiviral compounds.


Assuntos
Antivirais/isolamento & purificação , Carbamatos/isolamento & purificação , Inibidores Enzimáticos/isolamento & purificação , IMP Desidrogenase/metabolismo , Vírus Junin/efeitos dos fármacos , Vírus Junin/crescimento & desenvolvimento , Compostos de Fenilureia/isolamento & purificação , Animais , Antivirais/farmacologia , Carbamatos/farmacologia , Linhagem Celular , Avaliação Pré-Clínica de Medicamentos/métodos , Inibidores Enzimáticos/farmacologia , Humanos , IMP Desidrogenase/antagonistas & inibidores , Vírus Junin/genética , Compostos de Fenilureia/farmacologia , Genética Reversa/métodos , Transcrição Gênica/efeitos dos fármacos , Cultura de Vírus , Replicação Viral/efeitos dos fármacos
10.
Antiviral Res ; 157: 120-127, 2018 09.
Artigo em Inglês | MEDLINE | ID: mdl-30057296

RESUMO

Recently, a newly emerged avian flavivirus, duck Tembusu virus (TMUV), was identified as the causative agent of a serious duck viral disease in Asia. Its rapid spread and expanded host range have raised substantial concerns regarding its potential threat to non-avian hosts, including humans. In this study, we report an infectious cDNA clone for a clinical strain CQW1 isolated from Southwest China, which is representative of the disease outbreak in the Chinese mainland. We generated a full-length cDNA clone pACYC FL-TMUV, which is infectious, and this cDNA clone-derived recombinant TMUV (rTMUV) showed comparative growth kinetics in both BHK21 cells and DEF cells compared with parental TMUV (pTMUV). In addition, rTMUV also showed the same high virulence in 9-day-old duck embryos as that in pTMUV, suggesting that rTMUV possessed similar properties to the natural virus both in vitro and in vivo. Based on the cDNA-clone, we first generated a reporter TMUV (TMUV-RLuc) carrying a Renilla luciferase (RLuc) gene. The luciferase kinetics of TMUV-RLuc were determined both in BHK21 and DEF cells. It seems that TMUV-RLuc grew well in vitro; however, the insertion of the RLuc gene attenuated viral replication in vitro. The higher viral titres of TMUV-RLuc were observed in BHK21 compared with that in DEF cells. The antiviral effects of exogenous-expressed duck RIG-I, MDA5, STING, MAVS, TBK1, IFNα and IFNγ were studied in vitro by using TMUV-RLuc. Our reverse genetics system will provide a multicomponent platform for the pathogenesis study of duck TMUV and the development of molecular countermeasures against duck TMUV infection.


Assuntos
Avaliação Pré-Clínica de Medicamentos/métodos , Flavivirus/genética , Genética Reversa/métodos , Virologia/métodos , Animais , Antivirais/isolamento & purificação , Antivirais/farmacologia , Doenças das Aves/epidemiologia , Doenças das Aves/virologia , Células Cultivadas , China , Cricetinae , DNA Complementar/genética , DNA Viral/genética , Surtos de Doenças , Patos , Flavivirus/efeitos dos fármacos , Flavivirus/isolamento & purificação , Flavivirus/patogenicidade , Infecções por Flavivirus/epidemiologia , Infecções por Flavivirus/veterinária , Infecções por Flavivirus/virologia , Genes Reporter , Luciferases de Renilla/análise , Luciferases de Renilla/genética , Coloração e Rotulagem , Análise de Sobrevida , Virulência
11.
Plant J ; 92(6): 1076-1091, 2017 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-29031031

RESUMO

In plants, normal anther and pollen development involves many important biological events and complex molecular regulatory coordination. Understanding gene regulatory relationships during male reproductive development is essential for fundamental biology and crop breeding. In this work, we developed a rice gene co-expression network for anther development (RiceAntherNet) that allows prediction of gene regulatory relationships during pollen development. RiceAntherNet was generated from 57 rice anther tissue microarrays across all developmental stages. The microarray datasets from nine rice male sterile mutants, including msp1-4, ostdl1a, gamyb-2, tip2, udt1-1, tdr, eat1-1, ptc1 and mads3-4, were used to explore and test the network. Among the changed genes, three clades showing differential expression patterns were constructed to identify genes associated with pollen formation. Many of these have known roles in pollen development, for example, seven genes in Clade 1 (OsABCG15, OsLAP5, OsLAP6, DPW, CYP703A3, OsNP1 and OsCP1) are involved in rice pollen wall formation. Furthermore, Clade 1 contained 12 genes whose predicted orthologs in Arabidopsis have been reported as key during pollen development and may play similar roles in rice. Genes in Clade 2 are expressed earlier than Clade 1 (anther stages 2-9), while genes in Clade 3 are expressed later (stages 10-12). RiceAntherNet serves as a valuable tool for identifying novel genes during plant anther and pollen development. A website is provided (https://www.cpib.ac.uk/anther/riceindex.html) to present the expression profiles for gene characterization. This will assist in determining the key relationships between genes, thus enabling characterization of critical genes associated with anther and pollen regulatory networks.


Assuntos
Bases de Dados Genéticas , Redes Reguladoras de Genes , Oryza/genética , Análise por Conglomerados , Flores/genética , Flores/crescimento & desenvolvimento , Perfilação da Expressão Gênica , Anotação de Sequência Molecular , Análise de Sequência com Séries de Oligonucleotídeos , Oryza/crescimento & desenvolvimento , Filogenia , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Pólen/genética , Pólen/crescimento & desenvolvimento , Reprodução , Genética Reversa
12.
PLoS Negl Trop Dis ; 10(10): e0005058, 2016 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-27755544

RESUMO

BACKGROUND: The lack of new anthelmintic agents is of growing concern because it affects human health and our food supply, as both livestock and plants are affected. Two principal factors contribute to this problem. First, nematode resistance to anthelmintic drugs is increasing worldwide and second, many effective nematicides pose environmental hazards. In this paper we address this problem by deploying a high throughput screening platform for anthelmintic drug discovery using the nematode Caenorhabditis elegans as a surrogate for infectious nematodes. This method offers the possibility of identifying new anthelmintics in a cost-effective and timely manner. METHODS/PRINCIPAL FINDINGS: Using our high throughput screening platform we have identified 14 new potential anthelmintics by screening more than 26,000 compounds from the Chembridge and Maybridge chemical libraries. Using phylogenetic profiling we identified a subset of the 14 compounds as potential anthelmintics based on the relative sensitivity of C. elegans when compared to yeast and mammalian cells in culture. We showed that a subset of these compounds might employ mechanisms distinct from currently used anthelmintics by testing diverse drug resistant strains of C. elegans. One of these newly identified compounds targets mitochondrial complex II, and we used structural analysis of the target to suggest how differential binding of this compound may account for its different effects in nematodes versus mammalian cells. CONCLUSIONS/SIGNIFICANCE: The challenge of anthelmintic drug discovery is exacerbated by several factors; including, 1) the biochemical similarity between host and parasite genomes, 2) the geographic location of parasitic nematodes and 3) the rapid development of resistance. Accordingly, an approach that can screen large compound collections rapidly is required. C. elegans as a surrogate parasite offers the ability to screen compounds rapidly and, equally importantly, with specificity, thus reducing the potential toxicity of these compounds to the host and the environment. We believe this approach will help to replenish the pipeline of potential nematicides.


Assuntos
Antinematódeos/farmacologia , Caenorhabditis elegans/efeitos dos fármacos , Caenorhabditis elegans/genética , Infecções por Nematoides/parasitologia , Animais , Caenorhabditis elegans/fisiologia , Avaliação Pré-Clínica de Medicamentos , Humanos , Nematoides/efeitos dos fármacos , Nematoides/genética , Nematoides/fisiologia , Infecções por Nematoides/tratamento farmacológico , Genética Reversa
13.
J Virol ; 90(19): 8422-34, 2016 10 01.
Artigo em Inglês | MEDLINE | ID: mdl-27412600

RESUMO

UNLABELLED: Aminoquinolines and piperazines, linked or not, have been used successfully to treat malaria, and some molecules of this family also exhibit antiviral properties. Here we tested several derivatives of 4-aminoquinolines and piperazines for their activity against hepatitis C virus (HCV). We screened 11 molecules from three different families of compounds, and we identified anti-HCV activity in cell culture for six of them. Of these, we selected a compound (B5) that is currently ending clinical phase I evaluation for neurodegenerative diseases. In hepatoma cells, B5 inhibited HCV infection in a pangenotypic and dose-dependent manner, and its antiviral activity was confirmed in primary hepatocytes. B5 also inhibited infection by pseudoparticles expressing HCV envelope glycoproteins E1 and E2, and we demonstrated that it affects a postattachment stage of the entry step. Virus with resistance to B5 was selected by sequential passage in the presence of the drug, and reverse genetics experiments indicated that resistance was conferred mainly by a single mutation in the putative fusion peptide of E1 envelope glycoprotein (F291I). Furthermore, analyses of the effects of other closely related compounds on the B5-resistant mutant suggest that B5 shares a mode of action with other 4-aminoquinoline-based molecules. Finally, mice with humanized liver that were treated with B5 showed a delay in the kinetics of the viral infection. In conclusion, B5 is a novel interesting anti-HCV molecule that could be used to decipher the early steps of the HCV life cycle. IMPORTANCE: In the last 4 years, HCV therapy has been profoundly improved with the approval of direct-acting antivirals in clinical practice. Nevertheless, the high costs of these drugs limit access to therapy in most countries. The present study reports the identification and characterization of a compound (B5) that inhibits HCV propagation in cell culture and is currently ending clinical phase I evaluation for neurodegenerative diseases. This molecule inhibits the HCV life cycle by blocking virus entry. Interestingly, after selection of drug-resistant virus, a resistance mutation in the putative fusion peptide of E1 envelope glycoprotein was identified, indicating that B5 could be used to further investigate the fusion mechanism. Furthermore, mice with humanized liver treated with B5 showed a delay in the kinetics of the viral infection. In conclusion, B5 is a novel interesting anti-HCV molecule that could be used to decipher the early steps of the HCV life cycle.


Assuntos
Aminoquinolinas/farmacologia , Antivirais/farmacologia , Hepacivirus/efeitos dos fármacos , Aminoquinolinas/química , Aminoquinolinas/isolamento & purificação , Animais , Antivirais/química , Antivirais/isolamento & purificação , Células Cultivadas , Modelos Animais de Doenças , Avaliação Pré-Clínica de Medicamentos , Farmacorresistência Viral , Hepatite C/tratamento farmacológico , Hepatócitos/virologia , Humanos , Camundongos , Camundongos SCID , Modelos Moleculares , Estrutura Molecular , Mutação de Sentido Incorreto , Genética Reversa , Resultado do Tratamento , Proteínas do Envelope Viral/genética , Internalização do Vírus/efeitos dos fármacos
14.
FEBS J ; 283(19): 3556-3562, 2016 10.
Artigo em Inglês | MEDLINE | ID: mdl-27090388

RESUMO

Reverse genetic analysis can connect a gene and its protein counterpart to a biological function(s) by knockout or knockdown of the specific gene. However, when a protein has multiple biochemical activities, the conventional genetics strategy is incapable of distinguishing which biochemical activity of the protein is critical for the particular biological function(s). Here, we propose a structural reverse genetics strategy to overcome this problem. In a structural reverse genetics study, multiple biochemical activities of a protein are segregated by mapping those activities to a structural element(s) in the atomic resolution tertiary structure. Based on the structural mapping, a mutant lacking one biochemical activity of interest can be produced with the other activities kept intact. Expression of the mutant by knockin or ectopic expression in the knockout strain along with the following analysis can connect the single biochemical activity of interest to a biological function. Using the structural reverse genetics strategy, we have dissected the newly identified GTP-dependent activity of a lipid kinase PI5P4Kß from its ATP-dependent activity. The GTP-insensitive mutant has demonstrated the existence of the GTP bioenergetic sensor system in mammalian cells and its critical role in tumorigenesis. As structural reverse genetics can identify in vivo significance of individual biochemical activity, it is a powerful approach to reveal hidden biological functions, which could be a novel pharmacological target for therapeutic intervention. Given the recent expansion of choices in structural biological methods and advances in genome editing technologies, the time is ripe for structural reverse genetics strategies.


Assuntos
Guanosina Trifosfato/química , Antígenos de Histocompatibilidade Menor/química , Antígenos de Histocompatibilidade Menor/genética , Fosfotransferases (Aceptor do Grupo Álcool)/química , Fosfotransferases (Aceptor do Grupo Álcool)/genética , Genética Reversa/métodos , Trifosfato de Adenosina/química , Trifosfato de Adenosina/metabolismo , Animais , Metabolismo Energético , Guanosina Trifosfato/metabolismo , Humanos , Camundongos , Modelos Moleculares , Mutação , Ligação Proteica
15.
Vaccine ; 34(23): 2627-33, 2016 05 17.
Artigo em Inglês | MEDLINE | ID: mdl-27083426

RESUMO

The continuous and sporadic human transmission of highly pathogenic avian H5N1 and H7N9 influenza viruses illustrates the urgent need for efficacious vaccines. However, all tested vaccines for the H5N1 and H7N9 viruses appear to be poorly immunogenic in mammals. In this study, a series of vaccines was produced using reverse genetic techniques that possess HA and NA genes from the H5N1 virus in the genetic background of the high-yield strain A/PR/8/34 (H1N1). Meanwhile, a group of H7N9 VLP vaccines that contain HA from H7N9 and NA and M1 from A/PR/8/34 (H1N1) was also produced. The HA amino acids of both the H5N1 and H7N9 vaccines differed at residues 226 and 228, both of which are critical for receptor specificity for an avian or mammalian host. Mice received two doses (3µg of HA each) of each vaccine and were challenged with lethal doses of wild type H5N1 or H7N9 viruses. The results showed that a recombinant H5N1 vaccine in which the HA amino acid G228 (avian specificity) was converted to S228 (mammalian specificity) resulted in higher HI titers, a lower viral titer in the lungs, and 100% protection in mice. However, a H7N9 VLP vaccine that contains L226 (mammalian specificity) and G228 (avian specificity) in HA showed better immunogenicity and protection efficacy in mice than VLP containing HA with either L226+S228 or Q226+S228. This observation indicated that specific HA residues could enhance a vaccine's protection efficacy and HA glycoproteins with both avian-type and human-type receptor specificities may produce better pandemic influenza vaccines for humans.


Assuntos
Glicoproteínas de Hemaglutininação de Vírus da Influenza/imunologia , Virus da Influenza A Subtipo H5N1 , Subtipo H7N9 do Vírus da Influenza A , Vacinas contra Influenza/imunologia , Infecções por Orthomyxoviridae/prevenção & controle , Aminoácidos/imunologia , Animais , Feminino , Testes de Inibição da Hemaglutinação , Pulmão/patologia , Pulmão/virologia , Camundongos , Camundongos Endogâmicos BALB C , Receptores Virais/imunologia , Genética Reversa , Vacinas Sintéticas/imunologia
16.
Virology ; 484: 259-264, 2015 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-26122472

RESUMO

Previous studies have demonstrated the potential application of reverse genetics technology in studying a broad range of aspects of viral biology, including gene regulation, protein function, cell entry, and pathogenesis. Here, we describe a highly efficient reverse genetics system used to generate recombinant Ebola virus (EBOV) based on a recent isolate from a human patient infected during the 2014-2015 outbreak in Western Africa. We also rescued a recombinant EBOV expressing a fluorescent reporter protein from a cleaved VP40 protein fusion. Using this virus and an inexpensive method to quantitate the expression of the foreign gene, we demonstrate its potential usefulness as a tool for screening antiviral compounds and measuring neutralizing antibodies.


Assuntos
Ebolavirus/genética , Proteínas de Fluorescência Verde/biossíntese , Genética Reversa/métodos , África Ocidental , Anticorpos Neutralizantes/isolamento & purificação , Anticorpos Antivirais/isolamento & purificação , Antivirais/isolamento & purificação , Avaliação Pré-Clínica de Medicamentos/métodos , Ebolavirus/isolamento & purificação , Genes Reporter , Proteínas de Fluorescência Verde/genética , Doença pelo Vírus Ebola/virologia , Humanos , Dados de Sequência Molecular , RNA Viral/genética , Análise de Sequência de DNA , Coloração e Rotulagem
17.
J Virol ; 89(16): 8428-43, 2015 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-26041296

RESUMO

UNLABELLED: Certain members of the Arenaviridae family are category A agents capable of causing severe hemorrhagic fevers in humans. Specific antiviral treatments do not exist, and the only commonly used drug, ribavirin, has limited efficacy and can cause severe side effects. The discovery and development of new antivirals are inhibited by the biohazardous nature of the viruses, making them a relatively poorly understood group of human pathogens. We therefore adapted a reverse-genetics minigenome (MG) rescue system based on Junin virus, the causative agent of Argentine hemorrhagic fever, for high-throughput screening (HTS). The MG rescue system recapitulates all stages of the virus life cycle and enables screening of small-molecule libraries under biosafety containment level 2 (BSL2) conditions. The HTS resulted in the identification of four candidate compounds with potent activity against a broad panel of arenaviruses, three of which were completely novel. The target for all 4 compounds was the stage of viral entry, which positions the compounds as potentially important leads for future development. IMPORTANCE: The arenavirus family includes several members that are highly pathogenic, causing acute viral hemorrhagic fevers with high mortality rates. No specific effective treatments exist, and although a vaccine is available for Junin virus, the causative agent of Argentine hemorrhagic fever, it is licensed for use only in areas where Argentine hemorrhagic fever is endemic. For these reasons, it is important to identify specific compounds that could be developed as antivirals against these deadly viruses.


Assuntos
Antivirais/farmacologia , Infecções por Arenaviridae/prevenção & controle , Arenavirus/fisiologia , Avaliação Pré-Clínica de Medicamentos/métodos , Ensaios de Triagem em Larga Escala/métodos , Internalização do Vírus/efeitos dos fármacos , Antivirais/isolamento & purificação , Humanos , Vírus Junin/genética , Genética Reversa/métodos
18.
Salud pública Méx ; 57(3): 227-233, may.-jun. 2015. ilus, tab
Artigo em Espanhol | LILACS | ID: lil-756601

RESUMO

Objetivo. Conocer las necesidades percibidas de salud mental de migrantes centroamericanos indocumentados en tránsito por la ciudad de Tapachula, Chiapas. Material y métodos. Estudio cualitativo realizado en Casa de Migrantes de Tapachula, Chiapas. Se realizaron 20 entrevistas semiestructuradas a diez mujeres y diez hombres migrantes. Se exploró el estado de salud mental y las expectativas de atención. Se retomaron nociones teórico-metodológicas de la fenomenología sociológica. Resultados. Los migrantes presentaban signos y síntomas de daños en su salud mental relacionados con experiencias vividas en el lugar de origen y en el tránsito por México. La percepción sobre su salud mental es influida por el modelo biomédico hegemónico. Las expectativas de servicios se relacionaron con la satisfacción de necesidades básicas. Conclusiones. Es necesario fortalecer la respuesta del sistema de atención en salud mental a partir de estrategias de cooperación y emprender acciones que promuevan la superación de una construcción biomédica de salud mental que estigmatiza, medicaliza, segrega y dificulta el acceso a servicios.


Objective. To identify the perception and needs in mental health of Central American migrants in transit through Tapachula, Chiapas. Materials and methods. Qualitative study in a migrant shelter in Tapachula, Chiapas. In 20 semi-structured interviews with migrant men and women, we explored their perceptions on mental health and expectations on care. We used basic notions of phenomenology to guide the analysis. Results. Migrants had several mental health problems related to the conditions at their country of origin and due to their initial transit through Mexico.Their perception on mental health problems was heavily influenced by the biomedical health paradigm. The expectations they had on the provision of services were related to the satisfaction of basic needs. Conclusions. It is necessary to strengthen the governmental response to mental health needs through collaborative strategies. Also, actions are needed to further the understanding of mental health in order to transcend the biomedical notions that stigmatize, segregate and create a barrier to accessing services.


Assuntos
Humanos , Genética Reversa/métodos , Rhinovirus/genética , Rhinovirus/patogenicidade , Clonagem Molecular , DNA Complementar/síntese química , Células HeLa/virologia , Reação em Cadeia da Polimerase/métodos , RNA Viral/isolamento & purificação , Rhinovirus/crescimento & desenvolvimento , Transfecção
19.
Appl Biochem Biotechnol ; 175(5): 2390-8, 2015 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-25492686

RESUMO

Transformation approach is a useful tool for the study of gene function, the mechanism of molecular regulation, and increase usefulness of components by reverse genetic approach in plants. In this study, we developed a stable and rapid method for Agrobacterium-mediated transformation of a medicinal plant Chelone glabra L. using leaf explants. Stable transformants were obtained using Agrobacterium tumefaciens strains GV2260 and GV3101 that harbored the binary vector pBI121 and contained the neomycin phosphotransferase gene (NPT II) as a selectable marker and a reporter gene ß-glucuronidase (GUS). Putative transformants were identified by kanamycin selection and a histochemical assay. PCR and Southern blot analysis confirmed the integration of the GUS gene into transformed genomes as well as detected stable expression of the ß-glucuronidase gene (GUS) by RT-PCR. Resulting transformed plants had morphologically normal phenotypes. This method requires two changes of medium and few leaf explants as well as the transformation efficiency of 2-8 % after 2-3 months of inoculation. This method can provide a quick and economical transformation method for reverse genetic approach to change the secondary metabolic pathway to increase useful components in C. glabra.


Assuntos
Agrobacterium tumefaciens/genética , Plantago/genética , Plantas Medicinais/genética , Genética Reversa/métodos , Transformação Genética , Agrobacterium tumefaciens/metabolismo , Genes Reporter , Vetores Genéticos/genética , Vetores Genéticos/metabolismo , Folhas de Planta/genética , Folhas de Planta/metabolismo , Plantago/metabolismo , Plantas Medicinais/metabolismo
20.
Expert Rev Anti Infect Ther ; 12(10): 1253-63, 2014 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-25169588

RESUMO

Filoviruses cause severe hemorrhagic fevers with case fatality rates of up to 90%, for which no antivirals are currently available. Their categorization as biosafety level 4 agents restricts work with infectious viruses to a few maximum containment laboratories worldwide, which constitutes a significant obstacle for the development of countermeasures. Reverse genetics facilitates the generation of recombinant filoviruses, including reporter-expressing viruses, which have been increasingly used for drug screening and development in recent years. Further, reverse-genetics based lifecycle modeling systems allow modeling of the filovirus lifecycle without the need for a maximum containment laboratory and have recently been optimized for use in high-throughput assays. The availability of these reverse genetics-based tools will significantly improve our ability to find novel antivirals against filoviruses.


Assuntos
Antivirais/farmacologia , Infecções por Filoviridae/tratamento farmacológico , Filoviridae/genética , Modelos Teóricos , Genética Reversa/métodos , Antivirais/uso terapêutico , Descoberta de Drogas , Avaliação Pré-Clínica de Medicamentos , Ebolavirus/efeitos dos fármacos , Ebolavirus/genética , Ebolavirus/fisiologia , Filoviridae/efeitos dos fármacos , Filoviridae/fisiologia , Genoma Viral , Humanos , Testes de Sensibilidade Microbiana , Replicação Viral
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