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1.
Tuberculosis (Edinb) ; 108: 106-113, 2018 01.
Artigo em Inglês | MEDLINE | ID: mdl-29523309

RESUMO

Tuberculosis remains a major health problem accentuated by the rise of resistance to all available drugs. Therefore, this study was launched to discover a novel antituberculosis agent from wild Egyptian Sahara plants. Twelve such plants were screened, in vitro, for their activity against various Mycobacterium species. The most active plant, Euphorbia paralias, was further fractionated with different organic solvents, and the activity of the obtained fractions was determined by the agar diffusion and broth microdilution methods. The methanol fraction was the most active against Mycobacterium spp., and was non-toxic in doses up to 10 g/kg of animal weight. Its main component was separated by column chromatography, and then identified by ultraviolet spectroscopy and nuclear magnetic resonance analysis as quercetin-3-O-ß-D-glucoside. Docking analysis suggested that quercetin-3-O-ß-D-glucoside inhibits the glutamine synthetase enzyme, a promising target for the development of antituberculosis drugs. This prediction was confirmed by an in vitro glutamine synthetase biosynthetic assay. To the best of our knowledge, and based on bioinformatics mining of the BioPhytMol database, this is the first report on the antimycobacterial activity of Euphorbia paralias plant. It is also the first report on the inhibition of mycobacterial glutamine synthetase by the flavonoid quercetin.


Assuntos
Antituberculosos/farmacologia , Proteínas de Bactérias/antagonistas & inibidores , Inibidores Enzimáticos/farmacologia , Euphorbia , Glucosídeos/farmacologia , Glutamato-Amônia Ligase/antagonistas & inibidores , Mycobacterium/efeitos dos fármacos , Quercetina/análogos & derivados , Antituberculosos/química , Antituberculosos/isolamento & purificação , Proteínas de Bactérias/química , Proteínas de Bactérias/metabolismo , Egito , Inibidores Enzimáticos/química , Inibidores Enzimáticos/isolamento & purificação , Euphorbia/química , Glucosídeos/química , Glucosídeos/isolamento & purificação , Glutamato-Amônia Ligase/química , Glutamato-Amônia Ligase/metabolismo , Espectroscopia de Ressonância Magnética , Metanol/química , Testes de Sensibilidade Microbiana , Simulação de Acoplamento Molecular , Mycobacterium/enzimologia , Fitoterapia , Plantas Medicinais , Conformação Proteica , Quercetina/química , Quercetina/isolamento & purificação , Quercetina/farmacologia , Solventes/química , Espectrofotometria Ultravioleta , Relação Estrutura-Atividade
2.
J Microbiol ; 55(1): 31-36, 2017 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-28035599

RESUMO

Carbon monoxide dehydrogenase (CO-DH) in Mycobacterium sp. strain JC1 is a key enzyme for the carboxydotrophic growth, when carbon monoxide (CO) is supplied as a sole source of carbon and energy. This enzyme is also known to act as nitric oxide dehydrogenase (NO-DH) for the detoxification of NO. Several accessory genes such as cutD, cutE, cutF, cutG, cutH, and cutI, are clustered together with two copies of the CO-DH structural genes (cutB1C1A1 and cutB2C2A2) in Mycobacterium sp. strain JC1 and are well conserved in carboxydotrophic mycobacteria. Transcription of the CO-DH structural and accessory genes was demonstrated to be increased significantly by acidified sodium nitrate as a source of NO. A cutI deletion (ΔcutI) mutant of Mycobacterium sp. strain JC1 was generated to identity the function of CutI. Lithoautotrophic growth of the ΔcutI mutant was severely affected in mineral medium supplemented with CO, while the mutant grew normally with glucose. Western blotting, CO-DH activity staining, and CO-DH-specific enzyme assay revealed a significant decrease in the cellular level of CO-DH in the ΔcutI mutant. Northern blot analysis and promoter assay showed that expression of the cutB1 and cutB2 genes was significantly reduced at the transcriptional level in the ΔcutI mutant, compared to that of the wildtype strain. The ΔcutI mutant was much more susceptible to NO than was the wild type.


Assuntos
Aldeído Oxirredutases/genética , Proteínas de Bactérias/genética , Genes Bacterianos , Complexos Multienzimáticos/genética , Mycobacterium/genética , Transcrição Gênica , Aldeído Oxirredutases/química , Aldeído Oxirredutases/metabolismo , Proteínas de Bactérias/química , Monóxido de Carbono/metabolismo , Clonagem Molecular , Meios de Cultura , Deleção de Genes , Glucose/metabolismo , Complexos Multienzimáticos/química , Complexos Multienzimáticos/metabolismo , Mycobacterium/efeitos dos fármacos , Mycobacterium/enzimologia , Mycobacterium/crescimento & desenvolvimento , Nitratos/metabolismo , Óxido Nítrico/metabolismo , Óxido Nítrico/farmacologia
3.
mBio ; 6(3): e00253-15, 2015 May 05.
Artigo em Inglês | MEDLINE | ID: mdl-25944857

RESUMO

UNLABELLED: A novel type of antibacterial screening method, a target mechanism-based whole-cell screening method, was developed to combine the advantages of target mechanism- and whole-cell-based approaches. A mycobacterial reporter strain with a synthetic phenotype for caseinolytic protease (ClpP1P2) activity was engineered, allowing the detection of inhibitors of this enzyme inside intact bacilli. A high-throughput screening method identified bortezomib, a human 26S proteasome drug, as a potent inhibitor of ClpP1P2 activity and bacterial growth. A battery of secondary assays was employed to demonstrate that bortezomib indeed exerts its antimicrobial activity via inhibition of ClpP1P2: Down- or upmodulation of the intracellular protease level resulted in hyper- or hyposensitivity of the bacteria, the drug showed specific potentiation of translation error-inducing aminoglycosides, ClpP1P2-specific substrate WhiB1 accumulated upon exposure, and growth inhibition potencies of bortezomib derivatives correlated with ClpP1P2 inhibition potencies. Furthermore, molecular modeling showed that the drug can bind to the catalytic sites of ClpP1P2. This work demonstrates the feasibility of target mechanism-based whole-cell screening, provides chemical validation of ClpP1P2 as a target, and identifies a drug in clinical use as a new lead compound for tuberculosis therapy. IMPORTANCE: During the last decade, antibacterial drug discovery relied on biochemical assays, rather than whole-cell approaches, to identify molecules that interact with purified target proteins derived by genomics. This approach failed to deliver antibacterial compounds with whole-cell activity, either because of cell permeability issues that medicinal chemistry cannot easily fix or because genomic data of essentiality insufficiently predicted the vulnerability of the target identified. As a consequence, the field largely moved back to a whole-cell approach whose main limitation is its black-box nature, i.e., that it requires trial-and-error chemistry because the cellular target is unknown. We developed a novel type of antibacterial screening method, target mechanism-based whole-cell screening, to combine the advantages of both approaches. We engineered a mycobacterial reporter strain with a synthetic phenotype allowing us to identify inhibitors of the caseinolytic protease (ClpP1P2) inside the cell. This approach identified bortezomib, an anticancer drug, as a specific inhibitor of ClpP1P2. We further confirmed the specific "on-target" activity of bortezomib by independent approaches including, but not limited to, genetic manipulation of the target level (over- and underexpressing strains) and by establishing a dynamic structure-activity relationship between ClpP1P2 and growth inhibition. Identifying an "on-target" compound is critical to optimize the efficacy of the compound without compromising its specificity. This work demonstrates the feasibility of target mechanism-based whole-cell screening methods, validates ClpP1P2 as a druggable target, and delivers a lead compound for tuberculosis therapy.


Assuntos
Antituberculosos/isolamento & purificação , Bortezomib/isolamento & purificação , Mycobacterium/efeitos dos fármacos , Mycobacterium/enzimologia , Inibidores de Proteases/isolamento & purificação , Serina Endopeptidases/metabolismo , Antituberculosos/farmacologia , Bortezomib/farmacologia , Domínio Catalítico , Avaliação Pré-Clínica de Medicamentos/métodos , Reposicionamento de Medicamentos , Ensaios de Triagem em Larga Escala , Simulação de Dinâmica Molecular , Inibidores de Proteases/farmacologia , Ligação Proteica , Conformação Proteica , Serina Endopeptidases/química
4.
Int J Mycobacteriol ; 4(3): 207-16, 2015 09.
Artigo em Inglês | MEDLINE | ID: mdl-27649868

RESUMO

Mycobacterium aurum (M. aurum) is an environmental mycobacteria that has previously been used in studies of anti-mycobacterial drugs due to its fast growth rate and low pathogenicity. The M. aurum genome has been sequenced and assembled into 46 contigs, with a total length of 6.02Mb containing 5684 annotated protein-coding genes. A phylogenetic analysis using whole genome alignments positioned M. aurum close to Mycobacterium vaccae and Mycobacterium vanbaalenii, within a clade related to fast-growing mycobacteria. Large-scale genomic rearrangements were identified by comparing the M. aurum genome to those of Mycobacterium tuberculosis and Mycobacterium leprae. M. aurum orthologous genes implicated in resistance to anti-tuberculosis drugs in M. tuberculosis were observed. The sequence identity at the DNA level varied from 68.6% for pncA (pyrazinamide drug-related) to 96.2% for rrs (streptomycin, capreomycin). We observed two homologous genes encoding the catalase-peroxidase enzyme (katG) that is associated with resistance to isoniazid. Similarly, two embB homologues were identified in the M. aurum genome. In addition to describing for the first time the genome of M. aurum, this work provides a resource to aid the use of M. aurum in studies to develop improved drugs for the pathogenic mycobacteria M. tuberculosis and M. leprae.


Assuntos
Antituberculosos/farmacologia , Genoma Bacteriano/genética , Mycobacterium leprae/efeitos dos fármacos , Mycobacterium tuberculosis/efeitos dos fármacos , Mycobacterium/genética , Proteínas de Bactérias/metabolismo , Desenho de Fármacos , Avaliação Pré-Clínica de Medicamentos , Resistência Microbiana a Medicamentos/efeitos dos fármacos , Resistência Microbiana a Medicamentos/genética , Testes de Sensibilidade Microbiana , Mycobacterium/efeitos dos fármacos , Mycobacterium/enzimologia , Mycobacterium/metabolismo , Pentosiltransferases/metabolismo , Peroxidases/metabolismo , Filogenia
5.
Eur J Med Chem ; 60: 333-9, 2013 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-23314046

RESUMO

The increasing prevalence of drug-resistant tuberculosis, which is resistant to effective multiple antibiotic, presents a major global health threat. The thymidine monophosphate kinase (TMPK) of Mycobacterium tuberculosis (M. tuberculosis), which is an essential enzyme for the maintenance of the thymidine triphosphate pools, is considered an attractive target for the development of effective antibiotics against tuberculosis. In this study, we attempted to identify novel chemical compounds that specifically target the M. tuberculosis TMPK (mtTMPK). We performed in silico structure-based drug screening using the crystal structure data of mtTMPK and a large-scale virtual compound library, which is composed of 6,192,930 chemicals. Through a three-step screening method using the DOCK and GOLD, we identified ten chemical compounds that were predicted to have high binding affinity to the active site cleft of the mtTMPK. We then evaluated the antibiotic effects of these chemical compounds on model mycobacteria strains. As a result, we found that a chemical compound, K10, completely inhibited the growth of Mycobacterium vanbaalenii (M. vanbaalenii) and Mycobacterium smegmatis (M. smegmatis). Moreover, K10 does not exhibit any toxic effects on the growth of enterobacteria and mammalian cells. The structural and experimental information regarding this novel chemical compound, K10, is likely to be useful for the hit-to-lead optimization of new antibiotics for the treatment of tuberculosis.


Assuntos
Antibacterianos/farmacologia , Inibidores Enzimáticos/farmacologia , Mycobacterium/efeitos dos fármacos , Núcleosídeo-Fosfato Quinase/antagonistas & inibidores , Bibliotecas de Moléculas Pequenas/farmacologia , Animais , Antibacterianos/síntese química , Antibacterianos/química , Linhagem Celular , Cães , Relação Dose-Resposta a Droga , Avaliação Pré-Clínica de Medicamentos , Inibidores Enzimáticos/síntese química , Inibidores Enzimáticos/química , Humanos , Células Madin Darby de Rim Canino , Testes de Sensibilidade Microbiana , Modelos Moleculares , Conformação Molecular , Mycobacterium/enzimologia , Mycobacterium/crescimento & desenvolvimento , Núcleosídeo-Fosfato Quinase/metabolismo , Bibliotecas de Moléculas Pequenas/síntese química , Bibliotecas de Moléculas Pequenas/química , Relação Estrutura-Atividade
6.
Eur J Med Chem ; 46(5): 1849-56, 2011 May.
Artigo em Inglês | MEDLINE | ID: mdl-21397998

RESUMO

The enoyl-acyl carrier protein reductase of Mycobacterium tuberculosis (MTB) is a key enzyme of the type II fatty acid synthesis system. It is involved in the production of mycolic acid and is a known target for isoniazid, an effective antibiotic for tuberculosis treatment. The increasing prevalence of tuberculosis in many areas of the world, which is associated with the rise of drug-resistant MTB strains, presents a major global health threat. In this study, we attempted to identify novel antibiotics specifically targeting the MTB enoyl-acyl carrier protein reductase. We performed in silico structure-based drug screening using the crystal structure data for the MTB enoyl-acyl carrier protein reductase (PDB code; 2H7I) and a virtual compound library, which includes 152,102 chemicals. By a two-step screening method using DOCK (first screening) and GOLD (second screening), we identified 5 chemical compounds expected to have high binding affinity to the active center of the MTB enoyl-acyl carrier protein reductase. Moreover, we examined the antibiotic effects of these chemical compounds on model bacterial strains by in vitro experiments. We found that a chemical compound, which has a basic skeleton comprised of dibenzofuran, acetoamide, trizol, furyl and methylphenyl groups, completely inhibited the growth of Mycobacterium vanbaalenii and had no toxic effects on enterobacteria and cultured mammalian cells. Therefore, the chemical compound is likely to be useful in the research and development of new antibiotics for tuberculosis.


Assuntos
Antibacterianos/farmacologia , Tuberculose/tratamento farmacológico , Animais , Antibacterianos/química , Linhagem Celular , Sobrevivência Celular/efeitos dos fármacos , Cães , Avaliação Pré-Clínica de Medicamentos , Enoil-(Proteína de Transporte de Acila) Redutase (NADH)/antagonistas & inibidores , Enoil-(Proteína de Transporte de Acila) Redutase (NADH)/metabolismo , Humanos , Modelos Moleculares , Estrutura Molecular , Mycobacterium/efeitos dos fármacos , Mycobacterium/enzimologia , Mycobacterium/crescimento & desenvolvimento , Rhodococcus/efeitos dos fármacos , Rhodococcus/crescimento & desenvolvimento , Bibliotecas de Moléculas Pequenas , Estereoisomerismo , Relação Estrutura-Atividade
7.
J Agric Food Chem ; 59(7): 2876-82, 2011 Apr 13.
Artigo em Inglês | MEDLINE | ID: mdl-20961044

RESUMO

Mycobacterium aromativorans JS19b1(T) was isolated from a petroleum-contaminated site that was acclimated almost 100 years. In the present study, metabolism of several polycyclic aromatic hydrocarbons (PAHs) and structural analogues in JS19b1(T) was studied. The proteomic profiles were compared when JS19b1(T) was cultured in nutrient broth and glucose-, phenanthrene-, and phthalate-supplemented mineral media. Proteomic analysis showed notable characteristics of this species, for instance, the existence of enzymes for degradation of multiple classes of chemicals including biphenyl, phenanthrene, dibenzothiophene, and organophosphorus pesticides. Phenanthrene degradation enzymes were detected only in phenanthrene-fed cells, suggesting a very tight regulation of the enzymes. Detection of the other enzymes under various treatment conditions indicated that their regulation may be through very complex mechanisms. In comparison with common major metabolites, PAH transformations produced various types of potentially toxic intermediates, including epoxide, quinone, phenols, aldehydes, and phthalates. In a bioenergy production aspect, PAH transformation does not seem to provide substrates for glycolysis and pentose phosphate pathways. This study signifies the potential of protein profiling for studies of relatively uncharacterized bacteria for biodegradation of environmental pollutants.


Assuntos
Poluentes Ambientais/metabolismo , Mycobacterium/metabolismo , Hidrocarbonetos Policíclicos Aromáticos/metabolismo , Proteômica , Biodegradação Ambiental , Compostos de Bifenilo/metabolismo , Mycobacterium/efeitos dos fármacos , Mycobacterium/enzimologia , Petróleo , Fenantrenos/metabolismo
8.
Am J Respir Cell Mol Biol ; 44(2): 166-74, 2011 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-20348207

RESUMO

Sarcoidosis is characterized by noncaseating granulomas containing CD4(+) T cells with a Th1 immunophenotype. Although the causative antigens remain unknown, independent studies noted molecular and immunologic evidence of mycobacterial virulence factors in sarcoidosis specimens. A major limiting factor in discovering new insights into the pathogenesis of sarcoidosis is the lack of an animal model. Using a distinct superoxide dismutase A peptide (sodA) associated with sarcoidosis granulomas, we developed a pulmonary model of sarcoidosis granulomatous inflammation. Mice were sensitized by a subcutaneous injection of sodA, incorporated in incomplete Freund's adjuvant (IFA). Control subjects consisted of mice with no sensitization (ConNS), sensitized with IFA only (ConIFA), or with Schistosoma mansoni eggs. Fourteen days later, sensitized mice were challenged by tail-vein injection of naked beads, covalently coupled to sodA peptides or to schistosome egg antigens (SEA). Histologic analysis revealed hilar lymphadenopathy and noncaseating granulomas in the lungs of sodA-treated or SEA-treated mice. Flow cytometry of bronchoalveolar lavage (BAL) demonstrated CD4(+) T-cell responses against sodA peptide in the sodA-sensitized mice only. Cytometric bead analysis revealed significant differences in IL-2 and IFN-γ secretion in the BAL fluid of sodA-treated mice, compared with mice that received SEA or naked beads (P = 0.008, Wilcoxon rank sum test). ConNS and ConIFA mice demonstrated no significant formation of granuloma, and no Th1 immunophenotype. The use of microbial peptides distinct for sarcoidosis reveals a histologic and immunologic profile in the murine model that correlates well with those profiles noted in human sarcoidosis, providing the framework to investigate the molecular basis for the progression or resolution of sarcoidosis.


Assuntos
Proteínas de Bactérias/imunologia , Granuloma/etiologia , Mycobacterium/enzimologia , Mycobacterium/imunologia , Sarcoidose Pulmonar/etiologia , Superóxido Dismutase/imunologia , Sequência de Aminoácidos , Animais , Antígenos de Bactérias/genética , Proteínas de Bactérias/genética , Líquido da Lavagem Broncoalveolar/citologia , Líquido da Lavagem Broncoalveolar/imunologia , Modelos Animais de Doenças , Feminino , Granuloma/imunologia , Granuloma/patologia , Humanos , Camundongos , Camundongos Endogâmicos C57BL , Mycobacterium/genética , Fragmentos de Peptídeos/genética , Fragmentos de Peptídeos/imunologia , Sarcoidose Pulmonar/imunologia , Sarcoidose Pulmonar/patologia , Superóxido Dismutase/genética , Células Th1/imunologia
9.
J Biochem ; 147(4): 511-22, 2010 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-19933836

RESUMO

The gene encoding a catalase-peroxidase (KatG) was cloned from chromosomal DNA of a fast-growing Mycobacterium sp. strain JC1 DSM 3803. The nucleotide sequence of a 5.7 kb EcoRI fragment containing the katG and its flanking regions was determined. The fragment (5,706 bps) contained two complete open reading frames (ORFs) encoding putative ferric uptake regulator A (FurA) and KatG proteins. The cloned gene, katG, had an ORF of 2241 nt, encoding a protein with calculated molecular mass of 81,748 Da. The furA was located in the upstream of the katG with the same transcriptional direction and there was a 38 bp gap space between them. The deduced KatG and FurA protein sequences showed significant homologies to KatG2 and Fur2 of Mycobacterium smegmatis and clustered with other mycobacterial KatG and Fur-like proteins in phylogenetic trees, respectively. The recombinant KatG overproduced in Escherichia coli was nearly indistinguishable from the native JC1 catalase-peroxidase in enzymatic properties and also possessed the resistance to organic solvents, indicating that the cloned katG truly encodes the Mycobacterium sp. JC1 catalase-peroxidase. Difference spectroscopy revealed Mn(II) binding near the haem of the KatG. Transcript analysis of the furA-katG using RT-PCR suggests that the katG is independently transcribed from the furA.


Assuntos
Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Genes Bacterianos , Mycobacterium/genética , Peroxidases/genética , Peroxidases/metabolismo , Motivos de Aminoácidos , Sequência de Aminoácidos , Proteínas de Bactérias/química , Sítios de Ligação , Clonagem Molecular , DNA Complementar , Inibidores Enzimáticos , Estabilidade Enzimática , Expressão Gênica , Manganês/metabolismo , Dados de Sequência Molecular , Peso Molecular , Mycobacterium/enzimologia , Mycobacterium/crescimento & desenvolvimento , Mycobacterium smegmatis/genética , Peroxidases/química , Filogenia , Proteínas Recombinantes de Fusão/antagonistas & inibidores , Proteínas Recombinantes de Fusão/química , Proteínas Recombinantes de Fusão/isolamento & purificação , Proteínas Recombinantes de Fusão/metabolismo , Proteínas Repressoras/química , Proteínas Repressoras/genética , Alinhamento de Sequência , Análise de Sequência de DNA , Homologia de Sequência de Aminoácidos , Solventes
10.
Protein Expr Purif ; 62(2): 171-8, 2008 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-18765284

RESUMO

A wheat germ cell-free extract was used to perform in vitro translation of human stearoyl-CoA desaturase in the presence of unilamelar liposomes, and near complete transfer of the expressed integral membrane protein into the liposome was observed. Moreover, co-translation of the desaturase along with human cytochrome b(5) led to transfer of both membrane proteins into the liposomes. A simple, single step purification via centrifugation in a density gradient yielded proteoliposomes with the desaturase in high purity as judged by capillary electrophoresis. After in vitro reconstitution of the non-heme iron and heme active sites, the function of the reconstituted enzyme complex was demonstrated by conversion of stearoyl-CoA to oleoyl-CoA. This simple translation approach obviates the use of detergents or other lipids to stabilize and isolate a catalytically active integral membrane enzyme. The applicability of cell-free translation to the assembly and purification of other integral membrane protein complexes is discussed.


Assuntos
Biossíntese de Proteínas , Estearoil-CoA Dessaturase/biossíntese , Estearoil-CoA Dessaturase/isolamento & purificação , Triticum/metabolismo , Animais , Sequência de Bases , Catálise , Sistema Livre de Células/efeitos dos fármacos , Citocromos b5/metabolismo , Detergentes/farmacologia , Eletroforese Capilar , Vetores Genéticos/genética , Humanos , Isoenzimas/isolamento & purificação , Lipossomos/isolamento & purificação , Camundongos , Dados de Sequência Molecular , Mycobacterium/enzimologia , Extratos Vegetais/análise , Biossíntese de Proteínas/efeitos dos fármacos
11.
Bioorg Med Chem ; 15(10): 3579-86, 2007 May 15.
Artigo em Inglês | MEDLINE | ID: mdl-17368035

RESUMO

In this study, we show that extracts and a purified compound of Warburgia salutaris exhibit anti-mycobacterial activity against Mycobacterium tuberculosis H37Rv and Mycobacterium bovis BCG Pasteur. The extracts did not inhibit growth of Escherichia coli and were not toxic to cultured mammalian macrophage cells at the concentrations at which anti-mycobacterial activity was observed. The extract and pure compound inhibited pure recombinant arylamine N-acetyltransferase (NAT), an enzyme involved in mycobacterial cell wall lipid synthesis. Moreover, neither extract nor pure compound inhibited growth of a strain of M. bovis BCG in which nat has been deleted suggesting that NAT may indeed be a target within the mycobacterial cell. The purified compound is a novel drimane sesquiterpenoid lactone, 11alpha-hydroxycinnamosmolide. These studies show that W. salutaris is a useful source of anti-tubercular compounds for further analysis and supports the hypothesis of a link between NAT inhibition and anti-mycobacterial activity.


Assuntos
Antibacterianos/farmacologia , Arilamina N-Acetiltransferase/antagonistas & inibidores , Inibidores Enzimáticos/farmacologia , Mycobacterium/efeitos dos fármacos , Mycobacterium/enzimologia , Plantas Medicinais/química , Animais , Linhagem Celular , Sobrevivência Celular/efeitos dos fármacos , Cromatografia Líquida de Alta Pressão , Dimetil Sulfóxido/química , Macrófagos , Espectroscopia de Ressonância Magnética , Camundongos , Mycobacterium/ultraestrutura , Mycobacterium bovis/efeitos dos fármacos , Mycobacterium smegmatis/efeitos dos fármacos , Extratos Vegetais/farmacologia , Proteínas Recombinantes/química , Proteínas Recombinantes/farmacologia , Solventes , Espectrofotometria Ultravioleta
12.
J Appl Microbiol ; 101(6): 1259-68, 2006 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-17105556

RESUMO

AIMS: This study was developed to purify and to characterize a keratinolytic protease from the bacterium Microbacterium sp. strain kr10. METHODS AND RESULTS: Enzyme purification was carried out by sequential liquid chromatography on Sephadex G-100 and Q-Sepharose columns. The purification was about 255-fold, with a yield of 34%, as determined with azocasein as substrate. The molecular weight of the enzyme was estimated as 42,000 Da by SDS-PAGE. The enzyme had pH and temperature optima of 7.5 and 50 degrees C respectively. This keratinase was inhibited by EDTA and 1,10-phenanthroline, and analysis of metal content indicates that Zn(2+) and Mg(2+) are present. A 2(2) factorial design was developed to investigate the effect of keratinase and mercaptoacetate concentration on feather keratinolysis. Statistical analysis showed that both variables have a significant effect on hydrolysis of keratin. CONCLUSIONS: A new keratinase produced by Microbacterium sp. was purified and characterized. SIGNIFICANCE AND IMPACT OF THE STUDY: This keratinolytic enzyme offers an interesting potential for the hydrolysis of keratin wastes to be used as feed supplement or bioconversion to added-value products.


Assuntos
Plumas/microbiologia , Microbiologia Industrial , Mycobacterium/enzimologia , Peptídeo Hidrolases/isolamento & purificação , Animais , Cromatografia Líquida , Ácido Edético/farmacologia , Eletroforese em Gel de Poliacrilamida , Inibidores Enzimáticos/farmacologia , Plumas/metabolismo , Concentração de Íons de Hidrogênio , Queratinas/metabolismo , Magnésio/análise , Peso Molecular , Peptídeo Hidrolases/química , Peptídeo Hidrolases/farmacologia , Fenantrolinas/farmacologia , Temperatura , Tioglicolatos/farmacologia , Zinco/análise
13.
BMC Genomics ; 6: 129, 2005 Sep 19.
Artigo em Inglês | MEDLINE | ID: mdl-16171520

RESUMO

BACKGROUND: Ser/Thr/Tyr kinases (STYKs) commonly found in eukaryotes have been recently reported in many bacterial species. Recent studies elucidating their cellular functions have established their roles in bacterial growth and development. However functions of a large number of bacterial STYKs still remain elusive. The organisation of domains in a large dataset of bacterial STYKs has been investigated here in order to recognise variety in domain combinations which determine functions of bacterial STYKs. RESULTS: Using sensitive sequence and profile search methods, domain organisation of over 600 STYKs from 125 prokaryotic genomes have been examined. Kinase catalytic domains of STYKs tethered to a wide range of enzymatic domains such as phosphatases, HSP70, peptidyl prolyl isomerases, pectin esterases and glycoproteases have been identified. Such distinct preferences for domain combinations are not known to be present in either the Histidine kinase or the eukaryotic STYK families. Domain organisation of STYKs specific to certain groups of bacteria has also been noted in the current anlaysis. For example, Hydrophobin like domains in Mycobacterial STYK and penicillin binding domains in few STYKs of Gram-positive organisms and FHA domains in cyanobacterial STYKs. Homologues of characterised substrates of prokaryotic STYKs have also been identified. CONCLUSION: The domains and domain architectures of most of the bacterial STYKs identified are very different from the known domain organisation in STYKs of eukaryotes. This observation highlights distinct biological roles of bacterial STYKs compared to eukaryotic STYKs. Bacterial STYKs reveal high diversity in domain organisation. Some of the modular organisations conserved across diverse bacterial species suggests their central role in bacterial physiology. Unique domain architectures of few other groups of STYKs reveal recruitment of functions specific to the species.


Assuntos
Proteínas Serina-Treonina Quinases/química , Sequência de Aminoácidos , Domínio Catalítico , Divisão Celular , Genoma , Genoma Bacteriano , Proteínas de Choque Térmico HSP70/química , Histidina Quinase , Isomerases/química , Dados de Sequência Molecular , Mycobacterium/enzimologia , Nitratos/química , Pectinas/química , Penicilinas/química , Monoéster Fosfórico Hidrolases/química , Fosforilação , Células Procarióticas , Ligação Proteica , Proteínas Quinases/química , Estrutura Terciária de Proteína , Homologia de Sequência de Aminoácidos , Ubiquinona/química
14.
Appl Environ Microbiol ; 71(4): 1737-44, 2005 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-15811996

RESUMO

A number of oxygenated monoterpenes present at low concentrations in plant oils have anticarcinogenic properties. One of the most promising compounds in this respect is (-)-perillyl alcohol. Since this natural product is present only at low levels in a few plant oils, an alternative, synthetic source is desirable. Screening of 1,800 bacterial strains showed that many alkane degraders were able to specifically hydroxylate l-limonene in the 7 position to produce enantiopure (-)-perillyl alcohol. The oxygenase responsible for this was purified from the best-performing wild-type strain, Mycobacterium sp. strain HXN-1500. By using N-terminal sequence information, a 6.2-kb ApaI fragment was cloned, which encoded a cytochrome P450, a ferredoxin, and a ferredoxin reductase. The three genes were successfully coexpressed in Pseudomonas putida by using the broad-host-range vector pCom8, and the recombinant converted limonene to perillyl alcohol with a specific activity of 3 U/g (dry weight) of cells. The construct was subsequently used in a 2-liter bioreactor to produce perillyl alcohol on a scale of several grams.


Assuntos
Citocromo P-450 CYP4A/genética , Citocromo P-450 CYP4A/metabolismo , Monoterpenos/metabolismo , Mycobacterium/enzimologia , Pseudomonas putida/enzimologia , Pseudomonas putida/genética , Terpenos/metabolismo , Sequência de Aminoácidos , Cicloexenos , Sistema Enzimático do Citocromo P-450/genética , Sistema Enzimático do Citocromo P-450/metabolismo , Microbiologia Industrial/métodos , Limoneno , Dados de Sequência Molecular , Mycobacterium/genética , Pseudomonas putida/crescimento & desenvolvimento , Análise de Sequência de DNA
15.
Bioorg Med Chem ; 9(12): 3129-43, 2001 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-11711288

RESUMO

The emergence of multi-drug resistant (MDR) strains of Mycobacterium tuberculosis (MTB) and the continuing pandemic of tuberculosis emphasizes the urgent need for the development of new anti-tubercular agents with novel drug targets. The recent structural elucidation of the mycobacterial cell wall highlights a large variety of structurally unique components that may be a basis for new drug development. This publication describes the synthesis, characterization, and screening of several octyl Galf(beta,1-->5)Galf and octyl Galf(beta,1-->6)Galf derivatives. A cell-free assay system has been utilized for galactosyltransferase activity using UDP[14C]Galf as the glycosyl donor, and in vitro inhibitory activity has been determined in a colorimetric broth microdilution assay system against MTB H37Ra and three clinical isolates of Mycobacterium avium complex (MAC). Certain derivatives showed moderate activities against MTB and MAC. The biological evaluation of these disaccharides suggests that more hydrophobic analogues with a blocked reducing end showed better activity as compared to totally deprotected disaccharides that more closely resemble the natural substrates in cell wall biosynthesis.


Assuntos
Dissacarídeos/química , Dissacarídeos/metabolismo , Galactosiltransferases/metabolismo , Mycobacterium/enzimologia , Antituberculosos/química , Antituberculosos/metabolismo , Antituberculosos/farmacologia , Bioquímica/métodos , Configuração de Carboidratos , Dissacarídeos/farmacologia , Avaliação Pré-Clínica de Medicamentos , Concentração Inibidora 50 , Mycobacterium/efeitos dos fármacos , Relação Estrutura-Atividade
16.
J Mol Biol ; 312(2): 347-57, 2001 Sep 14.
Artigo em Inglês | MEDLINE | ID: mdl-11554791

RESUMO

We have investigated interaction of Mycobacterium smegmatis topoisomerase I at its specific recognition sequence. DNase I footprinting demonstrates a large region of protection on both the scissile and non-scissile strands of DNA. Methylation protection and interference analyses reveal base-specific contacts within the recognition sequence. Missing contact analyses reveal additional interactions with the residues in both single and double-stranded DNA, and hence underline the role for the functional groups associated with those bases. These interactions are supplemented by phosphate contacts in the scissile strand. Conformation specific probes reveal protein-induced structural distortion of the DNA helix at the T-A-T-A sequence 11 bp upstream to the recognition sequence. Based on these footprinting analyses that define parameters of topoisomerase I-DNA interactions, a model of topoisomerase I binding to its substrate is presented. Within the large protected region of 30 bp, the enzyme makes direct contact at two locations in the scissile strand, one around the cleavage site and the other 8-12 bases upstream. Thus the enzyme makes asymmetric recognition of DNA and could carry out DNA relaxation by either of the two proposed mechanisms: enzyme bridged and restricted rotation.


Assuntos
DNA Topoisomerases Tipo I/metabolismo , Proteínas de Ligação a DNA/metabolismo , DNA/metabolismo , Mycobacterium/enzimologia , Sequência de Bases , Sítios de Ligação , DNA/química , DNA/genética , Pegada de DNA , Metilação de DNA , Desoxirribonuclease I/metabolismo , Modelos Moleculares , Conformação de Ácido Nucleico , Fosfatos/metabolismo , Permanganato de Potássio/metabolismo , Ligação Proteica , Rotação , Eletricidade Estática , Especificidade por Substrato , Ésteres do Ácido Sulfúrico/metabolismo
17.
Biochem Biophys Res Commun ; 240(3): 536-9, 1997 Nov 26.
Artigo em Inglês | MEDLINE | ID: mdl-9398599

RESUMO

Mycobacterium aurum is considered a surrogate of M. tuberculosis and recently has been proposed as test organism in high throughput screening of antituberculosis drugs (3). In this investigation, we suggest use of a recombinant M. aurum expressing E. coli lacZ gene, in which beta-galactosidase production is the reporter system as recently reported by us (6). The assay is based on production of beta-galactosidase in presence of drugs during growth. Enzyme production was inhibited within 4 h by frontline antimycobacterial drugs like streptomycin, rifampicin, isoniazid, ethambutol, ofloxacin, and sparfloxacin at their MICs. The assay could be performed conveniently in 96-well microtiter plate format.


Assuntos
Antituberculosos/farmacologia , Escherichia coli/genética , Fluoroquinolonas , Testes de Sensibilidade Microbiana/métodos , Mycobacterium/efeitos dos fármacos , Mycobacterium/genética , beta-Galactosidase/biossíntese , DNA Recombinante , Avaliação Pré-Clínica de Medicamentos/métodos , Óperon Lac/genética , Mycobacterium/enzimologia , Mycobacterium/crescimento & desenvolvimento , Quinolonas/farmacologia , Proteínas Recombinantes , beta-Galactosidase/genética
19.
Proc Natl Acad Sci U S A ; 93(2): 709-13, 1996 Jan 23.
Artigo em Inglês | MEDLINE | ID: mdl-8570621

RESUMO

Strains of Mycobacterium smegmatis, a mycobacterium which shares genetic sequences, grows more rapidly, and is nonpathogenic in man as compared with Mycobacterium tuberculosis, were utilized for the initial development of new antimycobacterial therapy. Drug-resistant strains of M. smegmatis which are known to arise in a manner identical to the emergence of drug-resistant strains of M. tuberculosis were isolated and utilized as models for the antimycobacterial activities of modified and unmodified oligodeoxynucleotide phosphorothioates in broth cultures. Under normal conditions, oligodeoxynucleotide phosphorothioates do not enter mycobacteria, and several strategies were successfully utilized to afford entry of oligonucleotides into the mycobacterial cells. One involved the presence of very low levels of ethambutol, which enables the entry of oligonucleotides into mycobacteria because of its induced alterations in the cell wall, and another involved the utilization of oligonucleotides covalently attached to a D-cycloserine molecule, whereby entry into the mycobacterial cell is achieved by a receptor-mediated process. Another low molecular weight, covalently attached ligand that enabled the entry and subsequent antimycobacterial activities of oligodeoxynucleotide phosphorothioates in the absence of a cell wall modifying reagent was biotin. Significant sequence-specific growth inhibition of wild-type, as well as of drug-resistant, M. smegmatis was obtained by modified oligonucleotides complementary in sequence to a specific region of the mycobacterium aspartokinase (ask) gene when utilized in combinations with ethambutol (as compared to ethambutol alone) or as D-cycloserine or biotin covalent adducts without the presence of any other cytotoxic or cytostatic agent.


Assuntos
Antituberculosos/farmacologia , Mycobacterium/efeitos dos fármacos , Oligodesoxirribonucleotídeos/farmacologia , Oligonucleotídeos Antissenso/farmacologia , Tionucleotídeos/farmacologia , Aspartato Quinase/genética , Sequência de Bases , Transporte Biológico/efeitos dos fármacos , Ciclosserina/análogos & derivados , Relação Dose-Resposta a Droga , Resistência Microbiana a Medicamentos , Etambutol/farmacologia , Testes de Sensibilidade Microbiana , Dados de Sequência Molecular , Mycobacterium/enzimologia , Oligodesoxirribonucleotídeos/química , Oligonucleotídeos Antissenso/química , Tionucleotídeos/química
20.
Clin Ther ; 11(6): 775-85, 1989.
Artigo em Inglês | MEDLINE | ID: mdl-2611821

RESUMO

In 1987 and 1988, 16 patients in a cardiothoracic hospital developed median sternotomy wound infections from Mycobacterium fortuitum or Mycobacterium chelonei (M fortuitum, 14 patients; M chelonei, two patients). For M fortuitum isolates, the minimum inhibitory concentration (MIC) (by agar dilution) of ofloxacin was 0.32 to 1.25 mg/L; of amikacin, 0.5 to 1 mg/L; of sulfadiazine, 16 to 256 mg/L; of imipenem, less than or equal to 2 to 4 mg/L; of cefoxitin, 4 to 16 mg/L; of ampicillin, 64 to greater than 256 mg/L; of cephapirin, 64 to 128 mg/L; of cefoperazone, greater than 256 mg/L; and of ceftazidime, greater than 256 mg/L. Addition of sulbactam to ampicillin and cefoperazone resulted in at least a four- to eight-fold reduction of their respective MICs. For M chelonei isolates, the MIC of ofloxacin was greater than 20 mg/L; of amikacin, 8 mg/L; of sulfadiazine, 64 mg/L; of imipenem, 8 mg/L; of cefoxitin, 16 mg/L; of ampicillin, 128 mg/L; of cephapirin, 128 mg/L; of cefoperazone, greater than 256 mg/L; and of ceftazidime, greater than 256 mg/L. Addition of sulbactam resulted in much smaller reductions of the MICs of ampicillin and cefoperazone. Synergism was noticed between ofloxacin and amikacin against M chelonei but not against M fortuitum. The results indicate that ofloxacin alone is as effective as the combination of ofloxacin and amikacin in treating M fortuitum, but not M chelonei, infection.


Assuntos
Infecções por Mycobacterium/tratamento farmacológico , Ofloxacino/uso terapêutico , Infecção da Ferida Cirúrgica/tratamento farmacológico , Amicacina/farmacologia , Amicacina/uso terapêutico , Humanos , Testes de Sensibilidade Microbiana , Mycobacterium/efeitos dos fármacos , Mycobacterium/enzimologia , Infecções por Mycobacterium/microbiologia , Ofloxacino/farmacologia , Infecção da Ferida Cirúrgica/microbiologia , beta-Lactamases/metabolismo
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