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2.
Biochem Biophys Res Commun ; 590: 145-151, 2022 01 29.
Artículo en Inglés | MEDLINE | ID: mdl-34974303

RESUMEN

Malaria identifies as a tropical hallmark, conforming to the burgeoning notion of escalating drug resistance among virulent strains, with the burdensome Plasmodium falciparum under its wing. The cysteine protease Falcipain-2 (FP2) is released in the parasite's food vacuole in the trophozoite stage and contributes to disease progression through its hemoglobinase activity. In the present study, we have determined the crystal structure of FP2 from a drug resistant P. falciparum 3D7 strain. FP2-3D7 sequence has detected four amino acid variants, R12K, E14 N, P100T and G102D, in the mature domain of the protease, when compared with other reported structures. FP2-3D7 protease has been crystallized in the presence of two inhibitors E-64 and Iodoacetamide, which diffracted up to 3.5 Å and 3.4 Å respectively. Structural analyses of the mature domain helped unveil two solvent-exposed pockets with bound ligands where one is structurally homologous to the allosteric binding site of human Cathepsin-K and thus, could be exploited for designing allosteric modifiers of FP2. The structure has also revealed (poly)ethylene glycol molecules along the catalytic cleft, providing interesting insights for exploring FP2 as a chemotherapeutic target and for PEGylation in drug delivery. The side-chains of P2 and P3 residues of E-64 also adopt different rotamer conformations, compared with previously reported structure, emphasizing strain-specific multiple binding-modes of active-site targeted inhibitors. Docking studies, along with normal mode analyses, highlight the mode of hemoglobin binding and the active/inactive switch in hemoglobinase activity, conjecturing the formation of a stable dimeric state with a symmetry related copy in crystal packing.


Asunto(s)
Cisteína Endopeptidasas/química , Plasmodium falciparum/enzimología , Sitio Alostérico , Aminoácidos/genética , Dominio Catalítico , Cistatinas , Cisteína Endopeptidasas/metabolismo , Etilenos/química , Hemoglobinas/metabolismo , Ligandos , Modelos Moleculares , Polietilenglicoles/química , Polimorfismo de Nucleótido Simple/genética , Dominios Proteicos , Proteolisis , Solventes , Especificidad por Sustrato
3.
Biochim Biophys Acta Proteins Proteom ; 1867(9): 854-865, 2019 09.
Artículo en Inglés | MEDLINE | ID: mdl-31247344

RESUMEN

Falcipain-2(FP2), a cysteine protease from Plasmodium falciparum, cleaves host erythrocyte hemoglobin and specific membrane skeleton components during the parasite life cycle. Therefore its inhibition has been considered as an attractive approach to combat the disease. SerpinB3 (SPB3) belongs to the ovalbumin-serpin family and is a potent cross-class inhibitor of cysteine cathepsins L, K, S and papain. This study explored the possibility of inhibition of FP2 by SPB3. It turned out that general proteolytic activities as well as specific hemoglobinolytic activity of FP2 have been inhibited by SPB3. Furthermore, studies have been designed to investigate and characterize the mechanism of inhibition in comparison with proteases Cathepsin L (CTSL) and papain. The Ki value of inhibition for FP2, measured against its specific substrate (VLK-pNA), is 338.11 nM and stoichiometry (I/E ratio) of inhibition is 1. These values are comparable to CTSL and papain. Analytical gel filtration profile and CD spectroscopy data confirm FP2-SPB3 complex formation. Our studies revealed that interaction of SPB3 with FP2 is non-covalent type like that of CTSL and papain but unlike other serine protease-inhibiting serpins. An in-silico docking and simulation study have been performed with FP2 as well as CTSL and results suggest different binding mode for FP2 and CTSL, though both the complexes are stable with significant contribution from electrostatic energy of interaction. We further showed a disease state mutant SPB3-Gly351Ala performed better anti-protease activity against FP2. This study, for the first time, has shown a serpin family inhibitor from human could efficiently inhibit activity of FP2.


Asunto(s)
Antígenos de Neoplasias/química , Cisteína Endopeptidasas/química , Simulación del Acoplamiento Molecular , Plasmodium falciparum/enzimología , Serpinas/química , Antígenos de Neoplasias/genética , Antígenos de Neoplasias/metabolismo , Catepsina L/antagonistas & inhibidores , Catepsina L/química , Catepsina L/genética , Catepsina L/metabolismo , Cisteína Endopeptidasas/genética , Cisteína Endopeptidasas/metabolismo , Humanos , Papaína/antagonistas & inhibidores , Papaína/química , Papaína/genética , Papaína/metabolismo , Plasmodium falciparum/genética , Serpinas/genética , Serpinas/metabolismo
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