Your browser doesn't support javascript.
loading
Mostrar: 20 | 50 | 100
Resultados 1 - 20 de 56
Filtrar
1.
Artículo en Inglés | MEDLINE | ID: mdl-19342770

RESUMEN

Phytate (myo-inositol hexakisphosphate) is the primary storage form of phosphate in seeds and legumes (Reddy et al., 1982). Phytases are phosphatases that hydrolyze phytate to less phosphorylated myo-inositol derivatives and inorganic phosphate. The crystal structure of phytase from Debaryomyces castellii has been determined at 2.3 A resolution. The crystals belonged to space group P6(5)22, with unit-cell parameters a = 121.65, c = 332.24 A. The structure was solved by molecular replacement and refined to a final R factor of 15.7% (R(free) = 20.9%). The final model consists of a dimer (with two monomers of 458 residues), five NAG molecules and 628 water molecules.


Asunto(s)
6-Fitasa/química , Saccharomycetales/enzimología , Fosfatasa Ácida/química , Secuencia de Aminoácidos , Cristalografía por Rayos X , Hidrólisis , Modelos Moleculares , Datos de Secuencia Molecular , Ácido Fítico/química , Estructura Secundaria de Proteína , Alineación de Secuencia
2.
J Appl Microbiol ; 106(5): 1640-8, 2009 May.
Artículo en Inglés | MEDLINE | ID: mdl-19226399

RESUMEN

AIMS: Production of the recombinant Arabidopsis halleri defensin AhPDF1.1 in a native-like form. METHODS AND RESULTS: Mature AhPDF1.1 cDNA was cloned into pET-28-a(+) and expressed in Escherichia coli Rosetta. After a denaturing extraction, purification by metal affinity chromatography and CNBr cleavage of the His-tag, a protein without extra amino acids at the N-terminus was obtained. An oxidative folding step was then required to renature the protein that was then purified to homogeneity by a C18 HPLC separation. Mass spectroscopy and circular dichroism analyses showed that the recombinant AhPDF1.1 has the expected molecular mass and 3D-structure features of a folded defensin with four-disulfide bridges. The recombinant protein is active against the filamentous fungus Fusarium oxysporum with a minimal inhibitory concentration of 0.6 micromol l(-1). CONCLUSION: The proposed purification protocol produces a native-like defensin suitable for tests of new biological roles. SIGNIFICANCE AND IMPACT OF THE STUDY: Plant defensins are essentially known as anti-fungal proteins; however, some unexpected actions on plant cells have recently been discovered. AhPDF1.1, for example, has been shown to confer zinc tolerance. Efficient production of native-like defensins is required to explore the different targets and roles of plant defensins.


Asunto(s)
Arabidopsis/metabolismo , Defensinas/metabolismo , Escherichia coli/metabolismo , Hojas de la Planta/metabolismo , Proteínas de Plantas/metabolismo , Secuencia de Aminoácidos , Arabidopsis/genética , Secuencia de Bases , Cromatografía de Afinidad , Cromatografía Líquida de Alta Presión , Dicroismo Circular , Defensinas/genética , Electroforesis en Gel de Poliacrilamida , Escherichia coli/genética , Espectroscopía de Resonancia Magnética , Datos de Secuencia Molecular , Proteínas de Plantas/genética , Pliegue de Proteína , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción
3.
Colloids Surf B Biointerfaces ; 59(1): 74-80, 2007 Sep 01.
Artículo en Inglés | MEDLINE | ID: mdl-17560095

RESUMEN

Nanoparticles combining a hydrophobically modified dextran core and a polysaccharide surface coverage were elaborated. Their suitability for applications like drug delivery was evaluated. The selected polysaccharide, dextran, was chemically modified by the covalent attachment of hydrocarbon groups (aliphatic or aromatic) via the formation of ether links. According to the extent of modification, either water-soluble or water-insoluble dextran derivatives were obtained. The latter exhibited solubility in organic solvents like tetrahydrofuran or dichloromethane saturated with water. Water-soluble dextran derivatives were used as polymeric surfactants for the control of nanoparticles surface characteristics. Nanoparticles were prepared either by o/w emulsion or solvent-diffusion methods. The size and surface properties of dextran nanoparticles were correlated to processing conditions. The stability of colloidal suspensions was examined as a function of ionic strength and related to the particle surface characteristics. The redispersability of freeze-dried suspensions without the addition of cryoprotectant was demonstrated. Finally, the degradability of modified dextrans was compared to that of starting dextran, after enzymatic hydrolysis in the presence of dextranase.


Asunto(s)
Dextranos/química , Portadores de Fármacos/química , Nanopartículas/química , Coloides , Dextranasa/metabolismo , Dextranos/síntesis química , Dextranos/metabolismo , Portadores de Fármacos/síntesis química , Portadores de Fármacos/metabolismo , Estabilidad de Medicamentos , Emulsiones , Liofilización , Interacciones Hidrofóbicas e Hidrofílicas , Técnicas In Vitro , Ensayo de Materiales , Modelos Moleculares , Estructura Molecular , Tamaño de la Partícula , Solventes , Propiedades de Superficie
4.
Acta Crystallogr D Biol Crystallogr ; 57(Pt 11): 1677-9, 2001 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-11679742

RESUMEN

Numerous precursors of antibacterial peptides with unrelated sequences share a similar prosequence which belongs to the cathelicidin family of proteins. The three-dimensional structure of this cathelicidin motif, which contains two disulfide bonds, has not yet been reported. The cathelicidin motif (ProS) of the protegrin-3 precursor was overexpressed in Escherichia coli as a His-tagged protein. The His(6) tag was removed by thrombin cleavage. ProS was purified to homogeneity and single crystals were obtained by the hanging-drop vapour-diffusion method at pH 3-4. Preliminary X-ray diffraction analysis indicated that these crystals belong to the hexagonal space group P6(1)22 or P6(5)22, with unit-cell parameters a = b = 51.42, c = 134.25 A. These crystals diffracted beyond 2.75 A (1.9 A at ESRF) and contain one molecule per asymmetric unit.


Asunto(s)
Proteínas/química , Secuencias de Aminoácidos , Péptidos Catiónicos Antimicrobianos , Proteínas Sanguíneas/química , Cristalización , Cristalografía por Rayos X , Conformación Proteica , Precursores de Proteínas/química , Proteínas Recombinantes/química
5.
J Med Chem ; 44(18): 3022-30, 2001 Aug 30.
Artículo en Inglés | MEDLINE | ID: mdl-11520211

RESUMEN

Using a segment strategy, we have synthesized four iodinated photoactivatable cyclic peptidic ligands of oxytocin, bearing a beta-mercapto-betabeta-cyclopentamethylene propionic group (Pmp) on their N-terminus. All the syntheses were RP-HPLC monitored, and the compounds were HPLC purified. They were characterized by 1H NMR, MALDI-TOF, or FAB mass spectrometries. The affinities of Pmp-Tyr(Me)-Ile-Thr-Asn-Cys-Gly-Orn-Phe(3I,4N3)-NH2 (20), Pmp-Tyr-Ile-Thr-Asn-Cys-Gly-Orn-Phe(3I,4N3)-NH2 (21), Pmp-Tyr(Me)-Ile-Thr-Asn-Cys-Pro-Orn-Phe(3I,4N3)-NH2 (22), and Pmp-Tyr-Ile-Thr-Asn-Cys-Pro-Orn-Phe(3I,4N3)-NH2 (23) were evaluated as inhibition constants (K(i), in nM) for the human oxytocin receptor expressed in Chinese hamster ovary cells by displacement of a radioiodinated disulfide-cyclized antagonist (Elands et al. Eur. J. Pharmacol. 1987, 147, 197-207). The most potent of them, compound 22, was synthesized by another method in order to allow its radiolabeling by 125I. Its dissociation constant (K(d)) for the human oxytocin receptor, directly measured in saturation studies, was 0.25 +/- 0.04 nM, and its antagonist properties were determined by inactivation of phospholipase C, thus obtaining an inactivation constant (K(inact)) of 0.18 +/- 0.02 nM, evaluated by inositol phosphate accumulation. This compound is a very good tool for the mapping of peptidic antagonist binding sites in the human oxytocin receptor.


Asunto(s)
Péptidos Cíclicos/síntesis química , Receptores de Oxitocina/antagonistas & inhibidores , Animales , Unión Competitiva , Células CHO , Cromatografía Líquida de Alta Presión , Cricetinae , Diseño de Fármacos , Humanos , Técnicas In Vitro , Fosfatos de Inositol/biosíntesis , Radioisótopos de Yodo , Espectroscopía de Resonancia Magnética , Péptidos Cíclicos/química , Péptidos Cíclicos/farmacología , Fotólisis , Ensayo de Unión Radioligante , Espectrometría de Masa Bombardeada por Átomos Veloces , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción , Relación Estructura-Actividad
6.
Biochemistry ; 39(47): 14436-47, 2000 Nov 28.
Artículo en Inglés | MEDLINE | ID: mdl-11087396

RESUMEN

MGD-1 is a 39-residue defensin-like peptide isolated from the edible Mediterranean mussel, Mytilus galloprovincialis. This peptide is characterized by the presence of four disulfide bonds. We report here its solid-phase synthesis and an easy way to improve the yield of the four native disulfide bonds. Synthetic and native MGD-1 display similar antibacterial activity, suggesting that the hydroxylation of Trp28 observed in native MGD-1 is not involved in the antimicrobial effect. The three-dimensional solution structure of MGD-1 has been established using (1)H NMR and mainly consists of a helical part (Asn7-Ser16) and two antiparallel beta-strands (Arg20-Cys25 and Cys33-Arg37), together giving rise to the common cystine-stabilized alpha-beta motif frequently observed in scorpion toxins. In MGD-1, the cystine-stabilized alpha-beta motif is stabilized by four disulfide bonds (Cys4-Cys25, Cys10-Cys33, Cys14-Cys35, and Cys21-Cys38), instead of by the three disulfide bonds commonly found in arthropod defensins. Except for the Cys21-Cys38 disulfide bond which is solvent-exposed, the three others belong to the particularly hydrophobic core of the highly constrained structure. Moreover, the C4-P5 amide bond in the cis conformation characterizes the MGD-1 structure. MGD-1 and insect defensin A possess similar bactericidal anti-Gram-positive activity, suggesting that the fourth disulfide bond of MGD-1 is not essential for the biological activity. In agreement with the general features of antibacterial peptides, the MGD-1 and defensin A structures display a typical distribution of positively charged and hydrophobic side chains. The positively charged residues of MGD-1 are located in three clusters. For these two defensin peptides isolated from insects and mollusks, it appears that the rather well conserved location of certain positively charged residues and of the large hydrophobic cluster are enough to generate the bactericidal potency and the Gram-positive specificity.


Asunto(s)
Antiinfecciosos/química , Antiinfecciosos/farmacología , Bivalvos/química , Defensinas , Disulfuros/química , Proteínas/química , Proteínas/fisiología , Secuencias de Aminoácidos , Animales , Antiinfecciosos/síntesis química , Arginina/química , Dicroismo Circular , Simulación por Computador , Cisteína/química , Cistina/química , Disulfuros/síntesis química , Glicina/química , Pruebas de Sensibilidad Microbiana , Modelos Moleculares , Resonancia Magnética Nuclear Biomolecular , Oxidación-Reducción , Prolina/química , Conformación Proteica , Estructura Secundaria de Proteína , Proteínas/síntesis química , Alineación de Secuencia , Soluciones
7.
Phytochemistry ; 54(8): 951-7, 2000 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-11014296

RESUMEN

Four new steroidal alkaloids, N20-formylbuxaminol E [(20S)-16alpha-hydroxy-20-(formylamino)-3beta-(dimethylamino)-9,10 -seco-buxa-9(11),10(19)-diene] (1), O16-syringylbuxaminol E [(20S)-16alpha-syringoyl-3beta-(dimethylamino)-20-(amino)-9, 10-seco-buxa-9(11),10(19)-diene] (2), N20-acetylbuxamine G [(20S)-20-(acetylamino)-3beta-(methylamino)-9,10-seco-buxa-9(11),1 0(19)-diene] (3) and N20-acetylbuxamine E [(20S)-20-(acetylamino)-3beta-(dimethylamino)-9,10-seco-buxa-9(11) ,10(19)-diene] (4) were isolated from the leaves of Buxus sempervirens. Their structures were determined mainly on the basis of 2D NMR studies.


Asunto(s)
Alcaloides/aislamiento & purificación , Magnoliopsida/química , Esteroides/química , Alcaloides/química , Estructura Molecular , Hojas de la Planta/química , Análisis Espectral
8.
J Med Chem ; 43(12): 2387-94, 2000 Jun 15.
Artículo en Inglés | MEDLINE | ID: mdl-10882365

RESUMEN

We have previously synthesized a potent and selective B(1) bradykinin receptor antagonist, JMV1645 (H-Lys-Arg-Pro-Hyp-Gly-Igl-Ser-D-BT-OH), containing a dipeptide mimetic ((3S)-amino-5-carbonylmethyl-2,3-dihydro-1, 5-benzothiazepin-4(5H)-one (D-BT) moiety) at the C-terminal. Analogues of this potent B(1) bradykinin receptor antagonist in which the central Pro(2)-Hyp(3)-Gly(4)-Igl(5) tetrapeptide has been replaced by constrained N-1-substituted-1,3,8-triazaspiro¿4. 5decan-4-one ring system were synthesized. Among these analogues, compound JMV1640 (1) was found to have an affinity of 24.10 +/- 9.48 nM for the human cloned B(1) receptor. It antagonized the ¿des-Arg(10)-kallidin-induced contraction of the human umbilical vein (pA(2) = 6.1 +/- 0.1). Compound 1 was devoid of agonist activity at the kinin B(1) receptor. Moreover, it did not bind to the human cloned B(2) receptor. Therefore, JMV1640 constitutes a lead compound for the rational search of nonpeptide B(1) receptor analogues based on the BK sequence.


Asunto(s)
Antagonistas de los Receptores de Bradiquinina , Oligopéptidos/síntesis química , Tiazepinas/síntesis química , Animales , Células CHO , Cricetinae , Diseño de Fármacos , Técnicas In Vitro , Espectroscopía de Resonancia Magnética , Contracción Muscular/efectos de los fármacos , Músculo Liso Vascular/efectos de los fármacos , Músculo Liso Vascular/fisiología , Oligopéptidos/química , Oligopéptidos/metabolismo , Oligopéptidos/farmacología , Receptor de Bradiquinina B1 , Relación Estructura-Actividad , Tiazepinas/química , Tiazepinas/metabolismo , Tiazepinas/farmacología , Transfección , Venas Umbilicales/efectos de los fármacos , Venas Umbilicales/fisiología
9.
Eur J Biochem ; 267(13): 4253-63, 2000 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-10866830

RESUMEN

Despite their opposite effects on signal transduction, the nonapeptide hormone arginine-vasopressin (AVP) and its V1a receptor-selective cyclic peptide antagonist d(CH2)5[Tyr(Me)2]AVP display homologous primary structures, differing only at residues 1 and 2. These structural similarities led us to hypothesize that both ligands could interact with the same binding pocket in the V1a receptor. To determine receptor residues responsible for discriminating binding of agonist and antagonist ligands, we performed site-directed mutagenesis of conserved aromatic and hydrophilic residues as well as nonconserved residues, all located in the transmembrane binding pocket of the V1a receptor. Mutation of aromatic residues of transmembrane region VI (W304, F307, F308) reduced affinity for the d(CH2)5[Tyr(Me)2]AVP and markedly decreased affinity for the unrelated strongly hydrophobic V1a-selective nonpeptide antagonist SR 49059. Replacement of these aromatic residues had no effect on AVP binding, but increased AVP-induced coupling efficacy of the receptor for its G protein. Mutating hydrophilic residues Q108, K128 and Q185 in transmembrane regions II, III and IV, respectively, led to a decrease in affinity for both agonists and antagonists. Finally, the nonconserved residues T333 and A334 in transmembrane region VII, controlled the V1a/V2 binding selectivity for both nonpeptide and cyclic peptide antagonists. Thus, because conserved aromatic residues of the V1a receptor binding pocket seem essential for antagonists and do not contribute at all to the binding of agonists, we propose that these residues differentiate agonist vs. antagonist ligand binding.


Asunto(s)
Receptores de Vasopresinas/química , Secuencia de Aminoácidos , Animales , Antagonistas de los Receptores de Hormonas Antidiuréticas , Arginina Vasopresina/metabolismo , Sitios de Unión , Células COS , Membrana Celular/química , Secuencia Conservada , Humanos , Ligandos , Datos de Secuencia Molecular , Mutagénesis Sitio-Dirigida , Receptores de Vasopresinas/metabolismo
10.
Eur J Biochem ; 266(3): 977-85, 1999 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-10583392

RESUMEN

The chimeric peptide [Lys(-2)-Arg(-1)]-sarafotoxin-S6b (KR-SRTb) designed from the Lys-2-Arg-1 dipeptide of the endothelin pro-sequence and the sarafotoxin-S6b sequence was synthesized. Its contractile activity was found to be decreased markedly when compared with that of the parent SRTb. In contrast, the extension by the Lys-Arg dipeptide was found to increase the formation of the native disulfide isomer (82/18 versus 96/4) when the reaction was carried out in the presence of redox reagents. The solution structure of KR-SRTb was determined by NMR as a function of pH. In the carboxylic acid state, the structure consists of the cystine-stabilized alpha-helical motif, with the alpha-helical part spanning residues 9-15, and of an unstructured C-terminal tail. In the carboxylate state, the structure is characterized by a salt-bridge between Arg(-1) and Asp8, which we identified previously in the [Lys(-2)-Arg(-1)]-endothelin-1 peptide (KR-ET-1). The fact that this salt-bridge is commonly observed in KR-SRTb and KR-ET-1, despite the 33% sequence difference between the corresponding parental peptides, highlights the remarkable adaptability of the Lys-Arg extension for the formation of a special salt-bridge. As a consequence, this salt-bridge, which does not depend on either the 4-7 sequence of the loop or the C-terminal sequence, appears to be particularly well suited to improve the stability of the cystine-stabilized alpha-helical motif. Therefore, because of its high yield in the native disulfide arrangement and its high permissiveness for sequence mutation in the 4-7 loop, such a stabilized cystine-stabilized alpha-helical motif could be a valuable scaffold for the presentation of a library of constrained short peptides.


Asunto(s)
Endotelina-1/química , Endotelina-1/farmacología , Venenos de Víboras/química , Venenos de Víboras/farmacología , Secuencia de Aminoácidos , Animales , Disulfuros/química , Endotelina-1/genética , Técnicas In Vitro , Espectroscopía de Resonancia Magnética , Modelos Moleculares , Datos de Secuencia Molecular , Oxidación-Reducción , Estructura Secundaria de Proteína , Ratas , Proteínas Recombinantes de Fusión/química , Proteínas Recombinantes de Fusión/genética , Proteínas Recombinantes de Fusión/farmacología , Sales (Química) , Relación Estructura-Actividad , Vasoconstrictores/química , Vasoconstrictores/farmacología , Venenos de Víboras/genética
11.
J Magn Reson ; 140(1): 189-99, 1999 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-10479562

RESUMEN

We describe a quantitative processing method which gives access to the longitudinal and transverse cross-relaxation rates from off-resonance ROESY intensities. This method takes advantage of the dependence of the off-resonance ROESY experiments at any mixing time and any spin-lock angle θ on two relaxation matrices, the longitudinal and the transverse ones. This allows one to take into account multistep magnetization transfers even if the measurements are performed only at one or two mixing times. The ratio of the longitudinal to transverse cross-relaxation rates can then be used as a local indicator of the internal dynamics, without assuming a structure or a model of motion. After validation of this processing method by numerical simulations, it is applied to the analysis of the dynamics of the peptide ranalexin dissolved in pure water and in water/TFE.


Asunto(s)
Antiinfecciosos/química , Resonancia Magnética Nuclear Biomolecular , Péptidos Cíclicos/química , Simulación por Computador , Difusión , Análisis de Fourier , Método de Montecarlo , Análisis de Regresión , Procesamiento de Señales Asistido por Computador , Trifluoroetanol , Agua
12.
Nucleosides Nucleotides ; 18(2): 263-75, 1999 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-10067276

RESUMEN

A new family of molecules potentially inhibitors of the HIV-1 Tat-TAR complex was prepared. These compounds are constituted by dinucleotide analogs (PNA dimer) bound, through a linker, to an arginine residue. In this series, several molecules inhibit viral development in cell culture with a micromolar IC50 and without cellular toxicity until 200 microM concentration.


Asunto(s)
Fármacos Anti-VIH/síntesis química , Nucleótidos/síntesis química , Ácidos Nucleicos de Péptidos/síntesis química , Arginina/análogos & derivados , Productos del Gen tat/genética , Duplicado del Terminal Largo de VIH/genética , VIH-1/efectos de los fármacos , VIH-2/efectos de los fármacos , Estructura Molecular , Conformación de Ácido Nucleico , Nucleótidos/farmacología , Ácidos Nucleicos de Péptidos/farmacología , ARN Viral/genética , Proteínas de Unión al ARN/genética , Productos del Gen tat del Virus de la Inmunodeficiencia Humana
13.
Biochemistry ; 37(15): 5220-30, 1998 Apr 14.
Artículo en Inglés | MEDLINE | ID: mdl-9548753

RESUMEN

The [Lys-Arg]-endothelin-1 analogue (KR-ET-1) yields almost selectively the native disulfide pattern (96%), in contrast to endothelin-1 (ET-1) that gives at least 25% of the non-native disulfide pattern. We have previously shown that the carboxylate-state structure of KR-ET-1 is more constrained and stabilized by a salt bridge between Arg(-1) and the Asp8 or Glu10 side chain [Aumelas et al. (1995) Biochemistry 34, 4546-4561]. To identify this salt bridge and its potential involvement in the disulfide bond formation, [E10Q], [D18N], and [D8N] carboxamide analogues were studied, which led to the unambiguous identification of the Arg(-1)-Asp8 salt bridge. Furthermore, while [E10Q] and [D18N] analogues gave a high yield of the native isomer (>/=90%), the [D8N] analogue afforded a ratio of the two isomers close to that observed for ET-1 (68%) [Kubo et al. (1997) Lett. Pept. Sci. 4, 185-192]. Assuming that the formation of disulfide bonds occurs in a thermodynamically controlled step, we have hypothesized that the Arg(-1)-Asp8 salt bridge and concomitant interactions could be responsible for the increase in yield of the native isomer of KR-ET-1. In the present work, we describe the structural studies of the carboxamide analogues and of the minor non-native KR-ET-1 isomer. On the basis of 1H NMR and CD spectra as a function of pH, [E10Q] and [D18N] analogues display a conformational change similar to that of the parent peptide, whereas the structure of the [D8N] analogue is unchanged. For the non-native isomer, we measured a lower helical content than for the native isomer and observed a marked difference in the orientation of the KRCSC backbone. In addition, no salt bridge was experimentally observed. Altogether, these results allow us to hypothesize that the salt bridge between two highly conserved residues, one belonging to the prosequence [Arg(-1)] and the other to the mature sequence [Asp8], is involved in the formation of the native disulfide isomer of ET-1. The involvement of the prosequence in the formation of the native disulfide isomer strongly suggests that, in the maturation pathway of ET-1, cleavage of the Arg52-Cys53 amide bond occurs after native disulfide bond formation.


Asunto(s)
Disulfuros/química , Endotelina-1/química , Endotelinas/química , Precursores de Proteínas/química , Señales de Clasificación de Proteína/química , Secuencia de Aminoácidos , Arginina/química , Ácido Aspártico/química , Cistina/química , Espectrometría de Masas , Modelos Moleculares , Datos de Secuencia Molecular , Resonancia Magnética Nuclear Biomolecular , Conformación Proteica , Termodinámica
14.
Eur J Biochem ; 253(1): 221-8, 1998 Apr 01.
Artículo en Inglés | MEDLINE | ID: mdl-9578480

RESUMEN

Ranalexin, a 20-residue peptide isolated from the skin of the bullfrog Rana catesbeiana displays antimicrobial activity. This peptide contains two cysteine residues in positions 14 and 20 linked by a disulphide bridge. Ranalexin was chemically synthesised and close antimicrobial activities were measured for the reduced and oxidised forms. The solution structure of ranalexin was determined by using circular dichroism, proton NMR spectroscopy and molecular modelling techniques. The reduced and oxidised forms of ranalexin are mainly unstructured in water but display an alpha-helical structure spanning residues 8-15 and 8-17, respectively, in a trifluoroethanol/water mixture (3:7, by vol.). Ranalexin was found to interact with micelles of dodecylphosphocholine and to adopt a similar helical structure. Moreover, slow-exchanging amide protons located on the same side of the helix suggest that the hydrophobic face of the helix lies on the micelle surface. Hydrophobic residues of the poorly structured N-terminal part which are important for the biological activity are also involved in the interaction with micelles. Taken together, the results suggest that the disulphide bond does not strongly affect either the conformation or the antimicrobial activity of ranalexin.


Asunto(s)
Antibacterianos/química , Péptidos Cíclicos/química , Secuencia de Aminoácidos , Animales , Antibacterianos/síntesis química , Antibacterianos/farmacología , Dicroismo Circular , Cisteína/química , Deuterio , Escherichia coli/efectos de los fármacos , Espectroscopía de Resonancia Magnética , Micelas , Modelos Moleculares , Datos de Secuencia Molecular , Oxidación-Reducción , Péptidos Cíclicos/síntesis química , Péptidos Cíclicos/farmacología , Fosforilcolina/análogos & derivados , Conformación Proteica , Estructura Secundaria de Proteína , Rana catesbeiana , Piel/química , Soluciones , Staphylococcus epidermidis/efectos de los fármacos , Trifluoroetanol , Agua
15.
FEBS Lett ; 421(3): 263-7, 1998 Jan 16.
Artículo en Inglés | MEDLINE | ID: mdl-9468319

RESUMEN

Protegrins are members of a family of five Cys-rich naturally occurring cationic antimicrobial peptides. The NMR solution structure of protegrin-1 (PG-1) has been previously determined as a monomeric beta-hairpin both in water and in dimethylsulfoxide solution. Protegrins are bactericidal peptides but their mechanism of action is still unknown. In order to investigate the structural basis of their cytotoxicity, we studied the effect of lipid micelles on the structure of PG-1. The NMR study reported in the present work indicates that PG-1 adopts a dimeric structure when it binds to dodecylphosphocholine micelles. Moreover, the amide proton exchange study suggests the possibility of an association between several dimers.


Asunto(s)
Antiinfecciosos/química , Oligopéptidos/química , Fosforilcolina/análogos & derivados , Proteínas/química , Antiinfecciosos/metabolismo , Péptidos Catiónicos Antimicrobianos , Micelas , Resonancia Magnética Nuclear Biomolecular , Oligopéptidos/metabolismo , Fosforilcolina/metabolismo , Fosforilcolina/farmacología , Conformación Proteica , Proteínas/metabolismo , Protones , Volumetría
16.
Eur J Biochem ; 247(3): 906-13, 1997 Aug 01.
Artículo en Inglés | MEDLINE | ID: mdl-9288914

RESUMEN

We have synthesized and fully characterized by fast-atom-bombardment-mass, NMR and ultraviolet spectroscopies the vasopressin antagonist 3-azidophenylpropionyl-D-Tyr(Me)-Phe-Gln-Asn-Arg-Pro-Arg-Tyr(3I )-NH2. Easily radioiodinatable just before use, it has a high affinity for the natural rat liver V1a receptor [dissociation constant (Kd) = 54 +/- 20 pM; Carnazzi, E., Aumelas, A., Barberis, C., Guillon, G. & Seyer, R. (1994) J. Med. Chem. 37, 1841-1849] and for both the rat vasopressin V1a receptor expressed in Spodoptera frugiperda 9 cells (Sf9 cells, Kd = 688 +/- 35 pM) and in COS-7 cells (Kd = 320 +/- 20 pM). This probe labels specifically the V1a receptors in an ultraviolet-dependent manner, and binds covalently to about 12% of the receptors with high stability over several days, even in dissociation or solubilization conditions. SDS/PAGE studies and autoradiographic analyses of the photolabeled receptors reveal a single band (49.5 kDa) and two bands (63 kDa and 93.6 kDa) for receptor-probe associations obtained in Sf9 and COS-7 cells respectively. These molecular masses are consistent with non-glycosylated and highly glycosylated forms of the receptor, according to each expression system. In rat liver membranes, we have identified apparent molecular masses of about 32, 45 and more than 67 kDa. We finally demonstrated a proteolysis of the receptor that appeared to be Zn2+ and leupeptin sensitive. The high potency of this ligand is promising for the monitoring of the purification of the V1a receptor and for mapping its antagonist-binding site.


Asunto(s)
Azidas/química , Oligopéptidos/química , Receptores de Vasopresinas/química , Marcadores de Afinidad , Animales , Antagonistas de los Receptores de Hormonas Antidiuréticas , Células COS , Membrana Celular/química , Electroforesis en Gel de Poliacrilamida , Femenino , Hidrólisis , Leupeptinas/farmacología , Hígado/química , Espectroscopía de Resonancia Magnética , Masculino , Fotoquímica , Ratas , Ratas Wistar , Receptores de Vasopresinas/metabolismo , Proteínas Recombinantes/antagonistas & inhibidores , Proteínas Recombinantes/química , Proteínas Recombinantes/metabolismo , Espectrofotometría Ultravioleta , Spodoptera , Zinc/farmacología
17.
Carbohydr Res ; 302(1-2): 67-78, 1997 Jul 11.
Artículo en Inglés | MEDLINE | ID: mdl-9249952

RESUMEN

Saponins SAPO50 and SAPO30, of which SAPO50 is highly haemolytic, have been isolated from the commercial Merck Saponin. Their structures have been determined exclusively by high-field gradient-enhanced NMR methods. The 1H and 13C NMR spectra of these saponins in pyridine-deuterium oxide have been assigned by homonuclear and heteronuclear correlation experiments. Anomeric configurations were obtained by combined use of 1JCH, 3JH-1.H-2, and 1D-NOESY data. Sugar residues were identified by use of 3JHH values obtained from their subspectra recorded using an optimized 1D-zeta-TOCSY sequence. Linkage assignments were made using the ge-HMBC and 1D-NOESY spectra. This study shows that SAPO50 represents a hitherto undescribed saponin with the following structure: 3-O-beta-D-xylopyranosyl-(1-->3)-[beta-D-galactopyranosyl- (1-->2)]-beta-D-glucuronopyranosyl gypsogenin 28-O-(6-deoxy-beta-D-glucopyranosyl)-(1-->4)-[beta-D-xylopyranosyl-(1--> 3)- beta-D-xylopyranosyl-(1-->4)]-alpha-L-rhamnopyranosyl-(1-->2)-beta-D- fucopyranoside. SAPO30, however, corresponds to a saponin previously described [D. Frechet, B. Christ, B. Monegier du Sorbier, H. Fischer, and M. Vuilhorgne, Phytochemistry, 30 (1991) 927-931].


Asunto(s)
Ácido Oleanólico/análogos & derivados , Saponinas/química , Saponinas/aislamiento & purificación , Conformación de Carbohidratos , Secuencia de Carbohidratos , Espectroscopía de Resonancia Magnética , Datos de Secuencia Molecular , Oligosacáridos/química
18.
Braz J Med Biol Res ; 29(10): 1253-63, 1996 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-9181094

RESUMEN

The synthesis of analogs of the C-terminal tridecapeptide of gastrin is described. These pseudopeptide analogs were obtained either by replacing the C-terminal phenylalanine amide with 2-phenylethylalcohol or with 2-phenylethylamine, or by replacing the peptide bond between Trp and Leu, or between Leu and Asp with an aminomethylene (CH2NH). The ability of these compounds to stimulate gastric acid secretion in anesthetized rats and to inhibit binding of labeled CCK-8 to isolated cells from rabbit fundic mucosa was tested. [desPhe13, Leu11]-HG-12-I-beta-phenylethylester 33, [desPhe13, Leu11]-HG-12-II-beta-phenylethylester 38, [desPhe13, Leu11]-HG-12-I-beta-phenylethylamide 32, and [desPhe13, Leu11]-HG-12-II-beta-phenylethylamide 37 acted as gastrin receptor antagonists, while [Trp10-psi(CH2NH)-Leu11]-HG-13-I 31 and [Trp10-psi(CH2NH)-Leu11]-HG-13-II 36 acted as agonists. Unexpectedly, [Leu11-psi(CH2NH)-Asp12]-HG-13-I 30 and [Leu11-psi (CH2NH)-Asp12]-HG-13-II 35 were almost devoid of affinity for the gastrin receptor.


Asunto(s)
Gastrinas/biosíntesis , Ácido Gástrico/metabolismo , Gastrinas/química , Humanos , Biosíntesis de Péptidos , Receptores de Colecistoquinina/antagonistas & inhibidores
19.
Rev. bras. pesqui. méd. biol ; Braz. j. med. biol. res;29(10): 1253-63, Oct. 1996. ilus, tab
Artículo en Inglés | LILACS | ID: lil-186171

RESUMEN

The synthesis of analogs of the C-terminal tridecapeptide of gastrin in described. These pseudopeptide analogs were obtained either by replacing the C-terminal phenylalanine amide with 2-phenylethytalcohol or with 2-phenylethylamine, or by replacing the peptid bond between Trp and Leu, or between Leu and Asp with an aminomethylene (CH2NH). The ability of these compounds to stimulate gastric acid secretion in anesthetized rats and to inhibit binding of labeled CCK-8 to isolated cells from rabbit fundic mucosa was tested. [desPhe13, Leu11]-HG-12-I-beta-phenylethylester 33, [desPhe13, Leu11]-HG-12-II-beta-phenylethylester 38 [desPhe13, Leu11]-HG-12-I-beta-phenylethylamide 32, and [desPhe13, Leu11]-HG-12-II-beta-phenylethylamide 37 acted as gastrin receptor antagonists, while [Trp10-((CH2NH)-Leu11]-HG-13-I 31 and (Trp10-((CH2NH)-Leu11]-HG-13-II 36 acted as agonists. Unexpectedly, [Leu11-((CH2NH)-Asp12]-HG-13-I 30 and [Leu11-((CH2NH)-Asp12]-HG-13-II 35 were almost devoid of affinity for the gastrin receptor.


Asunto(s)
Humanos , Ácido Gástrico/metabolismo , Gastrinas/biosíntesis , Péptidos/biosíntesis , Receptores de Colecistoquinina/antagonistas & inhibidores , Gastrinas/química , Péptidos/síntesis química
20.
Eur J Biochem ; 237(3): 575-83, 1996 May 01.
Artículo en Inglés | MEDLINE | ID: mdl-8647100

RESUMEN

Protegrins are members of a family of five Cys-rich, cationic antimicrobial peptides recently isolated from porcine cells. We have synthesised an 18-amino-acid peptide that corresponds to protegrin-1. After Cys oxidation, the peptide has bactericidal activity against gram-positive and gram-negative bacteria, similar to that described for the natural peptide. The solution structure of protegrin-1 was investigated by means of 1H-NMR spectroscopy in water and in (CD3)2SO, with distance-geometry and simulated-annealing calculations. The C6-C15 and C8-C13 disulfide pattern was determined on the basis of NMR-derived constraints. These two parallel disulfide bridges stabilised a beta-sheet structure which comprised two antiparallel strands (residues 5-9 and 12-16) linked by a distorted beta-turn (residues 9-12). The N-terminus and C-terminus were essentially disordered. The distribution of hydrophobic and hydrophilic residues at the peptide surface was found to be a structural feature shared with tachyplesin-1, a related peptide which displays cytolytic activity, and, to a lesser extent, with mammalian defensins. These findings led us to assume that the distribution pattern could be required for the cytolytic activity of these peptides.


Asunto(s)
Antibacterianos/química , Antibacterianos/síntesis química , Proteínas/química , Proteínas/síntesis química , Secuencia de Aminoácidos , Animales , Antibacterianos/farmacología , Péptidos Catiónicos Antimicrobianos , Bacterias Gramnegativas/efectos de los fármacos , Bacterias Grampositivas/efectos de los fármacos , Humanos , Espectroscopía de Resonancia Magnética , Modelos Moleculares , Datos de Secuencia Molecular , Estructura Molecular , Conformación Proteica , Proteínas/genética , Conejos , Homología de Secuencia de Aminoácido , Soluciones , Porcinos , Termodinámica
SELECCIÓN DE REFERENCIAS
DETALLE DE LA BÚSQUEDA