Your browser doesn't support javascript.
loading
Mostrar: 20 | 50 | 100
Resultados 1 - 20 de 35
Filtrar
1.
Structure ; 21(4): 550-9, 2013 Apr 02.
Artículo en Inglés | MEDLINE | ID: mdl-23454188

RESUMEN

GTPases of immunity-associated proteins (GIMAPs) are regulators of lymphocyte survival and homeostasis. We previously determined the structural basis of GTP-dependent GIMAP2 scaffold formation on lipid droplets. To understand how its GTP hydrolysis is activated, we screened for other GIMAPs on lipid droplets and identified GIMAP7. In contrast to GIMAP2, GIMAP7 displayed dimerization-stimulated GTP hydrolysis. The crystal structure of GTP-bound GIMAP7 showed a homodimer that assembled via the G domains, with the helical extensions protruding in opposite directions. We identified a catalytic arginine that is supplied to the opposing monomer to stimulate GTP hydrolysis. GIMAP7 also stimulated GTP hydrolysis by GIMAP2 via an analogous mechanism. Finally, we found GIMAP2 and GIMAP7 expression differentially regulated in several human T cell lymphoma lines. Our findings suggest that GTPase activity in the GIMAP family is controlled by homo- and heterodimerization. This may have implications for the differential roles of some GIMAPs in lymphocyte survival.


Asunto(s)
Activación Enzimática/fisiología , GTP Fosfohidrolasas/química , Proteínas de Unión al GTP/química , Proteínas de la Membrana/química , Modelos Moleculares , Conformación Proteica , Linfocitos T/metabolismo , Calorimetría , Línea Celular , Cristalización , Dimerización , GTP Fosfohidrolasas/metabolismo , Proteínas de Unión al GTP/metabolismo , Humanos , Hidrólisis , Metabolismo de los Lípidos/fisiología , Proteínas de la Membrana/metabolismo , Microscopía Fluorescente , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa , Ultracentrifugación
2.
EMBO J ; 31(17): 3635-46, 2012 Aug 29.
Artículo en Inglés | MEDLINE | ID: mdl-22850675

RESUMEN

Stomatin proteins oligomerize at membranes and have been implicated in ion channel regulation and membrane trafficking. To obtain mechanistic insights into their function, we determined three crystal structures of the conserved stomatin domain of mouse stomatin that assembles into a banana-shaped dimer. We show that dimerization is crucial for the repression of acid-sensing ion channel 3 (ASIC3) activity. A hydrophobic pocket at the inside of the concave surface is open in the presence of an internal peptide ligand and closes in the absence of this ligand, and we demonstrate a function of this pocket in the inhibition of ASIC3 activity. In one crystal form, stomatin assembles via two conserved surfaces into a cylindrical oligomer, and these oligomerization surfaces are also essential for the inhibition of ASIC3-mediated currents. The assembly mode of stomatin uncovered in this study might serve as a model to understand oligomerization processes of related membrane-remodelling proteins, such as flotillin and prohibitin.


Asunto(s)
Canales Iónicos Sensibles al Ácido/metabolismo , Proteínas Sanguíneas/metabolismo , Proteínas de la Membrana/metabolismo , Canales Iónicos Sensibles al Ácido/química , Animales , Proteínas Sanguíneas/química , Proteínas Sanguíneas/genética , Células CHO , Células Cultivadas , Cricetinae , Cricetulus , Dimerización , Fibroblastos , Células HEK293 , Humanos , Proteínas de la Membrana/química , Proteínas de la Membrana/genética , Ratones , Ratones Transgénicos , Estructura Terciaria de Proteína , Ratas
3.
J Biol Chem ; 287(11): 8633-40, 2012 Mar 09.
Artículo en Inglés | MEDLINE | ID: mdl-22262864

RESUMEN

In yeast, the membrane-bound HMG-CoA reductase degradation (HRD) ubiquitin-ligase complex is a key player of the ER-associated protein degradation pathway that targets misfolded proteins for proteolysis. Yos9, a component of the luminal submodule of the ligase, scans proteins for specific oligosaccharide modifications, which constitute a critical determinant of the degradation signal. Here, we report the crystal structure of the Yos9 domain that was previously suggested to confer binding to Hrd3, another component of the HRD complex. We observe an αß-roll domain architecture and a dimeric assembly which are confirmed by analytical ultracentrifugation of both the crystallized domain and full-length Yos9. Our binding studies indicate that, instead of this domain, the N-terminal part of Yos9 including the mannose 6-phosphate receptor homology domain mediates the association with Hrd3 in vitro. Our results support the model of a dimeric state of the HRD complex and provide first-time evidence of self-association on its luminal side.


Asunto(s)
Proteínas Portadoras/química , Hidroximetilglutaril-CoA Reductasas/química , Modelos Moleculares , Complejos Multienzimáticos/química , Multimerización de Proteína , Proteínas de Saccharomyces cerevisiae/química , Saccharomyces cerevisiae/química , Ubiquitina-Proteína Ligasas/química , Proteínas Portadoras/genética , Proteínas Portadoras/metabolismo , Cristalografía por Rayos X , Retículo Endoplásmico/química , Retículo Endoplásmico/genética , Retículo Endoplásmico/metabolismo , Hidroximetilglutaril-CoA Reductasas/genética , Hidroximetilglutaril-CoA Reductasas/metabolismo , Complejos Multienzimáticos/genética , Complejos Multienzimáticos/metabolismo , Estructura Terciaria de Proteína , Proteolisis , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/metabolismo , Proteínas de Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/metabolismo , Ubiquitina-Proteína Ligasas/genética , Ubiquitina-Proteína Ligasas/metabolismo , Respuesta de Proteína Desplegada/fisiología
4.
Nat Commun ; 2: 453, 2011 Aug 30.
Artículo en Inglés | MEDLINE | ID: mdl-21878907

RESUMEN

In addition to endocytosis-mediated cellular uptake, hydrophilic cell-penetrating peptides are able to traverse biological membranes in a non-endocytic mode termed transduction, resulting in immediate bioavailability. Here we analysed structural requirements for the non-endocytic uptake mode of arginine-rich cell-penetrating peptides, by a combination of live-cell microscopy, molecular dynamics simulations and analytical ultracentrifugation. We demonstrate that the transduction efficiency of arginine-rich peptides increases with higher peptide structural rigidity. Consequently, cyclic arginine-rich cell-penetrating peptides showed enhanced cellular uptake kinetics relative to their linear and more flexible counterpart. We propose that guanidinium groups are forced into maximally distant positions by cyclization. This orientation increases membrane contacts leading to enhanced cell penetration.


Asunto(s)
Arginina/química , Péptidos de Penetración Celular/química , Péptidos de Penetración Celular/metabolismo , Células/metabolismo , Guanidina/química , Animales , Arginina/metabolismo , Transporte Biológico , Línea Celular , Membrana Celular/química , Membrana Celular/metabolismo , Células/química , Guanidina/metabolismo , Cinética , Ratones , Estructura Molecular
5.
Biochem Biophys Res Commun ; 405(3): 473-9, 2011 Feb 18.
Artículo en Inglés | MEDLINE | ID: mdl-21256114

RESUMEN

Myomesin plays an important structural and functional role in the M-band of striated muscles. The C-terminal domain 13 of myomesin dimerises and forms antiparallel strands which cross-link neighboring Myosin filaments and titin in the M-line of the sarcomeres. These interactions stabilise the contractile apparatus during striated muscle contraction. Since myomesin is an important component of the M-band we screened the myomesin gene for genetic variants in patients with hypertrophic cardiomyopathy (HCM). We identified the missense mutation V1490I in domain 12 of myomesin in a family with inherited HCM. Analytical ultracentrifugation experiments, circular dichroism spectra, and surface plasmon resonance spectroscopy of myomesin fragments were carried out to investigate the effects of the mutation V1490I on structure and function of myomesin domains 11-13 and 12-13. Both the wild type and mutated myomesin domains My11-13 revealed similar secondary structures and formed stable dimers. Mutated myomesin domains My11-13 and My12-13 dimers revealed a reduced thermal stability and a significantly decreased dimerisation affinity, showing disturbed functional properties of V1490I mutated myomesin. However, monomeric myomesin domains My11-12, i.e. without dimerisation domain 13 showed no difference in thermal stability between wild type and V1490I mutated myomesin. In conclusion, the V1490I mutation associated with HCM lead to myomesin proteins with abnormal functional properties which affect dimerisation properties of myomesin domain 13. These effects may contribute to the pathogenesis of HCM.


Asunto(s)
Cardiomiopatía Hipertrófica/genética , Proteínas Musculares/genética , Proteínas Musculares/metabolismo , Adulto , Conectina , Femenino , Humanos , Masculino , Persona de Mediana Edad , Proteínas Musculares/química , Mutación Missense , Linaje , Conformación Proteica , Multimerización de Proteína , Resonancia por Plasmón de Superficie
6.
Proc Natl Acad Sci U S A ; 107(47): 20299-304, 2010 Nov 23.
Artículo en Inglés | MEDLINE | ID: mdl-21059949

RESUMEN

GTPases of immunity-associated proteins (GIMAPs) are a distinctive family of GTPases, which control apoptosis in lymphocytes and play a central role in lymphocyte maturation and lymphocyte-associated diseases. To explore their function and mechanism, we determined crystal structures of a representative member, GIMAP2, in different nucleotide-loading and oligomerization states. Nucleotide-free and GDP-bound GIMAP2 were monomeric and revealed a guanine nucleotide-binding domain of the TRAFAC (translation factor associated) class with a unique amphipathic helix α7 packing against switch II. In the absence of α7 and the presence of GTP, GIMAP2 oligomerized via two distinct interfaces in the crystal. GTP-induced stabilization of switch I mediates dimerization across the nucleotide-binding site, which also involves the GIMAP specificity motif and the nucleotide base. Structural rearrangements in switch II appear to induce the release of α7 allowing oligomerization to proceed via a second interface. The unique architecture of the linear oligomer was confirmed by mutagenesis. Furthermore, we showed a function for the GIMAP2 oligomer at the surface of lipid droplets. Although earlier studies indicated that GIMAPs are related to the septins, the current structure also revealed a strikingly similar nucleotide coordination and dimerization mode as in the dynamin GTPase. Based on this, we reexamined the relationships of the septin- and dynamin-like GTPases and demonstrate that these are likely to have emerged from a common membrane-associated dimerizing ancestor. This ancestral property appears to be critical for the role of GIMAPs as nucleotide-regulated scaffolds on intracellular membranes.


Asunto(s)
GTP Fosfohidrolasas/química , Proteínas de la Membrana/química , Modelos Moleculares , Filogenia , Conformación Proteica , Estructura Terciaria de Proteína , Calorimetría , Cromatografía Líquida de Alta Presión , Cristalización , Dimerización , GTP Fosfohidrolasas/genética , GTP Fosfohidrolasas/metabolismo , Humanos , Hidrólisis , Células Jurkat , Proteínas de la Membrana/genética , Proteínas de la Membrana/metabolismo , Mutagénesis , Nucleótidos/metabolismo , Ultracentrifugación
7.
Pflugers Arch ; 460(4): 719-30, 2010 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-20607281

RESUMEN

Ahnak1, a giant 700 kDa protein, has been implicated in Ca(2+) signalling in various cells. Previous work suggested that the interaction between ahnak1 and Cavbeta(2) subunit plays a role in L-type Ca(2+) current (I (CaL)) regulation. Here, we performed structure-function studies with the most C-terminal domain of ahnak1 (188 amino acids) containing a PxxP consensus motif (designated as 188-PSTP) using ventricular cardiomyocytes isolated from rats, wild-type (WT) mice and ahnak1-deficient mice. In vitro binding studies revealed that 188-PSTP conferred high-affinity binding to Cavbeta(2) (K (d) approximately 60 nM). Replacement of proline residues by alanines (188-ASTA) decreased Cavbeta(2) affinity about 20-fold. Both 188-PSTP and 188-ASTA were functional in ahnak1-expressing rat and mouse cardiomyocytes during whole-cell patch clamp. Upon intracellular application, they increased the net Ca(2+) influx by enhancing I (CaL) density and/or increasing I (CaL) inactivation time course without altering voltage dependency. Specifically, 188-ASTA, which failed to affect I (CaL) density, markedly slowed I (CaL) inactivation resulting in a 50-70% increase in transported Ca(2+) during a 0 mV depolarising pulse. Both ahnak1 fragments also slowed current inactivation with Ba(2+) as charge carrier. By contrast, neither 188-PSTP nor 188-ASTA affected any I (CaL) characteristics in ahnak1-deficient mouse cardiomyocytes. Our results indicate that the presence of endogenous ahnak1 is required for tuning the voltage-dependent component of I (CaL) inactivation by ahnak1 fragments. We suggest that ahnak1 modulates the accessibility of molecular determinants in Cavbeta(2) and/or scaffolds selectively different beta-subunit isoforms in the heart.


Asunto(s)
Canales de Calcio Tipo L/metabolismo , Proteínas de la Membrana/metabolismo , Miocitos Cardíacos/metabolismo , Proteínas de Neoplasias/metabolismo , Secuencias de Aminoácidos , Animales , Western Blotting , Señalización del Calcio/fisiología , Masculino , Proteínas de la Membrana/química , Ratones , Ratones Endogámicos C57BL , Ratones Mutantes , Proteínas de Neoplasias/química , Técnicas de Placa-Clamp , Ratas , Ratas Wistar
8.
Biochem Biophys Res Commun ; 396(4): 939-43, 2010 Jun 11.
Artículo en Inglés | MEDLINE | ID: mdl-20460111

RESUMEN

The denuded IQ2 domain, i.e. myosin heavy chain not associated with regulatory light chains, exerts an inhibitory effect on myosin ATPase activity. In this study, we elaborated a structural explanation for this auto-inhibitory effect of IQ2 on myosin function. We employed analytical ultracentrifugation, circular dichroism, and surface plasmon resonance spectroscopy to investigate structural and functional properties of a myosin heavy chain (MYH) head-rod fragment aa664-915. MYH(664-915) was monomeric, adopted a closed shape, and bound essential myosin light chains (HIS-MLC-1) with low affinity to IQ1. Deletion of IQ2, however opened MYH(664-915). Four amino acids present in IQ2 could be identified to be responsible for this auto-inhibitory structural effect: alanine mutagenesis of I814, Q815, R819, and W827 stretched MYH(664-915) and increased 30-fold the binding affinity of HIS-MLC-1 to IQ1. In this study we show, that denuded IQ2 favours a closed conformation of myosin with a low HIS-MLC-1 binding affinity. The collapsed structure of myosin with denuded IQ2 could explain the auto-inhibitory effects of IQ2 on enzymatic activity of myosin.


Asunto(s)
Adenosina Trifosfatasas/antagonistas & inhibidores , Cadenas Pesadas de Miosina/química , Miosina Tipo II/antagonistas & inhibidores , Animales , Dicroismo Circular , Cadenas Pesadas de Miosina/genética , Cadenas Ligeras de Miosina/química , Estructura Terciaria de Proteína/genética , Ratas , Eliminación de Secuencia , Resonancia por Plasmón de Superficie , Ultracentrifugación
9.
Nature ; 465(7297): 502-6, 2010 May 27.
Artículo en Inglés | MEDLINE | ID: mdl-20428112

RESUMEN

The interferon-inducible dynamin-like myxovirus resistance protein 1 (MxA; also called MX1) GTPase is a key mediator of cell-autonomous innate immunity against pathogens such as influenza viruses. MxA partially localizes to COPI-positive membranes of the smooth endoplasmic reticulum-Golgi intermediate compartment. At the point of infection, it redistributes to sites of viral replication and promotes missorting of essential viral constituents. It has been proposed that the middle domain and the GTPase effector domain of dynamin-like GTPases constitute a stalk that mediates oligomerization and transmits conformational changes from the G domain to the target structure; however, the molecular architecture of this stalk has remained elusive. Here we report the crystal structure of the stalk of human MxA, which folds into a four-helical bundle. This structure tightly oligomerizes in the crystal in a criss-cross pattern involving three distinct interfaces and one loop. Mutations in each of these interaction sites interfere with native assembly, oligomerization, membrane binding and antiviral activity of MxA. On the basis of these results, we propose a structural model for dynamin oligomerization and stimulated GTP hydrolysis that is consistent with previous structural predictions and has functional implications for all members of the dynamin family.


Asunto(s)
Dinaminas/química , Proteínas de Unión al GTP/química , Proteínas de Unión al GTP/metabolismo , Multimerización de Proteína , Antivirales/química , Antivirales/metabolismo , Antivirales/farmacología , Sitios de Unión , Línea Celular , Cristalografía por Rayos X , Dinaminas/metabolismo , GTP Fosfohidrolasas/metabolismo , Proteínas de Unión al GTP/genética , Proteínas de Unión al GTP/farmacología , Guanosina Trifosfato/metabolismo , Humanos , Hidrólisis , Interacciones Hidrofóbicas e Hidrofílicas , Subtipo H5N1 del Virus de la Influenza A/efectos de los fármacos , Subtipo H5N1 del Virus de la Influenza A/fisiología , Modelos Moleculares , Proteínas de Resistencia a Mixovirus , Conformación Proteica , Replicación Viral/efectos de los fármacos
10.
J Neurosci ; 30(8): 2897-910, 2010 Feb 24.
Artículo en Inglés | MEDLINE | ID: mdl-20181587

RESUMEN

The coxsackievirus-adenovirus receptor (CAR) is a member of the Ig superfamily strongly expressed in the developing nervous system. Our histological investigations during development reveal an initial uniform distribution of CAR on all neural cells with a concentration on membranes that face the margins of the nervous system (e.g., the basal laminae and the ventricular side). At more advanced stages, CAR becomes downregulated and restricted to specific regions including areas rich in axonal and dendritic surfaces. To study the function of CAR on neural cells, we used the fiber knob of the adenovirus, extracellular CAR domains, blocking antibodies to CAR, as well as CAR-deficient neural cells. Blocking antibodies were found to inhibit neurite extension in retina organ and retinal explant cultures, whereas the application of the recombinant fiber knob of the adenovirus subtype Ad2 or extracellular CAR domains promoted neurite extension and adhesion to extracellular matrices. We observed a promiscuous interaction of CAR with extracellular matrix glycoproteins, which was deduced from analytical ultracentrifugation experiments, affinity chromatography, and adhesion assays. The membrane proximal Ig domain of CAR, termed D2, was found to bind to a fibronectin fragment, including the heparin-binding domain 2, which promotes neurite extension of wild type, but not of CAR-deficient neural cells. In contrast to heterophilic interactions, homophilic association of CAR involves both Ig domains, as was revealed by ultracentrifugation, chemical cross-linking, and adhesion studies. The results of these functional and binding studies are correlated to a U-shaped homodimer of the complete extracellular domains of CAR detected by x-ray crystallography.


Asunto(s)
Diferenciación Celular/genética , Sistema Nervioso Central/embriología , Sistema Nervioso Central/metabolismo , Regulación del Desarrollo de la Expresión Génica/genética , Neurogénesis/genética , Neuronas/metabolismo , Receptores Virales/metabolismo , Animales , Anticuerpos Bloqueadores/farmacología , Células CHO , Adhesión Celular/genética , Células Cultivadas , Sistema Nervioso Central/citología , Embrión de Pollo , Proteína de la Membrana Similar al Receptor de Coxsackie y Adenovirus , Cricetinae , Cricetulus , Cristalografía por Rayos X , Dimerización , Proteínas de la Matriz Extracelular/metabolismo , Fibronectinas/metabolismo , Humanos , Ratones , Ratones Noqueados , Células 3T3 NIH , Neuritas/metabolismo , Neuritas/ultraestructura , Neuronas/citología , Técnicas de Cultivo de Órganos , Estructura Terciaria de Proteína/fisiología , Receptores Virales/química , Receptores Virales/genética , Retina/citología , Retina/embriología , Retina/metabolismo
11.
Eur Biophys J ; 39(3): 449-55, 2010 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-19266192

RESUMEN

Sedimentation velocity experiments can be used to identify two or more independent non-interacting macromolecules, which differ in their size by only a few percent. The procedure requires the extrapolation of differential apparent sedimentation coefficient distributions obtained at different running time to t --> infinity and works because it eliminates or greatly reduces diffusion effects. Here, we present an improved time extrapolation function of sedimentation distribution profiles originally presented by Stafford (In: Harding, Rowe, Horton (eds.) Analytical ultracentrifugation in biochemistry and polymer science, 1992). We describe a computing procedure with the program LAMM: to analyze concentration profiles obtained by absorbance or interference optics that utilizes suitable smoothing methods for noisy data sets and present examples which include time invariant noises.


Asunto(s)
Centrifugación/métodos , Procesamiento de Señales Asistido por Computador , Algoritmos , Computadores , Sustancias Macromoleculares/química , Peso Molecular , Programas Informáticos , Factores de Tiempo
12.
FEBS J ; 275(18): 4627-40, 2008 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-18699778

RESUMEN

Iba2 is a homolog of ionized calcium-binding adapter molecule 1 (Iba1), a 17-kDa protein that binds and cross-links filamentous actin (F-actin) and localizes to membrane ruffles and phagocytic cups. Here, we present the crystal structure of human Iba2 and its homodimerization properties, F-actin cross-linking activity, cellular localization and recruitment upon bacterial invasion in comparison with Iba1. The Iba2 structure comprises two central EF-hand motifs lacking bound Ca2+. Iba2 crystallized as a homodimer stabilized by a disulfide bridge and zinc ions. Analytical ultracentrifugation revealed a different mode of dimerization under reducing conditions that was independent of Ca2+. Furthermore, no binding of Ca2+ up to 0.1 mM was detected by equilibrium dialysis. Correspondingly, Iba EF-hand motifs lack residues essential for strong Ca2+ coordination. Sedimentation experiments and microscopy detected pronounced, indistinguishable F-actin binding and cross-linking activity of Iba1 and Iba2 with induction of F-actin bundles. Fluorescent Iba fusion proteins were expressed in HeLa cells and co-localized with F-actin. Iba1 was recruited into cellular projections to a larger extent than Iba2. Additionally, we studied Iba recruitment in a Shigella invasion model that induces cytoskeletal rearrangements. Both proteins were recruited into the bacterial invasion zone and Iba1 was again concentrated slightly higher in the cellular extensions.


Asunto(s)
Proteínas de Unión al Calcio/química , Proteínas de Unión al ADN/química , Proteínas de Microfilamentos/química , Actinas/metabolismo , Secuencia de Aminoácidos , Calcio/metabolismo , Proteínas de Unión al Calcio/análisis , Proteínas de Unión al Calcio/metabolismo , Cristalografía por Rayos X , Proteínas de Unión al ADN/análisis , Proteínas de Unión al ADN/metabolismo , Dimerización , Células HeLa , Humanos , Proteínas de Microfilamentos/análisis , Proteínas de Microfilamentos/metabolismo , Modelos Moleculares , Datos de Secuencia Molecular , Alineación de Secuencia , Shigella/patogenicidad
13.
Structure ; 16(5): 809-17, 2008 May.
Artículo en Inglés | MEDLINE | ID: mdl-18462685

RESUMEN

Human saposins are essential proteins required for degradation of sphingolipids and lipid antigen presentation. Despite the conserved structural organization of saposins, their distinct modes of interaction with biological membranes are not fully understood. We describe two crystal structures of human saposin C in an "open" configuration with unusual domain swapped homodimers. This form of SapC dimer supports the "clip-on" model for SapC-induced vesicle fusion. In addition, we present the crystal structure of SapD in two crystal forms. They reveal the monomer-monomer interface for the SapD dimer, which was confirmed in solution by analytical ultracentrifugation. The crystal structure of SapD suggests that side chains of Lys10 and Arg17 are involved in initial association with the preferred anionic biological membranes by forming salt bridges with sulfate or phosphate lipid headgroups.


Asunto(s)
Saposinas/química , Secuencia de Aminoácidos , Membrana Celular/metabolismo , Clonación Molecular , Secuencia Conservada , Cristalografía por Rayos X , Cisteína/química , Dimerización , Humanos , Interacciones Hidrofóbicas e Hidrofílicas , Metabolismo de los Lípidos , Modelos Biológicos , Modelos Moleculares , Datos de Secuencia Molecular , Mutagénesis , Pichia/genética , Estructura Secundaria de Proteína , Estructura Terciaria de Proteína , Proteínas Recombinantes/química , Proteínas Recombinantes/aislamiento & purificación , Saposinas/genética , Saposinas/aislamiento & purificación , Homología de Secuencia de Aminoácido
14.
Biophys Chem ; 125(1): 159-65, 2007 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-16916573

RESUMEN

The mitochondrial steroid hydroxylase system of vertebrates utilizes adrenodoxin (Adx), a small iron-sulfur cluster protein of about 14 kDa as an electron carrier between a reductase and cytochrome P450. Although the crystal structure of this protein has been elucidated, the solution structure of Adx was discussed contrary in the literature [I.A. Pikuleva, K. Tesh, M.R. Waterman, Y. Kim, The tertiary structure of full-length bovine adrenodoxin suggests functional dimers, Arch. Biochem. Biophys. 373 (2000) 44-55; D. Beilke, R. Weiss, F. Löhr, P. Pristovsek, F. Hannemann, R. Bernhardt, H. Rüterjans, A new electron mechanism in mitochondrial steroid hydroxylase systems based on structural changes upon the reduction of adrenodoxin, Biochemistry 41 (2002) 7969-7978]. Therefore, it was necessary to study the self-association of this protein by using analytical ultracentrifugation over a larger concentration range. As could be demonstrated in sedimentation velocity experiments, as well as sedimentation equilibrium runs with explicit consideration of thermodynamic non-ideality, the full-length protein (residues 1-128) in the oxidized state resulted in a monomer-dimer equilibrium (K(a) approximately 3 x 10(2) M(-1)). For truncated Adx (1-108), as well as the reduced Adx, the association behavior was strongly reduced. The consequences of this behavior are discussed with respect to the physiological meaning for the Adx system.


Asunto(s)
Adrenodoxina/química , Estructura Cuaternaria de Proteína , Oxidación-Reducción , Termodinámica , Ultracentrifugación/métodos
15.
FASEB J ; 20(7): 865-73, 2006 May.
Artículo en Inglés | MEDLINE | ID: mdl-16675844

RESUMEN

In this study we investigated whether the expression of N-terminal myosin light chain-1 (MLC-1) peptides could improve the intrinsic contractility of the whole heart. We generated transgenic rats (TGR) that overexpressed minigenes encoding the N-terminal 15 amino acids of human atrial MLC-1 (TGR/hALC-1/1-15, lines 7475 and 3966) or human ventricular MLC-1 (TGR/hVLC-1/1-15, lines 6113 and 6114) isoforms in cardiomyocytes. Synthetic N-terminal peptides revealed specific actin binding, with a significantly (P<0.01) lower dissociation constant (K(D)) for the hVLC-1/1-15-actin complex compared with the K(D) value of the hALC-1/1-15-actin complex. Using synthetic hVLC-1/1-15 as a TAT fusion peptide labeled with the fluorochrome TAMRA, we observed specific accumulation of the N-terminal MLC-1 peptide at the sarcomere predominantly within the actin-containing I-band, but also within the actin-myosin overlap zone (A-band) in intact adult cardiomyocytes. For the first time we show that the expression of N-terminal human MLC-1 peptides in TGR (range: 3-6 muM) correlated positively with significant (P<0.001) improvements of the intrinsic contractile state of the isolated perfused heart (Langendorff mode): systolic force generation, as well as the rates of both force generation and relaxation, rose in TGR lines that expressed the transgenic human MLC-1 peptide, but not in a TGR line with undetectable transgene expression levels. The positive inotropic effect of MLC-1 peptides occurred in the absence of a hypertrophic response. Thus, expression of N-terminal domains of MLC-1 represent a valuable tool for the treatment of the failing heart.


Asunto(s)
Corazón/fisiología , Contracción Miocárdica/genética , Contracción Miocárdica/fisiología , Cadenas Ligeras de Miosina/química , Cadenas Ligeras de Miosina/metabolismo , Actinas , Animales , Animales Modificados Genéticamente , Regulación de la Expresión Génica , Terapia Genética , Humanos , Masculino , Miocitos Cardíacos/metabolismo , Cadenas Ligeras de Miosina/genética , Unión Proteica , Ratas , Ratas Endogámicas WKY
16.
Biochemistry ; 45(8): 2618-28, 2006 Feb 28.
Artículo en Inglés | MEDLINE | ID: mdl-16489755

RESUMEN

SorLA/LR11 is a sorting receptor that regulates the intracellular transport and processing of the amyloid precursor protein (APP) in neurons. SorLA/LR11-mediated binding results in sequestration of APP in the Golgi and in protection from processing into the amyloid-beta peptide (Abeta), the principal component of senile plaques in Alzheimer's disease (AD). To gain insight into the molecular mechanisms governing sorLA and APP interaction, we have dissected the respective protein interacting domains. Using a fluorescence resonance energy transfer (FRET) based assay of protein proximity, we identified binding sites in the extracellular regions of both proteins. Fine mapping by surface plasmon resonance analysis and analytical ultracentrifugation of recombinant APP and sorLA fragments further narrowed down the binding domains to the cluster of complement-type repeats in sorLA that forms a 1:1 stoichiometric complex with the carbohydrate-linked domain of APP. These data shed new light on the molecular determinants of neuronal APP trafficking and processing and on possible targets for intervention with senile plaque formation in patients with AD.


Asunto(s)
Precursor de Proteína beta-Amiloide/metabolismo , Proteínas de Transporte de Membrana/metabolismo , Neuronas/metabolismo , Transporte de Proteínas/fisiología , Receptores de LDL/metabolismo , Precursor de Proteína beta-Amiloide/química , Encéfalo/metabolismo , Células Cultivadas , Humanos , Proteínas Relacionadas con Receptor de LDL , Proteínas de Transporte de Membrana/química , Microscopía Confocal , Modelos Biológicos , Unión Proteica , Estructura Terciaria de Proteína , Transporte de Proteínas/genética , Receptores de LDL/química , Resonancia por Plasmón de Superficie , Factores de Tiempo , Transfección
17.
BMC Struct Biol ; 5: 21, 2005 Dec 14.
Artículo en Inglés | MEDLINE | ID: mdl-16354304

RESUMEN

BACKGROUND: Human Aortic Preferentially Expressed Protein-1 (APEG-1) is a novel specific smooth muscle differentiation marker thought to play a role in the growth and differentiation of arterial smooth muscle cells (SMCs). RESULTS: Good quality crystals that were suitable for X-ray crystallographic studies were obtained following the truncation of the 14 N-terminal amino acids of APEG-1, a region predicted to be disordered. The truncated protein (termed DeltaAPEG-1) consists of a single immunoglobulin (Ig) like domain which includes an Arg-Gly-Asp (RGD) adhesion recognition motif. The RGD motif is crucial for the interaction of extracellular proteins and plays a role in cell adhesion. The X-ray structure of DeltaAPEG-1 was determined and was refined to sub-atomic resolution (0.96 A). This is the best resolution for an immunoglobulin domain structure so far. The structure adopts a Greek-key beta-sandwich fold and belongs to the I (intermediate) set of the immunoglobulin superfamily. The residues lying between the beta-sheets form a hydrophobic core. The RGD motif folds into a 310 helix that is involved in the formation of a homodimer in the crystal which is mainly stabilized by salt bridges. Analytical ultracentrifugation studies revealed a moderate dissociation constant of 20 microM at physiological ionic strength, suggesting that APEG-1 dimerisation is only transient in the cell. The binding constant is strongly dependent on ionic strength. CONCLUSION: Our data suggests that the RGD motif might play a role not only in the adhesion of extracellular proteins but also in intracellular protein-protein interactions. However, it remains to be established whether the rather weak dimerisation of APEG-1 involving this motif is physiologically relevant.


Asunto(s)
Proteínas Musculares/fisiología , Secuencias de Aminoácidos , Secuencia de Aminoácidos , Arterias/metabolismo , Biofisica/métodos , Adhesión Celular , Clonación Molecular , Cristalografía por Rayos X , Bases de Datos de Proteínas , Dimerización , Escherichia coli/metabolismo , Humanos , Inmunoglobulinas/química , Cinética , Lisina/química , Modelos Moleculares , Datos de Secuencia Molecular , Proteínas Musculares/química , Miocitos del Músculo Liso/metabolismo , Oligopéptidos/química , Unión Proteica , Conformación Proteica , Ingeniería de Proteínas , Proteínas Serina-Treonina Quinasas , Estructura Cuaternaria de Proteína , Estructura Secundaria de Proteína , Estructura Terciaria de Proteína , Homología de Secuencia de Aminoácido , Ultracentrifugación
18.
FASEB J ; 19(14): 1969-77, 2005 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-16319140

RESUMEN

Defective L-type Ca2+ channel (I(CaL)) regulation is one major cause for contractile dysfunction in the heart. The I(CaL) is enhanced by sympathetic nervous stimulation: via the activation of beta-adrenergic receptors, PKA phosphorylates the alpha1C(Ca(V)1.2)- and beta2-channel subunits and ahnak, an associated 5643-amino acid (aa) protein. In this study, we examined the role of a naturally occurring, genetic variant Ile5236Thr-ahnak on I(CaL). Binding experiments with ahnak fragments (wild-type, Ile5236Thr mutated) and patch clamp recordings revealed that Ile5236Thr-ahnak critically affected both beta2 subunit interaction and I(CaL) regulation. Binding affinity between ahnak-C1 (aa 4646-5288) and beta2 subunit decreased by approximately 50% after PKA phosphorylation or in the presence of Ile5236Thr-ahnak peptide. On native cardiomyocytes, intracellular application of this mutated ahnak peptide mimicked the PKA-effects on I(CaL) increasing the amplitude by approximately 60% and slowing its inactivation together with a leftward shift of its voltage dependency. Both mutated Ile5236Thr-peptide and Ile5236Thr-fragment (aa 5215-5288) prevented specifically the further up-regulation of I(CaL) by isoprenaline. Hence, we suggest the ahnak-C1 domain serves as physiological brake on I(CaL). Relief from this inhibition is proposed as common pathway used by sympathetic signaling and Ile5236Thr-ahnak fragments to increase I(CaL). This genetic ahnak variant might cause individual differences in I(CaL) regulation upon physiological challenges or therapeutic interventions.


Asunto(s)
Canales de Calcio Tipo L/fisiología , Proteínas de la Membrana/fisiología , Proteínas de Neoplasias/fisiología , Receptores Adrenérgicos beta/metabolismo , Animales , Calcio/química , Canales de Calcio Tipo L/química , Canales de Calcio Tipo L/metabolismo , Cardiomiopatía Hipertrófica/genética , Proteínas Quinasas Dependientes de AMP Cíclico/química , Proteínas Quinasas Dependientes de AMP Cíclico/metabolismo , Relación Dosis-Respuesta a Droga , Electrofisiología , Femenino , Regulación de la Expresión Génica , Variación Genética , Glutatión Transferasa/metabolismo , Heterocigoto , Humanos , Isoleucina/química , Masculino , Proteínas de la Membrana/genética , Modelos Biológicos , Modelos Genéticos , Mutación , Mutación Missense , Miocardio/metabolismo , Miocitos Cardíacos/metabolismo , Proteínas de Neoplasias/genética , Péptidos/química , Fosforilación , Polimorfismo Genético , Polimorfismo Conformacional Retorcido-Simple , Unión Proteica , Estructura Terciaria de Proteína , Ratas , Ratas Wistar , Proteínas Recombinantes/química , Programas Informáticos , Temperatura , Treonina/química , Ultracentrifugación , Regulación hacia Arriba
19.
Biol Chem ; 386(9): 881-94, 2005 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-16164413

RESUMEN

The dimeric regulatory protein wild-type omega (wt omega2) binds to arrays of 7-bp sequences (heptads) present in the operator DNA region of copy control and partition functions of plasmid pSM19035. Each omega2 protein probably binds with an antiparallel beta-sheet structure in the major groove of the 7-bp subsite of the operator DNA. Exchange of threonine at position 29 to alanine (T29A) drastically affects the activity of variant protein omega2T29A both in vivo and in vitro, and reduces the thermodynamic stability deltaG(o)u, but does not change the conformation. Likewise, the binding affinity to DNA is reduced and the association of the two monomeric subunits of the omega2T29A dimer is weakened, as manifested by an increase in the dissociation constant from 3.2 microM for wt omega2 to 6.3 microM for omega2T29A. Denatured dimers are formed upon thermal unfolding of wt omega2 and omega2T29A at ca. 45 microM (D(n)<-->D(u)). Removal of 8 (omega2deltaN8), or even 18 (omega2deltaN18) N-terminal amino acids has no obvious effect either on the core structure or on the activity in comparison to wt omega2. The stability of variants omega2deltaN8 and omega2deltaN18 is similar to that of wt omega2, and their binding to operator DNA is not impaired.


Asunto(s)
Proteínas Bacterianas/metabolismo , Proteínas de Unión al ADN/metabolismo , Plásmidos/genética , Proteínas Represoras/metabolismo , Streptococcus pyogenes/genética , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Rastreo Diferencial de Calorimetría , Dicroismo Circular , Huella de ADN , ADN Bacteriano/metabolismo , Proteínas de Unión al ADN/química , Proteínas de Unión al ADN/genética , Modelos Moleculares , Regiones Operadoras Genéticas , Unión Proteica , Desnaturalización Proteica , Pliegue de Proteína , Estructura Secundaria de Proteína , Proteínas Represoras/química , Proteínas Represoras/genética , Streptococcus pyogenes/metabolismo , Relación Estructura-Actividad , Termodinámica , Treonina/química , Treonina/metabolismo , Urea/química
20.
Proc Natl Acad Sci U S A ; 102(38): 13461-6, 2005 Sep 20.
Artículo en Inglés | MEDLINE | ID: mdl-16174740

RESUMEN

sorLA (Sorting protein-related receptor) is a type-1 membrane protein of unknown function that is expressed in neurons. Its homology to sorting receptors that shuttle between the plasma membrane, endosomes, and the Golgi suggests a related function in neuronal trafficking processes. Because expression of sorLA is reduced in the brain of patients with Alzheimer's disease (AD), we tested involvement of this receptor in intracellular transport and processing of the amyloid precursor protein (APP) to the amyloid beta-peptide (Abeta), the principal component of senile plaques. We demonstrate that sorLA interacts with APP in vitro and in living cells and that both proteins colocalize in endosomal and Golgi compartments. Overexpression of sorLA in neurons causes redistribution of APP to the Golgi and decreased processing to Abeta, whereas ablation of sorLA expression in knockout mice results in increased levels of Abeta in the brain similar to the situation in AD patients. Thus, sorLA acts as a sorting receptor that protects APP from processing into Abeta and thereby reduces the burden of amyloidogenic peptide formation. Consequently, reduced receptor expression in the human brain may increase Abeta production and plaque formation and promote spontaneous AD.


Asunto(s)
Precursor de Proteína beta-Amiloide/metabolismo , Endosomas/metabolismo , Aparato de Golgi/metabolismo , Proteínas de Transporte de Membrana/metabolismo , Placa Amiloide/metabolismo , Procesamiento Proteico-Postraduccional , Receptores de LDL/metabolismo , Enfermedad de Alzheimer/metabolismo , Animales , Encéfalo/metabolismo , Células CHO , Cricetinae , Cricetulus , Humanos , Proteínas Relacionadas con Receptor de LDL , Proteínas de Transporte de Membrana/genética , Ratones , Ratones Noqueados , Transporte de Proteínas , Receptores de LDL/genética
SELECCIÓN DE REFERENCIAS
DETALLE DE LA BÚSQUEDA