Experimental and theoretical structural investigation of an ionic Nd coordination polymer.

Research concerning coordination polymers has been intense due to their significant variability and structural stability. With this in mind, an ionic neodymium coordination polymer was synthesized, composed of an anionic one-dimensional polymer interconnected to a cationic three-dimensional porous polymer, poly[dodecaaquabis(µ-pyridine-4-carbohydrazide-κ2N:O)bis(µ2-4-sulfobenzoato-κ2O:O')bis(µ3-4-sulfobenzoato-κ3O:O':O'')trineodymium(III)] catena-poly[aquabis(µ-pyridine-4-carbohydrazide-κ2N:O)bis(µ2-4-sulfobenzoato-κ2O:O')neodymium(III)] 4.33-hydrate, {[Nd3(C7H4O5S)4(C6H7N3O)2(H2O)12][Nd(C7H4O5S)2(C6H7N3O)2(H2O)]·4.33H2O}n. The ligands used were 4-sulfobenzoate (PSB) and pyridine-4-carbohydrazide, popularly known as isoniazid (INH), an antibiotic drug. The compound crystallizes in the monoclinic space group C2/c, with Z = 4. Solid-state calculations suggest that the crystal structure is mainly stabilized by hydrogen bonds, i.e. O-H...O and N-H...O interactions among the polymers, and by van der Waals interactions involving the organic side chains. This net is tetragonal, 2-nodal 3,4-connected, and can be described as the dmd (sqc 528) type.

Structural, Electronic, and Thermodynamic Properties of the T and B Phases of Niobia: First-Principle Calculations.

Different polymorphs of Nb2O5 can be obtained depending on the pressure and temperature of calcination leading to different catalytic properties. Two polymorphs of niobia, T-Nb2O5 and B-Nb2O5, have been investigated by means of density functional/plane waves method. The equation of state predicted that B-Nb2O5 phase is more stable than the T-Nb2O5 at low temperature; however at high pressure both phases are stable. These results are in good agreement with the available experimental data. The calculated cohesive energies of 6.63 and 6.59 eV·atom-1 for the B-Nb2O5 and T-Nb2O5, respectively, also corroborate this conclusion, and it can be compared to the experimental value of 9.56 eV atom-1 estimated for the most thermodynamically stable phase. The topological analyses based on quantum theory of atoms in molecules (QTAIM) and electron localization function (ELF) were applied and reveal bonds with large ionic character for both phases. The B-Nb2O5 presented larger stiffness than T-Nb2O5, and the oxygen sites in the T-Nb2O5 are more compressible. The density of states comparison for both structures indicates that B-Nb2O5 has lower concentration of acid sites compared to T-Nb2O5. This result is consistent with the experimental observations that the concentration of Lewis acid sites decreases with the temperature.

First-principles calculations and electron density topological analysis of covellite (CuS).

Covellite (CuS) is an important mineral sulfide that can be used in many technological applications. It has a simple formula but a complex structure consisting of alternating layers of planar CuS3 triangles and CuS4 tetrahedrons with S-S bonds. Accurate first-principles calculations are performed for covellite structure (CuS), aiming to provide insights about its structural, mechanical and electronic properties and to unveil the nature of its chemical bonding. DFT and DFT+U methods have been used and showed to be sensitive to the correlation treatment (U value). Although it is not possible to extract a universal value of the U, this study indicates that U = 5 eV is an adequate value. The electronic structure analysis shows a significant metallic character due to p(S)-d(Cu) orbital interactions up to Fermi level. The projected density of states indicates that most of the contribution comes from the atomic orbitals in the [001] plane of the covellite, explaining the conductivity anisotropy observed experimentally. Topological analysis of the electron density was performed by means of quantum theory of atoms in molecules (QTAIM). Two different topological charges in Cu and S were calculated, confirming an ionic model with mix-charges. This mineral presents ionic degree of ∼ 32%. On the basis of the QTAIM analysis, the covalent character of S-S bond is confirmed, and the favored cleavage of CuS at the [001] surface might be at the Cu-S bond. The S atoms occupy most of the cell volume, and their contributions dominate the crystal compressibility: κ(S) ≈ κ(CuS).

Solid-state experimental and theoretical investigation of the ammonium salt of croconate violet, a pseudo-oxocarbon ion.

The present work describes the crystal structure, vibrational spectra, and theoretical calculations of ammonium salts of 3,5-bis-(dicyanomethylene)cyclopentane-1,2,4-trionate, (NH(4))(2)(C(11)N(4)O(3)) [(NH(4))(2)CV], also known as ammonium croconate violet. This compound crystallizes in triclinic P1 and contains two water molecules per unit formula. The crystal packing is stabilized by hydrogen bonds involving water molecules and ammonium cations, giving rise to a 3D polymeric arrangement. In this structure, a pi-stacking interaction is not observed, as the smaller centroid-centroid distance is 4.35 A. Ab initio electronic structure calculations under periodic boundary conditions were performed to predict vibrational and electronic properties. The vibrational analysis was used to assist the assignments of the Raman and infrared bands. The solid structure was optimized and characterized as a minimum in the potential-energy surface. The stabilizing intermolecular hydrogen bonds in the crystal structure were characterized by difference charge-density analysis. The analysis of the density of states of (NH(4))(2)CV gives an energy gap of 1.4 eV with a significant contribution of carbon and nitrogen 2p states for valence and conduction bands.

Antioxidant activity of (+)-bergenin: a phytoconstituent isolated from the bark of Sacoglottis uchi Huber (Humireaceae).

(+)-Bergenin (1) was isolated from Sacoglottis uchi, a species of vegetable found in the Amazon region and popularly used for the treatment of several hepatic problems. The structure of 1 was fully characterized using IR, GC-MS and NMR (1D and 2D) analyses. This phytoconstituent has been used as an oriental folk medicine for the treatment of many diseases and shows antihepatotoxic properties. Tests with beta-carotene, DPPH and a heterogeneous Fenton system were carried out, confirming the antioxidant activity of 1. Theoretical calculations were performed to investigate the formation of the radical derivatives of 1 using *H, *OH, *CH(3), and *CCl(3) as initiator radicals. DFT thermodynamic calculations showed that the methoxyl group (O-6-CH(3)) is the most favorable site for radical attack. Frontier molecular orbital analysis showed that nucleophilic radical attack is favored on the aromatic ring of 1 where the LUMO is localized, with antibonding character with respect to the O-6-CH(3) bond. The possibilities of attack at other sites on 1 were investigated in detail in order to understand the regiospecificity of this reaction.

Vibrational spectra of Na, K, Mn2+, Ni2+ and Zn2+ salts of 1,2,4,5-benzenetetracarboxylic (pyromellitic) acid--a short hydrogen bond evidence.

Five salts of 1,2,4,5-benzenetetracarboxylic acid (pyromellitic acid), [C6H2(COO)4H4], have been synthesized and investigated by infrared and Raman spectroscopy and by single crystal X-ray diffraction methods: sodium salt [Na2(H2O)2][C6H2(COO)4H2], potassium salt [K(H2O)3][C6H2(COO)4H3] and transition metal salts [M(H2O)6][C6H2(COO)4H2], which M = Mn, Ni and Zn. Crystal structures of all five compounds show short intramolecular asymmetric hydrogen bonds (SHB) between adjacent carboxyl groups with O...O distance average of 2.40 A. The Raman and infrared spectra reported indicate the presence of short hydrogen bonds in all salts, in agreement with the X-ray data. The O-H stretching mode [nu(OH)] had been observed at about 2500 cm(-1). Deuterated analogues were synthesized and their Raman spectra show that nu(OH)/nu(OD) ratio average is about unit. The symmetric [nu(sym)(O..H..O)] and asymmetric [nu(asym)(O..H..O)] stretching modes have been attributed about 300 and 870 cm(-1), respectively, in all salts, and for deuterated analogues, the ratio nu(OH)/nu(OD) to nu(sym)(O..H..O, O..D..O) is close to unit like it occurs in nu(OH). The vibrational modes, mainly SHB modes, are tentatively assigned by molecular orbital ab initio calculations of pyromellitic acid and anions [C6H2(COO)4H3]- and [C6H2(COO)4H2]2-. Geometry optimizations showed a good agreement with experimental data. Frequency calculation confirms the assignment of specific vibrational modes. Ab initio calculations show that nu(C=O) and nu(sym)(COO) are strongly coupled with in plane OH bending [delta(OH)]. In Raman spectra of deuterated analogues is observed a frequency shift of these bands.