Bacterial diversity and resistome analysis of drinking water stored in cisterns from two First Nations communities in Manitoba, Canada.

The microbiological content of water is an ongoing concern in First Nations communities in Canada. Many communities lack water treatment plants and continue to be under drinking water advisories. However, lack of access to treatment plants is only a part of the problem as poor water distribution systems also contribute to the failure to provide safe drinking water. Here, we studied the microbial diversity and antibiotic resistome from water stored in cisterns from two First Nations communities in Manitoba, Canada. We found that the cistern water contained a high number of bacteria and showed the presence of diverse antimicrobial resistance genes. Interestingly, the bacterial diversity and antimicrobial resistance genes varied considerably from that of the untreated source water, indicating that the origin of contamination in the cistern water came from within the treatment plant or along the delivery route to the homes. Our study highlights the importance of proper maintenance of the water distribution system in addition to access to water treatment facilities to ensure a supply of safe water to First Nations communities in Canada.IMPORTANCEThe work described addresses a critical issue in First Nations communities in Canada-the microbiological content of water. Many of these communities lack access to water treatment plants and frequently experience drinking water advisories. This study focused on the microbial diversity and antibiotic resistome in water stored in cisterns within two First Nations communities in Manitoba, Canada. These findings reveal that cistern water, a common source of drinking water in these communities, contains a high number of bacteria and a wide range of antimicrobial resistance genes. This highlights a serious health risk as exposure to such water can lead to the spread of drug-resistant infections, posing a threat to the well-being of the residents.

Quantitation of glyphosate, glufosinate, and AMPA in drinking water and surface waters using direct injection and charged-surface ultra-high performance liquid chromatography-tandem mass spectrometry.

Herbicides glyphosate (N-(phosphonomethyl)glycine) and glufosinate (2-amino-4-(hydroxymethylphosphinyl)butanoic acid) and the main transformation product of glyphosate, aminomethanephosphonic acid (AMPA), are challenging to analyze for in environmental samples. The quantitative method developed by this study adapts previously standardized dechlorination procedures coupled to a novel charged surface C18 column, ultra-high performance liquid chromatography-tandem mass spectrometry, polarity switching, and direct injection. The method was applied to chlorinated tap water, as well as river samples, collected in the City of Winnipeg and rural Manitoba, Canada. Using only syringe filtration without derivatization, the validated method resulted in good accuracies in both tap and surface water, at both 2 and 20 µg L-1. Method limits of detection (MLD) and quantification (MLQ) ranged from 0.022/0.074 to 0.11/0.36 µg L-1, with precisions of 0.46-2.2% (intraday) and 1.3-7.3% (interday). The mean (SEM) of the pesticides in µg L-1 for tap water were 0.11 (0.007) (AMPA), glufosinate and glyphosate < MLDs; and for Red River water were 0.56 (0.045) (AMPA), glufosinate < MLQ, and glyphosate 0.40 (0.072). For the smaller tributaries, glufosinate was >MLD but < MLQ once and that was for Shannon Creek at 0.2 µg L-1. For the remaining rivers, the mean concentrations ranged from 0.31 to 3.1 µg L-1 for AMPA, and 0.087-0.53 µg L-1 for glyphosate. The method will be ideal for supporting monitoring and risk assessment programs that require high throughput sampling and quantitative methods capable of producing robust results that leverages chromatographic and mass spectrometric paradigms instead of being extraction technology focused.

Quantitation of Canadian organic ultraviolet filters using polarity switching and ultra-high performance liquid chromatography-tandem mass spectrometry.

Ultraviolet filters (UVFs) absorb UV light and are comprised of numerous classes of compounds including inorganic and organic. They have been used for decades in protecting humans from skin damage and cancer. Recent studies have shown that UVFs are found in many phases of abiotic and biotic systems with their physical-chemical characteristics determining environmental fate and potential biological impacts such as bioaccumulation. This study developed a unified method to quantify eight UVFs (avobenzone, dioxybenzone, homosalate, octinoxate, octisalate, octocrylene, oxybenzone, and sulisobenzone) by solid phase extraction and ultra-high performance liquid chromatography-tandem mass spectrometry using polarity switching. The validated method resulted in accuracies ranging from 75 to 112%, MLD/MLQs of 0.00015/ 0.00049 to 0.0020/ 0.0067 ng mL-1, and precisions of 1.8 to 22.6% (intraday) and 1.3 to 17.2% (interday). The method was applied to chlorinated outdoor pool waters in the City of Winnipeg, Manitoba, Canada. This method could be adapted for a variety of chlorinated and unchlorinated waters such as drinking water, wastewater, and surface waters.

Trihalomethanes in drinking water from three First Nation reserves in Manitoba, Canada.

Previous research indicates that the water distribution system used has a significant impact on the microbial quality of tap water sampled in First Nations reserves in Canada. This study tested tap water from homes in three First Nations reserves to compare the concentrations of four trihalomethanes and related water quality parameters between homes receiving piped water from a water treatment plant (WTP) versus homes equipped with cisterns that are filled by a water truck. Of all the samples collected across time from household taps, 75% of piped samples and 70% of cistern samples had TTHM concentrations exceeding Health Canada's maximum acceptable concentration (MAC) of 100 µg L-1 total trihalomethanes (TTHMs) in treated water. In all communities and across sampling times, trichloromethane (CHCl3) was the dominant trihalomethane (42-96%) followed by bromodichloromethane (CHBrCl2) (3-37%) and dibromochloromethane (CHClBr2) (1-18%). Tribromomethane (CHBr3) always accounted for < 5% of TTHMs. Within each of the three First Nations reserves, the water distribution system had no significant effect on TTHM concentration at the household level. Sampling month had a significant effect on TTHM concentration due to temporal changes in dissolved organic carbon of the source water. Results suggest that families in the studied First Nations reserves receive drinking water with high TTHM concentrations and that improvements to the water treatment plant might be the most effective way to minimize trihalomethane formation.

Quantitative Assessment of First Nations Drinking Water Distribution Systems for Detection and Prevalence of Thermophilic Campylobacter Species.

Water is considered a major route for transmitting human-associated pathogens. Although microbial water quality indicators are used to test for the presence of waterborne pathogens in drinking water, the two are poorly correlated. The current study investigates the prevalence of thermophilic DNA markers specific for Campylobacter spp. (C. jejuni and C. coli) in source water and throughout the water distribution systems of two First Nations communities in Manitoba, Canada. A total of 220 water samples were collected from various points of the drinking water distribution system (DWDS) between 2016 and 2018. Target Campylobacter spp. were always (100%) detected in a home with a fiberglass (CF) cistern, as well as the community standpipe (SP). The target bacteria were also frequently detected in treated water at the Water Treatment Plant (WTP) (78%), homes with polyethylene (CP) (60%) and concrete (CC) (58%) cisterns, homes with piped (P) water (43%) and water truck (T) samples (20%), with a maximum concentration of 1.9 × 103 cells 100 mL-1 (C. jejuni) and 5.6 × 105 cells 100 mL-1 (C. coli). Similarly, target bacteria were detected in 68% of the source water samples with a maximum concentration of 4.9 × 103 cells 100 mL-1 (C. jejuni) and 8.4 × 105 cells 100 mL-1 (C. coli). Neither target Campylobacter spp. was significantly associated with free and total chlorine concentrations in water. The study results indicate that there is an immediate need to monitor Campylobacter spp. in small communities of Canada and, particularly, to improve the DWDS in First Nations communities to minimize the risk of Campylobacter infection from drinking water sources. Further research is warranted in improving/developing processes and technologies to eliminate microbial contaminants from water.

Using the Pesticide Toxicity Index to show the potential ecosystem benefits of on-farm biobeds.

The influent and effluent of two single-cell biobeds (Province of Alberta, Canada) and two dual cell-biobeds (Province of Saskatchewan, Canada) were monitored during a number of growing seasons. A total of 59 unique pesticide active ingredients were detected, with all biobed influent samples (n = 54) and 93% of effluent samples (n = 54) containing pesticide mixtures. About one-half of the effluent samples in both single-cell (56%) and dual-cell (45%) biobeds contained active ingredients that have Groundwater Ubiquity Score (GUS) values >2.8 and so were more likely to move through the biomatrix materials into effluent. The Pesticide Toxicity Index (PTI) calculated for aquatic indicator species (i.e., vascular and nonvascular plants, invertebrates, and fish) was always larger for influent samples (e.g., median PTI >500 for invertebrates in dual-cell biobed) than effluent samples (i.e., median PTI <1). As such, this study demonstrates the potential ecosystem benefits of the broad adoption of on-farm biobeds in the Canadian Prairies for recycling tank rinsate as a strategy to accelerate a green economy. Although biobeds were highly effective in reducing the concentrations for pesticides with a wide range of soil organic carbon coefficient and half-life values, the biobed effectiveness was relatively poor for the herbicides clopyralid, diclofop, fluroxypyr, and imazethapyr. Clopyralid (3.02), fluroxypyr (3.70), and imazethapyr (3.90) all have relatively high GUS values (>2.8) and are thus more likely to be detected in effluent than active ingredients with smaller GUS values. This suggests that further improvements in biosystem design need to be made for optimizing the recycling of these pesticides.

Both single-cell and dual-cell biobeds performed remarkably in colder climates (Canadian Prairies). Pesticides detected in effluents were more likely to be pesticides that have greater GUS values. The Pesticide Toxicity Index (PTI) was drastically smaller for biobed effluent than for influent. The broad adoption of biobeds for recycling tank rinsate will contribute to a green economy. The biobed system design must be refined to broaden its effectiveness to treat all pesticides.

Relative proportions of organic carbon functional groups in biochars as influenced by spectral data collection and processing.

Solid-state 13C Nuclear Magnetic Resonance (NMR) and synchrotron-based X-ray Absorption Near-Edge Structure (XANES) have applications for determining the relative proportions of organic C functional groups in materials. Spectral data obtained by NMR is typically processed using integration (INTEG) whereas XANES spectral data is typically processed using deconvolution (DECONV). The objective of this study was to examine the impact of spectral data collection and processing on the estimated relative proportions of organic C functional groups in biochars. Biochars showed large variations in aromatic C (45-97%), alkyl C (0-23%), O-alkyl C (1-41%), phenolic C (0-20%) and carboxylic C (0-20%). NMR had a better ability than XANES to differentiate % aromatic C across biochars, and the mean % aromatic C was always greater for NMR-INTEG and NMR-DECONV than for XANES-INTEG or XANES-DECONV. NMR-INTEG showed significant associations with NMR-DECONV and XANES-INTEG for % aromatic C and alkyl C, but there were no significant associations between NMR and XANES for % O-alkyl C, phenolic C and carboxylic C. As well, there was no association between NMR-INTEG and XANES-DECONV for any organic C functional group, and in some cases, spectral data collection and processing influenced the quantification of organic C functional groups in a given biochar to the extent that the differences observed were as large as differences observed between biochars when analyzed using the same spectral data collection and processing technique. We conclude that great caution must be taken when comparing studies that determined organic C functional groups in materials using NMR-INTEG versus XANES-DECONV.

Water delivery system effects on coliform bacteria in tap water in First Nations reserves in Manitoba, Canada.

About one-half of the homes on First Nations (FN) reserves in Manitoba, Canada, receive piped water from a water treatment plant (WTP). Many other homes (31%) are equipped with cisterns that are filled by a water truck, and our objective was to determine how the use of cisterns affects drinking water safety relative to drinking water piped directly to homes from the WTP. The study included belowground concrete cisterns, belowground fiberglass cisterns, and aboveground polyethylene cisterns stored in insulated shelters, and all the data collection methods showed that the tap water in homes with cisterns were relatively more contaminated with coliform bacteria than the tap water in piped homes. The frequency and severity of Escherichia coli and total coliform contamination were numerically greater in drinking water samples from belowground concrete and fiberglass cisterns than in piped water samples in each community, and the contamination of belowground cisterns by coliform bacteria was greatest in late spring. As well, data obtained under the Access to Information Act showed no statistical differences in the percent of satisfactory samples (no detects) between 2014 and 2018, suggesting no clear indication of improved water quality in any of the Tribal Councils in which these three and other communities are a member off. Our results point to the need for additional treatment of drinking water in homes supplied by belowground concrete or fiberglass cisterns and replacement of belowground cisterns with aboveground cisterns or piped water to reduce the risk of water-borne illnesses.

Pesticide Mixtures in the Water-Column Versus Bottom-Sediments of Prairie Rivers.

River water-column and bottom-sediments samples were screened for 160 pesticide compounds to compare the types of pesticides present in the water-column versus bottom-sediments, and between segments of rivers flowing through intensively-managed versus semi-natural habitats. Of the 35 pesticide compounds detected, current-use pesticides accounted for 96% (water) and 76% (bottom sediments). Pesticide mixtures were present in 72% (water) and 51% (sediment) of the total samples. Only the river flowing through the most intensively managed habitat showed a wide range of pesticides in sediments, and many of these pesticides were also present in the water-column of that river. Current-use fungicides were detected in both the water-column and bottom-sediments but not in samples taken from rivers flowing predominantly through semi-natural habitats. The study period (May to August) corresponds to the peak time of regional pesticide applications and hence the time period that is most likely to show elevated concentrations of current-use pesticides in the water-column. The environmental concentrations of pesticide mixtures detected in the water-column were used to calculate Pesticide Toxicity Index (PTI) values as it applies to non-vascular or vascular plants, invertebrates, and fish. The PTI values were largest for non-vascular and vascular plants, reflecting that the pesticide mixtures in water-column were dominated by herbicides.

Phytoextraction of ciprofloxacin and sulfamethoxaxole by cattail and switchgrass.

Cattail (Typha latifolia L.) and switchgrass (Panicum virgatum L.) can effectively remove inorganic contaminants from soils and biosolids, but their role in the attenuation of organic contaminants, such as antimicrobials, is currently poorly understood. Uptake by plants is one of several mechanisms by which plant-assisted attenuation of antimicrobials can be achieved. The objectives of this growth room study were to evaluate the plant uptake of ciprofloxacin (CIP) and sulfamethoxazole (SMX) and examine their partitioning between plant roots and aboveground biomass (AGB). Plant uptake of the two 14C labeled antimicrobials was studied at two environmentally relevant concentrations (5 and 10 µg L-1). Plants were destructively sampled every 3-4 d during the 21-d growth period. Accumulation of CIP and SMX in both plant species was greater in the roots than in the AGB. The percentage uptake values of the two antimicrobials were significantly greater for cattail (34% for CIP, 20% for SMX) than for switchgrass (10% for both CIP and SMX). Translocation factors of the two antimicrobials were <1 for both plants, indicating slow movement of the antimicrobials from the roots to the shoots. For cattail roots, the BCF for CIP (1.58 L g-1) was significantly greater than that for SMX (0.8 L g-1). By comparison, BCFs for switchgrass roots did not differ significantly between CIP (0.88 L g-1) and SMX (1.13 L g-1). These results indicate greater potential for cattail to phytoextract CIP and SMX and significantly contribute to the attenuation of these antimicrobials in systems designed for the phytoremediation of contaminated wastewater.

Complete Genome Sequences of Two Environmental Legionella Isolates Obtained from Potable Water Sourced in a First Nation Community.

Here, we report the complete genome sequences of two distinct isolates of Legionella that were obtained from potable water sourced from cistern-bearing homes within a First Nation community in Manitoba, Canada.

Dissipation of sulfamethoxazole and trimethoprim during temporary storage of biosolids: A microcosm study.

Little is known about the dissipation rate of microcontaminants in biosolids during storage and stabilization in stockpiles (unsaturated) or storage lagoons/tanks (saturated). The objective of this study was to characterize the dissipation in biosolids of two antibiotics, sulfamethoxazole (SMX) and trimethoprim (TMP), in microcosms under saturated and unsaturated conditions that simulate biosolids that are stockpiled on land or deposited in lagoons/tanks, respectively. The laboratory experiment was conducted at 22 °C using biosolids spiked at an initial nominal concentration of 10 mg kg-1 for both antibiotics. Biosolids were sampled in triplicate at seven sampling times over a 42-d period. Concentrations of SMX and TMP in extracts prepared from biosolids were quantified using liquid chromatography with tandem mass spectrometry. Dissipation data fitted to a first-order kinetic model indicated that the time to 50% dissipation (DT50) for SMX was significantly shorter in the unsaturated microcosms (2.8 d) than the saturated microcosms (4.4 d), while the DT50 for TMP was significantly shorter in microcosms under saturated conditions (10 d) relative to unsaturated conditions (116 d). These results indicate that the reducing conditions that develop in biosolids deposited in lagoons or placed in storage tanks might be effective for enhancing the microbial degradation of antibiotics that are otherwise persistent under aerobic conditions (i.e., TMP), while also being effective for removing other antibiotics including those that dissipate relatively readily under aerobic conditions (i.e., SMX).

Sulfamethoxazole sorption by cattail and switchgrass roots.

Sorption to roots is one of several mechanisms by which plant-assisted attenuation of antibiotics can be achieved. The objectives of this study were to (1) evaluate the sorption of sulfamethoxazole (SMX) by cattail and switchgrass roots, (2) determine the kinetics of SMX sorption by cattail and switchgrass roots, and (3) characterize the temperature-dependency of SMX sorption. A batch sorption experiment was conducted to measure SMX sorption by roots of the two plant species using five initial antibiotic concentrations (2.5, 5, 10, 15, and 20 µg L-1) and eight sampling times (0, 0.5, 1, 2, 4, 8, 12, and 24 h). Another batch experiment was conducted at three temperatures (5, 15, and 25 °C) to determine the effect of temperature on sorption kinetics. SMX sorption followed pseudo-second-order kinetics. The pseudo-second-order rate constant (k2) decreased with increasing temperature for both plant species. The rate constant followed the order: 5 °C = 15 °C > 25 °C for cattail and 5 °C > 15 °C = 25 °C for switchgrass. Results from this study show that switchgrass roots are more effective than cattail roots in the removal of SMX. Therefore, the use of switchgrass in systems designed for phytoremediation of contaminants might also provide an efficient removal of some antibiotics.

Detection of fecal bacteria and antibiotic resistance genes in drinking water collected from three First Nations communities in Manitoba, Canada.

This study analyzed the microbiological quality of drinking and source water from three First Nations communities in Manitoba, Canada that vary with respect to the source, storage and distribution of drinking water. Community A relies on an aquifer and Community B on a lake as source water to their water treatment plants. Community C does not have a water treatment plant and uses well water. Quantification of free residual chlorine and fecal bacterial (E. coli and coliforms), as well as detection of antibiotic resistance genes (sul, ampC, tet(A), mecA, vanA, blaSHV, blaTEM, blaCTX-M, blaOXA-1, blaCYM-2, blaKPC, blaOXA-48, blaNDM, blaVIM, blaGES and blaIMP) was carried out. While water treatment plants were found to be working properly, as post-treatment water did not contain E. coli or coliforms, once water entered the distribution system, a decline in the chlorine concentration with a concomitant increase in bacterial counts was observed. In particular, water samples from cisterns not only contained high number of E. coli and coliforms, but were also found to contain antibiotic resistance genes. This work shows that proper maintenance of the distribution and storage systems in First Nations communities is essential in order to provide access to clean and safe drinking water.

Concentrations of Herbicides in Wetlands on Organic and Minimum-Tillage Farms.

Wetlands are abundant throughout the agricultural landscape of central Saskatchewan, Canada, and the biota present in these wetlands may be vulnerable to the toxic effects of pesticides used on nearby crops. We hypothesized that herbicide concentrations would be higher in wetlands on minimum-tillage farms than on organic (no herbicide use) farms, and that the principal transport mechanisms of runoff versus atmospheric deposition could be identified based on the concentrations in these two wetland types. To test these hypotheses, 29 herbicides were monitored for 5 yr in 16 wetlands on minimum-tillage farms and in seven wetlands on organic farms. Twenty herbicides were detected in wetlands on minimum-tillage farms versus 12 in wetlands on organic farms. Clopyralid, MCPA, 2,4-D, bromoxynil, dichlorprop, and dicamba were detected at a >50% frequency in wetlands on both minimum-tillage and organic farms. Concentrations of clopyralid were significantly higher in wetlands on minimum-tillage farms than in those on organic farms, whereas no significant difference was observed for any of the other five herbicides. Glyphosate, including its degradation product AMPA, was detected in >50% frequency only in wetlands on minimum-tillage farms where the mean concentration (1278 ng L) was higher than the concentration of other herbicides. Mass applied, vapor pressure, and water solubility were important determinants of herbicide concentrations and detections in wetlands. Herbicide concentrations in all but two samples were less than their respective Canadian guideline for protection of aquatic life, suggesting that, overall, individual herbicide concentrations in the wetlands were not toxic to biota.

Auxin Herbicides and Pesticide Mixtures in Groundwater of a Canadian Prairie Province.

Groundwater samples were collected from piezometers and water table wells in both dryland and irrigated agricultural regions of Alberta, Canada, to examine the occurrence of pesticide mixtures. Fourteen current-use pesticides and two historical compounds were detected over a 3-yr sampling period. Pesticide mixtures were detected in ∼3% of the groundwater samples, and the frequency of detection increased from spring (1.5%) to summer (3.8%) and fall (4.8%). Pesticide mixtures always consisted of at least one of two auxin herbicides: 2,4-dichlorophenoxyacetic acid (2,4-D) or 2-methyl-4-chlorophenoxyacetic acid (MCPA). 19% of all samples contained a single pesticide, with auxin herbicides 2,4-D (7.3%), MCPA (4.4%), and clopyralid (3.9%) being most prevalent. We detected 2,4-D predominantly in the fall (72% of 2,4-D detections) and less in spring and summer (28%). We detected MCPA mostly in summer (85% of MCPA detections) and less in spring and fall (15%). Clopyralid was more evenly detected across spring (30%), summer (25%), and fall (45%). Since the auxin herbicides above are typically applied in summer, results suggest that each herbicide may have different mobility and persistence characteristics in prairie soils. Guidelines for Canadian Drinking Water Quality have been set for a range of individual pesticides, but not for pesticide mixtures. If Canada is to establish such guidelines, this study demonstrates that auxin herbicides should be prioritized. In addition, only 7 of the 16 compounds detected in this study have established maximum acceptable concentrations (MACs), excluding clopyralid, which was detected in all three sampling years.

Author Correction: Comparison of DNA-, PMA-, and RNA-based 16S rRNA Illumina sequencing for detection of live bacteria in water.

A correction to this article has been published and is linked from the HTML and PDF versions of this paper. The error has been fixed in the paper.

Sorption and desorption of glyphosate, MCPA and tetracycline and their mixtures in soil as influenced by phosphate.

Phosphate fertilizers and herbicides such as glyphosate and MCPA are commonly applied to agricultural land, and antibiotics such as tetracycline have been detected in soils following the application of livestock manures and biosolids to agricultural land. Utilizing a range of batch equilibrium experiments, this research examined the competitive sorption interactions of these chemicals in soil. Soil samples (0-15 cm) collected from long-term experimental plots contained Olsen P concentrations in the typical (13 to 20 mg kg-1) and elevated (81 to 99 mg kg-1) range of build-up phosphate in agricultural soils. The elevated Olsen P concentrations in field soils significantly reduced glyphosate sorption up to 50%, but had no significant impact on MCPA and tetracycline sorption. Fresh phosphate additions in the laboratory, introduced to soil prior to, or at the same time with the other chemical applications, had a greater impact on reducing glyphosate sorption (up to 45%) than on reducing tetracycline (up to 13%) and MCPA (up to 8%) sorption. The impact of fresh phosphate additions on the desorption of these three chemicals was also statistically significant, but numerically very small namely < 1% for glyphosate and tetracycline and 3% for MCPA. The presence of MCPA significantly reduced sorption and increased desorption of glyphosate, but only when MCPA was present at concentrations much greater than environmentally relevant and there was no phosphate added to the MCPA solution. Tetracycline addition had no significant effect on glyphosate sorption and desorption in soil. For the four chemicals studied, we conclude that when mixtures of phosphate, herbicides and antibiotics are present in soil, the greatest influence of their competitive interactions is phosphate decreasing glyphosate sorption and the presence of phosphate in solution lessens the potential impact of MCPA on glyphosate sorption. The presence of chemical mixtures in soil solution has an overall greater impact on the sorption than desorption of individual organic chemicals in soil.

Glyphosate (Ab)sorption by Shoots and Rhizomes of Native versus Hybrid Cattail (Typha).

Wetlands in the Prairie Pothole Region of North America are integrated with farmland and contain mixtures of herbicide contaminants. Passive nonfacilitated diffusion is how most herbicides can move across plant membranes, making this perhaps an important process by which herbicide contaminants are absorbed by wetland vegetation. Prairie wetlands are dominated by native cattail (Typha latifolia) and hybrid cattail (Typha x glauca). The objective of this batch equilibrium study was to compare glyphosate absorption by the shoots and rhizomes of native versus hybrid cattails. Although it has been previously reported for some pesticides that passive diffusion is greater for rhizome than shoot components, this is the first study to demonstrate that the absorption capacity of rhizomes is species dependent, with the glyphosate absorption being significantly greater for rhizomes than shoots in case of native cattails, but with no significant differences in glyphosate absorption between rhizomes and shoots in case of hybrid cattails. Most importantly, glyphosate absorption by native rhizomes far exceeded that of the absorption occurring for hybrid rhizomes, native shoots and hybrid shoots. Glyphosate has long been used to manage invasive hybrid cattails in wetlands in North America, but hybrid cattail expansions continue to occur. Since our results showed limited glyphosate absorption by hybrid shoots and rhizomes, this lack of sorption may partially explain the poorer ability of glyphosate to control hybrid cattails in wetlands.

Comparison of DNA-, PMA-, and RNA-based 16S rRNA Illumina sequencing for detection of live bacteria in water.

The limitation of 16S rRNA gene sequencing (DNA-based) for microbial community analyses in water is the inability to differentiate live (dormant cells as well as growing or non-growing metabolically active cells) and dead cells, which can lead to false positive results in the absence of live microbes. Propidium-monoazide (PMA) has been used to selectively remove DNA from dead cells during downstream sequencing process. In comparison, 16S rRNA sequencing (RNA-based) can target live microbial cells in water as both dormant and metabolically active cells produce rRNA. The objective of this study was to compare the efficiency and sensitivity of DNA-based, PMA-based and RNA-based 16S rRNA Illumina sequencing methodologies for live bacteria detection in water samples experimentally spiked with different combination of bacteria (2 gram-negative and 2 gram-positive/acid fast species either all live, all dead, or combinations of live and dead species) or obtained from different sources (First Nation community drinking water; city of Winnipeg tap water; water from Red River, Manitoba, Canada). The RNA-based method, while was superior for detection of live bacterial cells still identified a number of 16S rRNA targets in samples spiked with dead cells. In environmental water samples, the DNA- and PMA-based approaches perhaps overestimated the richness of microbial community compared to RNA-based method. Our results suggest that the RNA-based sequencing was superior to DNA- and PMA-based methods in detecting live bacterial cells in water.