Identification of a rare copy number polymorphic gain at 3q12.2 with candidate genes for familial endometriosis.

Endometriosis is a complex disease that affects 10-15% of women of reproductive age. Familial studies show that relatives of affected patients have a higher risk of developing the disease, implicating a genetic role for this disorder. Little is known about the impact of germline genomic copy number variant (CNV) polymorphisms on the heredity of the disease. In this study, we describe a rare CNV identified in two sisters with familial endometriosis, which contain genes that may increase the susceptibility and progression of this disease. We investigated the presence of CNVs from the endometrium and blood of the sisters with endometriosis and normal endometrium of five women as controls without the disease using array-CGH through the Agilent 2x400K platform. We excluded common CNVs that were present in the database of genomic variation. We identified, in both sisters, a rare CNV gain affecting 113kb at band 3q12.2 involving two candidate genes: ADGRG7 and TFG. The CNV gain was validated by qPCR. ADGRG7 is located at 3q12.2 and encodes a G protein-coupled receptor influencing the NF-kappaß pathway. TFG participates in chromosomal translocations associated with hematologic tumor and soft tissue sarcomas, and is also involved in the NF-kappa B pathway. The CNV gain in this family provides a new candidate genetic marker for future familial endometriosis studies. Additional longitudinal studies of affected families must confirm any associations between this rare CNV gain and genes involved in the NF-kappaß pathway in predisposition to endometriosis.

Identification of a rare copy number polymorphic gain at 3q12.2 with candidate genes for familial endometriosis

Abstract Endometriosis is a complex disease that affects 10-15% of women of reproductive age. Familial studies show that relatives of affected patients have a higher risk of developing the disease, implicating a genetic role for this disorder. Little is known about the impact of germline genomic copy number variant (CNV) polymorphisms on the heredity of the disease. In this study, we describe a rare CNV identified in two sisters with familial endometriosis, which contain genes that may increase the susceptibility and progression of this disease. We investigated the presence of CNVs from the endometrium and blood of the sisters with endometriosis and normal endometrium of five women as controls without the disease using array-CGH through the Agilent 2x400K platform. We excluded common CNVs that were present in the database of genomic variation. We identified, in both sisters, a rare CNV gain affecting 113kb at band 3q12.2 involving two candidate genes: ADGRG7 and TFG. The CNV gain was validated by qPCR. ADGRG7 is located at 3q12.2 and encodes a G protein-coupled receptor influencing the NF-kappaβ pathway. TFG participates in chromosomal translocations associated with hematologic tumor and soft tissue sarcomas, and is also involved in the NF-kappa B pathway. The CNV gain in this family provides a new candidate genetic marker for future familial endometriosis studies. Additional longitudinal studies of affected families must confirm any associations between this rare CNV gain and genes involved in the NF-kappaβ pathway in predisposition to endometriosis.

Erratum to: Familial chromosomal translocation X; 22 associated with infertility and recurrent X mosaicism.

[This corrects the article DOI: 10.1186/s13039-016-0249-5.].

Familial chromosomal translocation X; 22 associated with infertility and recurrent X mosaicism.

BACKGROUND: Individuals with apparently balanced translocations, often, show no clinical findings. However, in meiosis, translocations tend to cause errors on chromosome disjunction and the ones involving sex chromosomes have particular implications for the phenotype. Male carriers of balanced X-autosome translocations are almost invariably infertile due to interruption of the spermatogenesis, but the mechanism is not fully understood. CASE PRESENTATION: In this case report, we performed a combination of classical cytogenetics (G-banding), molecular cytogenetics (fluorescence in situ hybridization and X-chromosome inactivation study), and cytogenomics (microarray-based comparative genomic hybridization) techniques for characterization of an inherited (X;22) translocation in a family originally referred for infertility investigation. Both proband and his sister are infertile and present the maternally inherited translocation. Interestingly, the maternal grandmother was mosaic for X chromosome monosomy suggesting that the t(X;22) in the proband's mother arose by errors at oogenesis. The presence of the same mosaicism of the X chromosome in the proband's aunt is consistent with this consideration. Array- CGH analysis showed no constitutional pathogenic gains or losses in the translocation carriers. The X-chromosome inactivation studies revealed that the translocated X;22 was active in 99.3% of cells in the mother and in 88% of cells in the daughter. We suggest that incomplete skewing of X inactivation (>97 %) of the daughter could justify the infertility. This study is the first description of recurrent mosaicism of the X chromosome associated with a familial X-autosome translocation. CONCLUSIONS: The phenotype of infertility was probably caused by disruption of spermatogenesis due to gametogenesis specific errors resulted from meiotic pairing and segregation anomalies on the translocated chromosomes.

Evaluation of mutagenicity and antimutagenicity of ilex paraguariensis a. st.-hil.: aquifoliaceae infusion on allium cepa assay / Avaliação de mutagenicidade e de antimutagenicidade da infusão de ilex paraguariensis a. st.-hil.: aquifoliaceae no sistema-teste allium cepa

Yerba mate (Ilex paraguariensis A. St.-Hil.: Aquifoliaceae) is the basis for a hot drink very common in southern Brazil and other countries such as Argentina, Paraguay and Uruguay: the mate. However, the available data about its effect on DNA are still controversial. In this research, we evaluated the mutagenic and antimutagenic activity of mate with the Allium cepa assay, analyzing the frequency of micronucleus (MN), cromossomal aberrations (CA) and the mitotic index (MI) from treatments with mate only and treatments with mate and the positive control Methyl Methanesulfonate (MMS) being administered previously, simultaneously and subsequently. Mate itself did not show mutagenic potential. However, the protocols which MMS was administered simultaneously and subsequently, it potentiated the mutagenic effect of the drug. There was no significant increase in the previous treatment with MMS, indicating that there wasn?t a positive or negative influence of the mate on the DNA repair system and other mechanisms for reversing damage on meristematic cells of Allium cepa. Therefore, our results suggests that substances present in mate can act potentiating mutagenic and carcinogenic agents present in other compounds or perhaps damaging cells barriers from certain substances that harm the genetic material.

A erva-mate (Ilex paraguariensis A. St.-Hil.: Aquifoliaceae) é a base de uma bebida quente muito comum no sul do Brasil e em outros países tais como Argentina, Paraguai e Uruguai. No entanto, os dados disponíveis sobre seu efeito no DNA são ainda controversos. Nesta pesquisa, nós avaliamos a atividade mutagênica e antimutagênica do mate no sistema teste de Allium cepa, analisando a frequência de micronúcleos (MN), aberrações cromossômicas (CA) e o índice mitótico (MI) de tratamentos somente com mate e tratamentos com mate e o controle positivo Metil Metano Sulfonase (MMS) sendo administrado anteriormente, simultaneamente e posteriormente. O mate sozinho não apresentou potencial mutagênico. Porém, nos protocolos com MMS sendo administrados simultaneamente e posteriormente, o mate potencializou o efeito mutagênico da droga. Não houve aumentos significativos nos protocolos de tratamento anterior com MMS, indicando que não houve uma influência positiva ou negativa do mate no sistema de reparo de DNA ou outros mecanismos de reversão dos danos nas células meristemáticas da cebola. Desta forma, nossos resultados sugerem que substâncias presentes no mate podem agir potencializando agentes mutagênicos e carcinogênicos presentes em outros compostos ou talvez possam danificar as barreiras celulares a certos compostos que agridem o material genético.