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1.
G3 (Bethesda) ; 13(11)2023 11 01.
Artículo en Inglés | MEDLINE | ID: mdl-37659058

RESUMEN

Tricholoma bakamatsutake, which is an edible ectomycorrhizal fungus associated with Fagaceae trees, may have diverged before the other species in Tricholoma section Caligata. We generated a highly contiguous whole-genome sequence for T. bakamatsutake SF-Tf05 isolated in an Oak (Quercus salicina) forest in Japan. The assembly of high-fidelity long reads, with a median read length of 12.3 kb, resulted in 13 chromosome-sized contigs comprising 142,068,211 bases with an average guanine and cytosine (GC) content of 43.94%. The 13 chromosomes were predicted to encode 11,060 genes. A contig (122,566 bases) presumably containing the whole circular mitochondrial genome was also recovered. The chromosome-wide comparison of T. bakamatsutake and Tricholoma matsutake (TMA_r1.0) indicated that the basic number of chromosomes (13) was conserved, but the structures of the corresponding chromosomes diverged, with multiple inversions and translocations. Gene conservation and cluster analyses revealed at least 3 phylogenetic clades in Tricholoma section Caligata. Specifically, all T. bakamatsutake strains belonged to the "bakamatsutake" clade, which is most proximal to the "caligatum" clade consisting of Tricholoma caligatum and Tricholoma fulvocastaneum. The constructed highly contiguous nearly telomere-to-telomere genome sequence of a T. bakamatsutake isolate will serve as a fundamental resource for future research on the evolution and differentiation of Tricholoma species.


Asunto(s)
Micorrizas , Quercus , Tricholoma , Tricholoma/genética , Filogenia , Quercus/genética , Cromosomas
2.
Fungal Genet Biol ; 164: 103752, 2023 01.
Artículo en Inglés | MEDLINE | ID: mdl-36435348

RESUMEN

Ultraviolet (UV) light is a mutagen that causes DNA damage. Some UV-sensitive Neurospora crassa strains have been reported to exhibit a partial photoreactivation defect (PPD) phenotype, and the possible cause of this has been unknown for more than half a century. In this study, in the process of elucidating the possible causes of a PPD phenotype, we discovered that the XPF homologue MUS-38 is involved in repairing the UV-induced DNA interstrand crosslink (ICL) in N. crassa. Furthermore, the sensitivity of the Δmus-38 and Δmus-44 strains to ICL agents was significantly higher than that of other nucleotide excision repair (NER)-related gene knockout (KO) strains, indicating that the MUS-38/MUS-44 complex is involved in an NER-independent ICL repair mechanism. Based on reports concerning the mammalian homologues XPF and ERCC1 we obtained separation-of-function mutants defective only in NER in mus-38 and mus-44. Additionally, the photoreactivation ability of these mutants was significantly higher than that of the KO strains. These results indicate that the PPD phenotype is caused by a defect in the repair-ability of ICL induced by UV and that an NER-independent ICL repair by MUS-38 and MUS-44 confers resistance to UV in N. crassa.


Asunto(s)
Neurospora crassa , Animales , Neurospora crassa/genética , Neurospora crassa/metabolismo , Reparación del ADN/genética , Daño del ADN/genética , ADN , Mutágenos , Endonucleasas/genética , Endonucleasas/metabolismo , Rayos Ultravioleta , Mamíferos/genética , Mamíferos/metabolismo
3.
Fungal Biol ; 126(11-12): 826-833, 2022.
Artículo en Inglés | MEDLINE | ID: mdl-36517150

RESUMEN

The mhg1 (NCU02695/ada-23) gene encodes the mitochondrial high-mobility group box (HMG-box or HMGB) protein in Neurospora crassa. The mhg1 KO strain (mhg1KO) has mitochondrial DNA (mtDNA) instability and a short lifespan; however, the function of MHG1 remains unclear. To investigate the role of this protein in the maintenance of mtDNA, domain deleted MHG1 proteins were expressed in the mhg1KO strain, and their effects were analyzed. We identified two putative HMG-domains, HMGBI and HMGBII. Although deletion of the HMG-box did not abolish MHG1's mitochondrial localization, the mhg1KO phenotype of a severe growth defect and a high sensitivity to mutagens could not be restored by introduction of HMG-box deleted mhg1 gene into the KO strain. It was indicated that recombinant full-length MHG1, i.e., mitochondrial targeting sequence (MTS) containing protein, did not exhibit explicit DNA binding, whereas the MHG1 protein truncated for the MTS sequence did in vitro by an electrophoretic mobility shift assay. Furthermore, recombinant MHG1 protein lacking MTS and HMG-domains, either HMGBI or HMGBII, had DNA affinity and an altered band shift pattern compared with MTS-truncated MHG1 protein. These results suggest that cleavage of MTS and appropriate DNA binding via HMG-domains are indispensable for maintaining mtDNA in N. crassa.


Asunto(s)
Neurospora crassa , Neurospora crassa/genética , Neurospora crassa/metabolismo , ADN Mitocondrial/genética , Mitocondrias/genética , Mitocondrias/metabolismo , Dominios Proteicos , Proteínas Mitocondriales/genética , Proteínas Mitocondriales/metabolismo
4.
Hum Cell ; 34(4): 1087-1092, 2021 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-34013455

RESUMEN

Subthreshold depression (StD) is a depressive state that does not fulfil the criteria for major depressive disorder (MDD); however, StD has a risk for progression to MDD, and early intervention is therefore needed. Recently, a method for extracting neural extracellular vesicles (NEVs) excreted from neural cells of the brain from blood has been established, and microRNAs (miRNAs) encapsulated in NEVs are attracting interest because of their potential correlation to the pathogenesis of psychiatric disorders. However, miRNAs closely related to StD are still unknown. Therefore, to try to identify miRNAs closely related to the degree of StD, we examined the correlations between expression levels of some candidate miRNAs in NEVs and Patient Health Questionnaire-9 (PHQ-9) scores in subjects. Total RNAs in NEVs were extracted from serum of young adult males who had PHQ-9 scores of less than 10 (n = 9). Expression levels of eight miRNAs that were previously reported to be depression-associated miRNAs (let-7a-5p, miR-17-5p, miR-26b-5p, miR-34a-5p, miR-132-3p, miR-182-5p, miR-212-3p, and miR-1202) were measured using real-time PCR. Two of the eight miRNAs (miR-17-5p and miR-26b-5p) were stably detected. The relative expression levels of miR-17-5p showed a significant positive correlation with PHQ-9 scores (r = 0.85, p < 0.01), while those of miR-26b-5p showed no significance. Although a larger-scale analysis is needed due to the small number of subjects, these findings suggest that miR-17-5p in NEVs is a potential biomarker for StD.


Asunto(s)
Depresión/diagnóstico , Vesículas Extracelulares/metabolismo , MicroARNs/sangre , Adulto , Biomarcadores/sangre , Depresión/complicaciones , Trastorno Depresivo Mayor/etiología , Trastorno Depresivo Mayor/prevención & control , Progresión de la Enfermedad , Expresión Génica , Humanos , Masculino , MicroARNs/genética , MicroARNs/metabolismo , Riesgo , Encuestas y Cuestionarios
5.
Genes Genet Syst ; 95(6): 281-289, 2021 Mar 23.
Artículo en Inglés | MEDLINE | ID: mdl-33551431

RESUMEN

Photoreactivation is a mechanism in which photolyase directly repairs either cyclobutane pyrimidine dimers (CPDs) or (6-4) photoproducts [(6-4) PPs] caused by ultraviolet (UV) light. In the filamentous fungus Neurospora crassa, some UV-sensitive mutants such as mus-44 have been reported to exhibit a partial photoreactivation defect (PPD) phenotype, but its mechanism has not been elucidated for a long time. In this study, the N. crassa CPD photolyase PHR was overexpressed in the Δmus-44 strain, but photoreactivation ability was not increased. Furthermore, Escherichia coli CPD photolyase or Arabidopsis thaliana (6-4) PP photolyase was also introduced into Δmus-44; however, the PPD phenotype was not complemented. These results suggested that the PPD phenotype in N. crassa is not caused by residual unrepaired pyrimidine dimers, which are the main type of DNA damage caused by UV irradiation. Finally, we revealed that Δmus-44, but not the Δmus-43 strain, which does not show the PPD phenotype, displayed higher sensitivity with increasing dose rate of UV. Moreover, Δmus-44 was also sensitive to an interstrand crosslinking agent. This indicates that the high dose of UV in our experimental condition induces DNA damage other than pyrimidine dimers, and that such damage is a likely cause of the PPD phenotype.


Asunto(s)
Reparación del ADN , Desoxirribodipirimidina Fotoliasa/metabolismo , Proteínas Fúngicas/metabolismo , Neurospora crassa/genética , Dímeros de Pirimidina/genética , Tolerancia a Radiación , Proteínas de Arabidopsis/genética , Proteínas de Arabidopsis/metabolismo , Desoxirribodipirimidina Fotoliasa/genética , Proteínas Fúngicas/genética , Fenotipo , Transgenes , Rayos Ultravioleta
6.
Fungal Genet Biol ; 144: 103465, 2020 11.
Artículo en Inglés | MEDLINE | ID: mdl-32949723

RESUMEN

Wild-type filamentous fungus Neurospora crassa continues to grow its hyphae for a very lengthy period of time (>2 years), whereas mutations at the natural death (nd) locus shorten life span (approximately 20 days). By positional cloning based on heat augmented mutagen sensitivity of the nd strain, we identified a nonsense mutation in the msh1 gene, an eukaryotic homolog of bacterial MutS, and this mutation resulted in encoding non-functional polypeptide. By tagging with GFP, subcellular localization of the MSH1 protein in the mitochondria was observed, and knock out of the msh1 gene caused severe growth deficiency accompanying mitochondrial DNA (mtDNA) aberrations such as large-scale mtDNA deletions and rearrangements as seen in the nd strain. These results suggested that MSH1 may maintain mtDNA integrity. Thus, loss of function compromises mtDNA, leading to the acceleration of cellular aging.


Asunto(s)
ADN Mitocondrial/genética , Hifa/genética , Longevidad/genética , Proteínas MutS/genética , Secuencia de Aminoácidos/genética , Codón sin Sentido/genética , Proteínas de Unión al ADN/genética , Hifa/crecimiento & desarrollo , Mitocondrias/genética , Mitocondrias/metabolismo , Neurospora crassa/genética , Neurospora crassa/crecimiento & desarrollo , Recombinación Genética/genética , Saccharomyces cerevisiae/genética
7.
Genetics ; 216(3): 671-688, 2020 11.
Artículo en Inglés | MEDLINE | ID: mdl-32873602

RESUMEN

DNA methylation, a prototypical epigenetic modification implicated in gene silencing, occurs in many eukaryotes and plays a significant role in the etiology of diseases such as cancer. The filamentous fungus Neurospora crassa places DNA methylation at regions of constitutive heterochromatin such as in centromeres and in other A:T-rich regions of the genome, but this modification is dispensable for normal growth and development. This and other features render N. crassa an excellent model to genetically dissect elements of the DNA methylation pathway. We implemented a forward genetic selection on a massive scale, utilizing two engineered antibiotic-resistance genes silenced by DNA methylation, to isolate mutants d efective i n m ethylation (dim). Hundreds of potential mutants were characterized, yielding a rich collection of informative alleles of 11 genes important for DNA methylation, most of which were already reported. In parallel, we characterized the pairwise interactions in nuclei of the DCDC, the only histone H3 lysine 9 methyltransferase complex in Neurospora, including those between the DIM-5 catalytic subunit and other complex members. We also dissected the N- and C-termini of the key protein DIM-7, required for DIM-5 histone methyltransferase localization and activation. Lastly, we identified two alleles of a novel gene, dim-10 - a homolog of Clr5 in Schizosaccharomyces pombe - that is not essential for DNA methylation, but is necessary for repression of the antibiotic-resistance genes used in the selection, which suggests that both DIM-10 and DNA methylation promote silencing of constitutive heterochromatin.


Asunto(s)
Metilación de ADN/genética , Proteínas Fúngicas/genética , Mutación , Neurospora crassa
8.
Fungal Biol ; 124(7): 613-618, 2020 07.
Artículo en Inglés | MEDLINE | ID: mdl-32540184

RESUMEN

Most fungi are multinucleated organisms. In some fungi, they have asynchronous nuclei in the same cytoplasm. We analyzed a cell-cycle regulation mechanism using a model fungus Neurospora crassa, which can make heterokaryon cells. G1/S cyclin CLN-1 and cyclin-dependent kinase CDC-2 were tagged with different fluorescence in different strains and expressed. By forming a heterokaryon strain of these, two different fluorescence-tagged proteins were expressed in the same cytoplasm. CDC-2 was localized in all nuclei, whereas CLN-1 was not detected in most of the nuclei and was dispersed in the cytoplasm with small granular clusters. This indicates that in multinucleated fungi, cell-cycle regulators, similar to other proteins, are shared around the nuclei regardless of different cell-cycle stages. Moreover, each nucleus can select and use a special cell-cycle regulator only when it is necessary. Fungal nuclei may have a novel pickup mechanism of necessary proteins from their cytoplasm at the point of use.


Asunto(s)
Proteínas de Ciclo Celular , Proteínas Fúngicas , Neurospora crassa , Proteína Quinasa CDC2/metabolismo , Ciclo Celular , Proteínas de Ciclo Celular/genética , Proteínas de Ciclo Celular/metabolismo , Núcleo Celular/metabolismo , Citoplasma/metabolismo , Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Neurospora crassa/citología , Neurospora crassa/genética , Neurospora crassa/metabolismo
9.
Int J Radiat Biol ; 94(12): 1125-1133, 2018 12.
Artículo en Inglés | MEDLINE | ID: mdl-30307372

RESUMEN

PURPOSE: To assess the unique biological effects of different forms of ionizing radiation causing DNA double-strand breaks (DSBs), we compared the killing effect, mutagenesis frequency, and mutation type spectrum using the model filamentous fungus Neurospora. MATERIALS AND METHODS: Asexual spores of wild-type Neurospora and two DSB repair-deficient strains [one homologous recombination- and the other non-homologous end-joining (NHEJ) pathway-deficient] were irradiated with argon (Ar)-ion beams, ferrous (Fe)-ion beams, or X-rays. Relative biological effectiveness (RBE), forward mutation frequencies at the ad-3 loci, and mutation spectra at the ad-3B gene were determined. RESULTS: The canonical NHEJ (cNHEJ)-deficient strain showed resistance to higher X-ray doses, while other strains showed dose-dependent sensitivity. In contrast, the killing effects of Ar-ion and Fe-ion beam irradiation were dose-dependent in all strains tested. The rank order of RBE was Ar-ion > Fe-ion > C-ion. Deletion mutations were the most common, but deletion size incremented with the increasing value of linear energy transfer (LET). CONCLUSIONS: We found marked differences in killing effect of a cNHEJ-deficient mutant between X-ray and high-LET ion beam irradiations (Ar and Fe). The mutation spectra also differed between irradiation types. These differences may be due to the physical properties of each radiation and the repair mechanism of induced damage in Neurospora crassa. These results may guide the choice of irradiation beam to kill or mutagenize fungi for agricultural applications or further research.


Asunto(s)
Transferencia Lineal de Energía , Mutagénesis/efectos de la radiación , Neurospora crassa/genética , Neurospora crassa/efectos de la radiación , Iones Pesados/efectos adversos , Mutación/efectos de la radiación , Análisis de Supervivencia , Rayos X/efectos adversos
10.
Fungal Genet Biol ; 105: 28-36, 2017 08.
Artículo en Inglés | MEDLINE | ID: mdl-28602830

RESUMEN

To elucidate genetic mechanisms affecting the lifespan of the filamentous fungus Neurospora crassa, we attempted to identify a gene of which a defect causes a short-lifespan. By screening a Neurospora knockout library, provided by the Fungal Genetics Stock Center at Kansas State University, several KO strains with a short-lifespan were isolated. FGSC#11693 is one of these, which shows similar phenotypes to known Neurospora short-lifespan mutants as follows: 1) hyphal growth ceases after about 2weeks of cultivation, despite that of the wild-type continuing for over 2years, 2) viability of conidia is lower than that of the wild-type, and 3) high sensitivity to mutagens such as methyl methanesulfonate, ultraviolet radiation, and hydroxyl urea is exhibited. The NCU number of the knocked-out gene in the KO strain is NCU02695, and recovery from the short-lifespan and mutagen sensitivity was achieved by the introduction of this gene from the wild-type. The putative amino acid sequence of the knocked-out gene contains two high mobility group box domains and a mitochondrial localization signal is found at the N-terminal of this sequence. Upon analyzing the subcellular localization of the gene product fused with GFP, GFP signals were detected in mitochondria. From these observations, the gene and KO strain were named mitochondrial high mobility group box protein 1 (MHG1) and mhg1KO strain, respectively. The amount of mtDNA relative to the nuclear amount was lower in the mhg1KO strain than in the wild-type. mtDNA aberration was also observed in the mhg1KO strain. These results suggest that the MHG1 protein plays an important role in the maintenance of mitochondrial DNA, and mitochondrial abnormality caused by mtDNA aberration is responsible for the short-lifespan of the mhg1KO strain.


Asunto(s)
ADN de Hongos/metabolismo , ADN Mitocondrial/metabolismo , Proteínas Fúngicas/genética , Proteínas HMGB/genética , Neurospora crassa/genética , Secuencia de Aminoácidos , Proteínas Fúngicas/metabolismo , Técnicas de Silenciamiento del Gen , Genes Fúngicos , Proteínas HMGB/metabolismo , Longevidad/genética , Mutágenos/farmacología , Neurospora crassa/efectos de los fármacos , Neurospora crassa/aislamiento & purificación , Neurospora crassa/metabolismo , Fenotipo , Dominios Proteicos
11.
Fungal Biol ; 117(4): 227-38, 2013 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-23622717

RESUMEN

Heavy-ion beams are known to cause great damage to cellular components and are particularly renowned for their ability to generate DNA double-strand breaks (DSBs). To gain insight into the mutagenic effect of carbon-ion beams and how such damage is repaired by the cell, Neurospora crassa mutants deficient in one of three components involved in the repair of DSBs, nonhomologous end-joining (NHEJ), homologous recombination repair (HR), and the Mre11-Rad50-Xrs2 (MRX) complex, were irradiated with a carbon-ion beam and killing effect, mutation frequencies, and the type of mutation incurred by survivors were analysed. The sensitivity of the NHEJ-deficient strain (mus-52) was higher than that of the wild-type and the HR-deficient (mei-3) strains at low doses of radiation, but was little changed as the level increased. As a result both the wild-type and HR-deficient strains were more sensitive than the NHEJ-deficient strain at high radiation levels. In addition, the frequency of forward mutation at the adenine-3 (ad-3) loci of the NHEJ-deficient mutant was lower than that of the wild-type strain at all levels, while the mutation frequency of the HR-deficient strain was consistently ∼3-fold higher than the wild-type. From the comparison of mutation type of each strain, deletions were frequently observed in wild-type strain, whilst base substitution and deletion in the mus-52 and mei-3 strains. These mutations resulting from carbon-ion-beam irradiation depend on the mechanism invoked to cope with DSBs. Furthermore, in wild-type cells, these mechanisms likely compete to repair DSBs.


Asunto(s)
Mutación , Neurospora crassa/genética , Neurospora crassa/efectos de la radiación , Radiación Ionizante , Carbono , Roturas del ADN de Doble Cadena/efectos de la radiación , Reparación del ADN , ADN de Hongos/química , ADN de Hongos/genética , Hongos/genética , Hongos/efectos de la radiación , Iones , Viabilidad Microbiana/efectos de la radiación , Datos de Secuencia Molecular , Tasa de Mutación , Neurospora crassa/fisiología , Análisis de Secuencia de ADN
12.
Eukaryot Cell ; 12(2): 233-43, 2013 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-23223037

RESUMEN

Mitochondria are highly dynamic organelles that continuously fuse and divide. To maintain mitochondria, cells establish an equilibrium of fusion and fission events, which are mediated by dynamin-like GTPases. We previously showed that an mus-10 strain, a mutagen-sensitive strain of the filamentous fungus Neurospora crassa, is defective in an F-box protein that is essential for the maintenance of mitochondrial DNA (mtDNA), long life span, and mitochondrial morphology. Similarly, a uvs-5 mutant accumulates deletions within its mtDNA, has a shortened life span, and harbors fragmented mitochondria, the latter of which is indicative of an imbalance between mitochondrial fission and fusion. Since the uvs-5 mutation maps very close to the locus of fzo1, encoding a mitofusin homologue thought to mediate mitochondrial outer membrane fusion, we determined the sequence of the fzo1 gene in the uvs-5 mutant. A single amino acid substitution (Q368R) was found in the GTPase domain of the FZO1 protein. Expression of wild-type FZO1 in the uvs-5 strain rescued the mutant phenotypes, while expression of a mutant FZO1 protein did not. Moreover, when knock-in of the Q368R mutation was performed on a wild-type strain, the resulting mutant displayed phenotypes identical to those of the uvs-5 mutant. Therefore, we concluded that the previously unidentified uvs-5 gene is fzo1. Furthermore, we used immunoprecipitation analysis to show that the FZO1 protein interacts with MUS-10, which suggests that these two proteins may function together to maintain mitochondrial morphology.


Asunto(s)
Proteínas Fúngicas/genética , GTP Fosfohidrolasas/genética , Proteínas Mitocondriales/genética , Neurospora crassa/enzimología , Secuencia de Aminoácidos , Sustitución de Aminoácidos , Mapeo Cromosómico , Proteínas de Drosophila/genética , Proteínas Fúngicas/química , Proteínas Fúngicas/metabolismo , GTP Fosfohidrolasas/química , GTP Fosfohidrolasas/metabolismo , Ligamiento Genético , Longevidad , Proteínas de la Membrana/genética , Viabilidad Microbiana , Proteínas Mitocondriales/química , Proteínas Mitocondriales/metabolismo , Anotación de Secuencia Molecular , Datos de Secuencia Molecular , Micelio/fisiología , Neurospora crassa/genética , Neurospora crassa/fisiología , Fenotipo , Análisis de Secuencia de ADN , Homología de Secuencia de Aminoácido , Esporas Fúngicas/fisiología
13.
Fungal Genet Biol ; 49(4): 263-70, 2012 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-22395065

RESUMEN

Stalled replication forks easily collapse and such structures can induce DNA strand breaks or toxic recombination products. Therefore, factors involved in stabilization of replication should be important for genome integrity. In our previous study, loss of both ATM and ATR homologues was shown to cause growth defects and chromosome instability in Neurospora crassa. To elucidate the relationships between these defects and replication instability, we focused on one of the viable replication factors, mrc1. We identified an mrc1 homologue from the N. crassa genome database. The mrc1 disruptant was sensitive to the replication inhibitor hydroxyurea (HU) and delayed restart of the cell cycle from HU treatment. Importantly, HU treatment induced histone H2A phosphorylation in the mrc1 mutant but not in the wild type. Furthermore, the HU-induced H2A phosphorylation was completely dependent on the ATM homologue mus-21, and dysfunction of mus-21 increased HU sensitivity of the mrc1 mutant. These results indicate that Neurospora mrc1 is important for stabilization of replication forks and that loss of mrc1 causes activation of the DNA damage checkpoint. Unexpectedly, loss of mrc1 did not affect cell growth, but the deletion of mrc1 reduced hyphal growth speed and conidia viability in the mus-9 and mus-21 mutants. The mrc1 mus-9 and mrc1 mus-21 double mutants also showed accumulation of micronuclei, which is a typical marker of chromosome instability. These results imply that activation of the checkpoint pathway can protect cells from instability of DNA replication caused by loss of mrc1.


Asunto(s)
Inestabilidad Cromosómica/genética , Replicación del ADN/genética , ADN de Hongos/genética , Proteínas Fúngicas/genética , Neurospora crassa/fisiología , Ciclo Celular/efectos de los fármacos , Ciclo Celular/genética , Inestabilidad Cromosómica/efectos de los fármacos , Daño del ADN/efectos de los fármacos , Daño del ADN/genética , Reparación del ADN/efectos de los fármacos , Reparación del ADN/genética , Replicación del ADN/efectos de los fármacos , Proteínas Fúngicas/metabolismo , Histonas/efectos de los fármacos , Histonas/genética , Histonas/metabolismo , Hidroxiurea/farmacología , Hifa/genética , Hifa/crecimiento & desarrollo , Micronúcleos con Defecto Cromosómico , Mutación , Neurospora crassa/citología , Neurospora crassa/efectos de los fármacos , Neurospora crassa/genética , Inhibidores de la Síntesis del Ácido Nucleico/farmacología , Fosforilación/efectos de los fármacos , Esporas Fúngicas/citología , Esporas Fúngicas/genética , Esporas Fúngicas/fisiología
14.
Int Arch Allergy Immunol ; 155 Suppl 1: 40-5, 2011.
Artículo en Inglés | MEDLINE | ID: mdl-21646794

RESUMEN

BACKGROUND: Eosinophilic gastrointestinal disorders (EGIDs) are disorders characterized by primary eosinophil inflammation in the gastrointestinal tract. There are a small number of reports of eosinophil infiltration in gastrointestinal tracts presenting as EGIDs in infants. In this study, we present Japanese cases of EGIDs in infants. METHODS: Five patients diagnosed with or strongly suspected to have EGIDs in our hospital from 2008 to 2010 were reviewed. Radiographic contrast enema examinations and/or endoscopies were performed in 4 and 3 patients, respectively. RESULTS: There were patients with eosinophilic colitis (1 suspected and 2 biopsy-proven), a patient who was suspected of having allergic eosinophilic enterocolitis, and a patient with eosinophilic gastroenteritis associated with pediatric hypereosinophilic syndrome. CONCLUSIONS: The causes and clinical findings of patients with intestinal eosinophil inflammation vary. Therefore, deliberate examination and observation are important for patients with infantile EGID.


Asunto(s)
Enteritis , Eosinofilia , Gastritis , Colon/patología , Anomalías Congénitas/patología , Constricción Patológica/patología , Eccema/complicaciones , Enteritis/sangre , Enteritis/complicaciones , Enteritis/diagnóstico , Enteritis/etiología , Enteritis/patología , Enteritis/terapia , Eosinofilia/sangre , Eosinofilia/complicaciones , Eosinofilia/diagnóstico , Eosinofilia/etiología , Eosinofilia/patología , Eosinofilia/terapia , Eosinófilos/patología , Heces/citología , Femenino , Mucosa Gástrica/patología , Gastritis/sangre , Gastritis/complicaciones , Gastritis/diagnóstico , Gastritis/etiología , Gastritis/patología , Gastritis/terapia , Humanos , Síndrome Hipereosinofílico/sangre , Síndrome Hipereosinofílico/complicaciones , Síndrome Hipereosinofílico/patología , Inmunoglobulina E/sangre , Inmunoglobulina E/inmunología , Lactante , Recién Nacido , Mucosa Intestinal/patología , Japón , Masculino , Hipersensibilidad a la Leche/complicaciones , Hipersensibilidad a la Leche/inmunología , Miocarditis/complicaciones , Sangre Oculta , Prednisolona/uso terapéutico , Recto/patología , Síndrome
15.
Genetics ; 185(4): 1257-69, 2010 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-20516500

RESUMEN

While mitochondria are renowned for their role in energy production, they also perform several other integral functions within the cell. Thus, it is not surprising that mitochondrial dysfunction can negatively impact cell viability. Although mitochondria have received an increasing amount of attention in recent years, there is still relatively little information about how proper maintenance of mitochondria and its genomes is achieved. The Neurospora crassa mus-10 mutant was first identified through its increased sensitivity to methyl methanesulfonate (MMS) and was thus believed to be defective in some aspect of DNA repair. Here, we report that mus-10 harbors fragmented mitochondria and that it accumulates deletions in its mitochondrial DNA (mtDNA), suggesting that the mus-10 gene product is involved in mitochondrial maintenance. Interestingly, mus-10 begins to senesce shortly after deletions are visualized in its mtDNA. To uncover the function of MUS-10, we used a gene rescue approach to clone the mus-10 gene and discovered that it encodes a novel F-box protein. We show that MUS-10 interacts with a core component of the Skp, Cullin, F-box containing (SCF) complex, SCON-3, and that its F-box domain is essential for its function in vivo. Thus, we provide evidence that MUS-10 is part of an E3 ubiquitin ligase complex involved in maintaining the integrity of mitochondria and may function to prevent cellular senescence.


Asunto(s)
ADN Mitocondrial/genética , Proteínas F-Box/metabolismo , Proteínas Fúngicas/metabolismo , Mitocondrias/metabolismo , Neurospora crassa/metabolismo , Secuencia de Bases , Western Blotting , Proteínas Cullin/genética , Proteínas Cullin/metabolismo , Citosol/metabolismo , Fragmentación del ADN , ADN Mitocondrial/química , Secuencias F-Box/genética , Proteínas F-Box/genética , Proteínas Fúngicas/genética , Eliminación de Gen , Hifa/genética , Hifa/crecimiento & desarrollo , Hifa/metabolismo , Microscopía Fluorescente , Mitocondrias/genética , Datos de Secuencia Molecular , Mutación , Neurospora crassa/genética , Neurospora crassa/crecimiento & desarrollo , Unión Proteica , Proteínas Quinasas Asociadas a Fase-S/genética , Proteínas Quinasas Asociadas a Fase-S/metabolismo , Análisis de Secuencia de ADN , Técnicas del Sistema de Dos Híbridos
16.
Fungal Genet Biol ; 47(10): 809-17, 2010 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-20553930

RESUMEN

Genome integrity is maintained by many cellular mechanisms in eukaryotes. One such mechanism functions during the cell cycle and is known as the DNA damage checkpoint. In the filamentous fungus Neurospora crassa, mus-9 and mus-21 are homologes of two key factors of the mammalian DNA damage checkpoint, ATR and ATM, respectively. We previously showed that mus-9 and mus-21 mutants are sensitive to DNA damage and that each mutant shows a characteristic growth defect: conidia from the mus-9 mutant have reduced viability and the mus-21 mutant exhibits slow hyphal growth. However, the relationship between these two genes has not been determined because strains carrying both mus-9 and mus-21 mutations could not be obtained. To facilitate analysis of a strain deficient in both mus-9 and mus-21, we introduced a specific mutation to the kinase domain of MUS-9 to generate a temperature-sensitive mus-9 allele (mus-9(ts)) which shows increased mutagen sensitivity at 37 degrees C. Then we crossed this strain with a mus-21 mutant to obtain a mus-9(ts) mus-21 double mutant. Growth of the mus-9(ts) mus-21 double mutant did not progress at the restrictive temperature (37 degrees C). Even at the permissive temperature (25 degrees C), this strain exhibited a higher mutagen sensitivity than that of the mus-9 and mus-21 single mutants, as well as slow hyphal growth and low viability of conidia. These results indicate that the mus-9(ts) mutation causes hypomorphic phenotypes in the mus-21 mutant and that these two genes regulate different pathways. Interestingly, we observed accumulation of micronuclei in the conidia of this double mutant, and such micronuclei were likely to correlate with spontaneous DSBs. Our results suggest that both mus-9 and mus-21 pathways are involved in DNA damage response, normal growth and maintenance of chromosome integrity, and that at least one of the pathways must be functional for survival.


Asunto(s)
Proteínas de Ciclo Celular/fisiología , Cromosomas Fúngicos/metabolismo , Proteínas de Unión al ADN/fisiología , Proteínas Fúngicas/fisiología , Neurospora crassa/crecimiento & desarrollo , Proteínas Serina-Treonina Quinasas/fisiología , Proteínas Supresoras de Tumor/fisiología , Secuencia de Aminoácidos , Proteínas de la Ataxia Telangiectasia Mutada , Proteínas de Ciclo Celular/química , Proteínas de Ciclo Celular/genética , Cromosomas Fúngicos/genética , Proteínas de Unión al ADN/química , Proteínas de Unión al ADN/genética , Proteínas Fúngicas/química , Proteínas Fúngicas/genética , Datos de Secuencia Molecular , Mutación , Neurospora crassa/enzimología , Neurospora crassa/genética , Proteínas Serina-Treonina Quinasas/química , Proteínas Serina-Treonina Quinasas/genética , Estructura Terciaria de Proteína/genética , Alineación de Secuencia , Proteínas Supresoras de Tumor/química , Proteínas Supresoras de Tumor/genética
17.
Biochem Biophys Res Commun ; 396(2): 289-93, 2010 May 28.
Artículo en Inglés | MEDLINE | ID: mdl-20406622

RESUMEN

Gene targeting induced by homologous integration of a foreign DNA segment into a chromosomal target sequence enables precise disruption or replacement of genes of interest and provides an effective means to analyze gene function, and also becomes an useful technique for breeding. But, integration of introduced DNA fragments is predominantly non-homologous in most species. However, we presented high-efficient homologous integration in disruptants of non-homologous end joining (NHEJ), that is, the Ku70-, Ku80- or Lig4-homologs deficient strain, in a model fungus Neurospora crassa. When the effect of NHEJ-defective plants for gene targeting was therefore examined in a model plant Arabidopsis (Arabidopsis thaliana), the efficiencies of gene targeting in the Atlig4/Atlig4 plant were 2/7 (28.6%) against calli obtained a selection-marker gene, 2/16 (12.5%) against selected calli, and about 2/540 (0.004%) against total cell particles at the starting point for transformation. The results of this paper show that the NHEJ-deficient system might cause a decrease in the efficiency of transformation but gives true targeted transformants with high efficiency in plant cell.


Asunto(s)
Proteína AGAMOUS de Arabidopsis/genética , Arabidopsis/genética , Marcación de Gen/métodos , Transformación Genética , Células Cultivadas , Análisis de Secuencia de ADN
18.
Pediatr Int ; 51(1): 66-70, 2009 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-19371280

RESUMEN

BACKGROUND: Using magnetic resonance imaging (MRI), changes in the livers of postoperative biliary atresia (BA) patients were investigated. METHODS: Periodic MRI was performed in 32 postoperative BA patients. The findings were evaluated by calculating the near-normal liver tissue area that corresponded with normal- or high-signal regions on T1-weighted imaging. The patients were divided into three groups based on the extent of near-normal liver tissue on the final MRI: group A, n = 14; group B, n = 13; and group C, n = 5, included patients with >40%, 20-40%, and <20% area of near-normal liver tissue, respectively. The relationship among the macroscopic and histological findings in the liver at orthotopic living donor liver transplantation (OLDLT), patient outcomes, and MRI findings were investigated. RESULTS: In group A, 11 patients had no evidence of liver dysfunction. In group B, six patients either had undergone or were awaiting OLDLT. In group C, all patients had undergone OLDLT. All patients had either adequate or impaired bile drainage in each liver segment. The segmental changes corresponded with the liver architecture at OLDLT. The changes could be evaluated on MRI at 1-2 years after surgery. CONCLUSIONS: Adequate and restricted areas of liver tissue with near-normal structure were indicative of good and poor prognoses, respectively. Shortly after portoenterostomy, these segmental changes occurred and/or developed in each liver segment and could be detected on MRI. It is emphasized that patients with >40% area of near-normal liver architecture at the initial stages did not require OLDLT, while those with <20% area did require OLDLT.


Asunto(s)
Atresia Biliar/patología , Hígado/patología , Imagen por Resonancia Magnética , Atresia Biliar/cirugía , Niño , Preescolar , Humanos , Lactante , Trasplante de Hígado
19.
Asian J Surg ; 27(1): 43-8, 2004 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-14719514

RESUMEN

OBJECTIVE: Ultrasound (US) has been used as a tool to determine the indication for surgery for neonatal ovarian cysts. The purpose of this study was to investigate whether magnetic resonance imaging (MRI) contributes to optimal management. METHODS: Between 1993 and 2001, US and MRI studies were simultaneously performed on 13 consecutive infants younger than 2 months of age with ovarian cysts. The US Patterns were classified as complex or simple. Signal intensity (SI) of the cysts on MRI was compared with that of the liver on T1-weighted images (T1WI) and with urine on T2-weighted images (T2WI). We assumed that high SI on T1WI and iso or low SI on T2WI indicated complications. RESULTS: There were 10 complex and three simple cysts on US. Of the 10 complex cysts, two had no complications at surgery or resolved spontaneously. These two cysts showed low SI on T1WI. Eight complex cysts showed high SI on T1WI and all were haemorrhagic. The US diagnosis corresponded to the MRI findings in three simple cysts. The sensitivity of US for haemorrhage was 80%, and that of MRI was 100%. CONCLUSIONS: We found that MRI was a more reliable diagnostic modality than US for diagnosing neonatal ovarian cysts.


Asunto(s)
Imagen por Resonancia Magnética , Quistes Ováricos/congénito , Quistes Ováricos/diagnóstico , Femenino , Humanos , Lactante , Recién Nacido , Quistes Ováricos/diagnóstico por imagen , Quistes Ováricos/cirugía , Sensibilidad y Especificidad , Ultrasonografía
20.
J Pediatr Surg ; 39(1): 103-6, 2004 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-14694383

RESUMEN

A newborn girl with neuroblastoma presented with hypertension (blood pressure 200/140 mm Hg). The concentration of active renin in the ipsilateral renal vein was exceedingly high compared with those in the other venous systems, and angiography results showed narrowing of the contralateral 2 renal arteries. The tumor regressed in size after chemotherapy, but the blood pressure remained high. Percutaneous transluminal angioplasty (PTA) for the left renal arteries was performed twice, the first one at 5 months of age, which achieved some success in the recovery of impaired kidney function. At 8 months of age, she underwent radical resection of the neuroblastoma and removal of the right kidney, and the blood pressure promptly returned to normal postoperatively. The current patient represents the second youngest, well-documented case of renovascular hypertension with neuroblastoma in early infancy.


Asunto(s)
Neoplasias de las Glándulas Suprarrenales/complicaciones , Hipertensión Renovascular/etiología , Neuroblastoma/complicaciones , Obstrucción de la Arteria Renal/complicaciones , Aldosterona/sangre , Nitrógeno de la Urea Sanguínea , Catecolaminas/sangre , Femenino , Humanos , Recién Nacido , Renina/sangre
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