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1.
J Ethnopharmacol ; 333: 118462, 2024 Oct 28.
Artículo en Inglés | MEDLINE | ID: mdl-38942158

RESUMEN

ETHNOPHARMACOLOGICAL RELEVANCE: Rhapontici Radix ethanol extract (RRE) is derived from the dried root of Rhaponticum uniflorum (L.) DC belonging to the Asteraceae family. RRE exhibits significant anti-inflammatory and antioxidant properties; however, the potential of RRE in mastitis treatment requires further investigation. AIM OF THIS STUDY: This research was performed to examine the protective properties of RRE against mastitis and the mechanisms underlying the effects of RRE. MATERIAL AND METHODS: RRE components were analyzed by HPLC-MS/MS and DPPH methods. Isochlorogenic acid B (ICAB) was obtained commercially. MTT assay was utilized to assess RRE or ICAB cytotoxicity in bovine mammary alveolar (MAC-T) cells. Immunohistochemistry were used to investigate the pathological alterations in mammary tissue. The protein levels of inflammatory cytokines and mediators were analyzed using ELISA, and the expression of MAPK and NF-κB signaling pathways, as well as p65 nuclear translocation, were analyzed through Western blotting and immunofluorescence techniques, respectively. Target proteins of RRE were screened by RNA-seq and tandem mass tag analyses. Protein interaction was revealed and confirmed using co-immunoprecipitation and CRISPR/Cas9-based knockdown and overexpression of target genes. RESULTS: ICAB was revealed as one of the main components in RRE, and it was responsible for 84.33% of RRE radical scavenging activity. Both RRE and ICAB mitigated the infiltration of T lymphocytes in the mammary glands of mice, leading to decreased levels of inflammatory mediators (COX-2 and iNOS) and cytokines (TNF-α, IL-6, and IL-1ß) in lipopolysaccharide (LPS)-induced MAC-T cells. Furthermore, RRE and ICAB suppressed the LPS-induced phosphorylation of NF-κB inhibitor and p65, thereby impeding p65 nuclear translocation in mouse mammary glands and MAC-T cells. In addition, RRE and ICAB attenuated the LPS-triggered activation of c-Jun N-terminal kinase 1/2, p38, and extracellular regulated protein kinase 1/2. Importantly, co-treated with LPS and ICAB in MAC-T cells, an upregulation of G-protein coupled receptor 161 (GPR161) and transmembrane protein 59 (TMEM59) was observed; the interact between TMEM59 and was found, leading to inhibition of NF-κB activity and inflammatory cytokine production. CONCLUSION: ICAB is a prominent antioxidant in RRE. RRE and ICAB reduce mammary inflammation via MAPK and NF-κB pathways and the interaction between TMEM59 and GPR161 mediates the control of ICAB in NF-κB signaling.


Asunto(s)
Antiinflamatorios , Mastitis , Extractos Vegetales , Receptores Acoplados a Proteínas G , Animales , Femenino , Extractos Vegetales/farmacología , Extractos Vegetales/química , Antiinflamatorios/farmacología , Antiinflamatorios/química , Mastitis/tratamiento farmacológico , Mastitis/metabolismo , Ratones , Receptores Acoplados a Proteínas G/metabolismo , Receptores Acoplados a Proteínas G/genética , Bovinos , Ratones Endogámicos BALB C , Proteínas de la Membrana/metabolismo , Proteínas de la Membrana/genética , Citocinas/metabolismo , Raíces de Plantas/química , Glándulas Mamarias Animales/efectos de los fármacos , Glándulas Mamarias Animales/patología , Línea Celular , FN-kappa B/metabolismo
2.
J Genet ; 1022023.
Artículo en Inglés | MEDLINE | ID: mdl-37850386

RESUMEN

The formate dehydrogenase (FDH) is regarded as a universal stress protein involved in various plant abiotic stress responses. This study aims to ascertain GmFDH function in conferring tolerance to aluminum (Al) stress. The bioinformatics analysis demonstrates that GmFDH from Tamba black soybean (TBS) encodes FDH. Quantitative reverse transcription-PCR (qRT-PCR) showed that GmFDH expression was induced by Al stress with a concentration-time-specific pattern. Moreover, Al stress promotes formate content and activates FDH activity. Further studies revealed that GmFDH overexpression alleviated root growth of tobacco under Al stress inhibition and reduced Al and ROS accumulation in roots. In addition, transgenic tobacco had much more root citrate exudation and much higher activity of antioxidant enzymes than wild type. Moreover, under Al stress, NtMATE and NtALS3 expression showed no changes in wild type and overexpression lines, suggesting that here the known Al-resistant mechanisms are not involved. However citrate synthase activity is higher in transgenic tobaccos than that of wild type, which might be the reason for citrate secretion increase. Thus, the increased Al tolerance of GmFDH overexpression lines is likely attributable to enhanced activities of antioxidant enzymes and promoting citrate secretion. Taken together, our findings advance understanding of higher plant Al toxicity mechanisms and suggest a possible new route towards the improvement of plant growth under Al stress.


Asunto(s)
Aluminio , Nicotiana , Nicotiana/genética , Aluminio/toxicidad , Aluminio/metabolismo , Formiato Deshidrogenasas/genética , Formiato Deshidrogenasas/metabolismo , Antioxidantes , Plantas Modificadas Genéticamente , Citratos/metabolismo , Raíces de Plantas , Regulación de la Expresión Génica de las Plantas , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo
3.
BMC Vet Res ; 18(1): 320, 2022 Aug 19.
Artículo en Inglés | MEDLINE | ID: mdl-35986317

RESUMEN

BACKGROUND: The application of plant extracts has received great interest for the treatment of bovine mastitis. Isoliquiritigenin (ISL) is a rich dietary flavonoid that has significant antioxidative, anti-inflammatory and anticancer activities. This study was conducted to explore the protective efficacy and related mechanism of ISL against lipopolysaccharide (LPS)-stimulated oxidation and inflammation in bovine mammary epithelial cells (MAC-T) by in vitro experiments. RESULTS: Real-time PCR and ELISA assays indicated that ISL treatment at 2.5, 5 and 10 µg/mL significantly reduced the mRNA and protein expression of the oxidative indicators cyclooxygenase-2 and inducible nitric oxide synthase (P < 0.01), and of the inflammatory cytokines interleukin-6 (P < 0.05), interleukin-1ß (P < 0.01) and tumor necrosis factor-α (P < 0.01) in LPS-stimulated MAC-T cells. Moreover, Western blotting and immunofluorescence tests indicated that the phosphorylation levels of nuclear factor kappa (NF-κB) p65 and the inhibitor of NF-κB were significantly decreased by ISL treatment, thus blocking the nuclear transfer of NF-κB p65. In addition, ISL attenuated the phosphorylation levels of p38, extracellular signal-regulated kinase and c-jun NH2 terminal kinase. CONCLUSIONS: Our data demonstrated that ISL downregulated the LPS-induced inflammatory response in MAC-T cells. The anti-inflammatory and antioxidative activity of ISL involves the NF-κB and MAPK cascades.


Asunto(s)
Lipopolisacáridos , FN-kappa B , Animales , Antiinflamatorios/farmacología , Bovinos , Chalconas , Femenino , Lipopolisacáridos/toxicidad , FN-kappa B/metabolismo , Óxido Nítrico Sintasa de Tipo II/genética , Linfocitos T
4.
J Dairy Sci ; 104(12): 12925-12938, 2021 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-34593235

RESUMEN

Epicatechin (EC) has significant antiinflammation, antioxidation, and anticancer activities. It also provides a new alternative treatment for mastitis, which can result in great economic losses in the dairy industry if left untreated. The purpose of this study was to investigate the anti-inflammatory effects of EC on mastitis and the underlying mechanism using in vivo and in vitro systems. The use of ELISA and immunohistochemistry assays showed that EC treatment at 1.5, 7.5, 15, and 30 mg/mL decreased protein expression of inflammatory mediators, including cyclooxygenase-2 and inducible nitric oxide synthase; inflammatory cytokines, which were composed of IL-1ß, TNF-α, and IL-6 in lipopolysaccharide (LPS)-stimulated bovine mammary epithelial cell line (MAC-T); and mouse mammary gland, together with reduced filtration of T lymphocytes in the mouse mammary gland. Furthermore, EC treatment reduced LPS-induced phosphorylation levels of p65 and inhibitor of NF-κB, and blocked nuclear translocation of p65 as revealed by western blot and immunofluorescence test in MAC-T cells and the mouse mammary gland. Epicatechin also attenuated LPS-induced phosphorylation levels of mitogen-activated protein kinase members (i.e., p38, c-Jun N-terminal kinase 1/2 and extracellular regulated protein kinases 1/2). Using RNA-seq and tandem mass tag analyses, upregulation of TMEM35A and TMPO proteins was disclosed in MAC-T cells cotreated with LPS and EC. Although clustered regularly interspaced short palindromic repeats/Cas9-based knockdown of TMEM35A and TMPO attenuated abundance of phosphorylated (p)-p65, p-p38, TNF-α, and iNOS, overexpression of TMEM35A reversed EC-mediated effects in TMPO knockdown cells. Moreover, interaction between TMEM35A and TMPO was detected using the co-immunoprecipitation method. In conclusion, our data demonstrated that EC inhibited LPS-induced inflammatory response in MAC-T cells and the mouse mammary gland. Importantly, TMEM35A mediated the transmembrane transport of EC, and the interaction between TMEM35A and TMPO inhibited MAPK and NF-κB pathways.


Asunto(s)
Catequina , Enfermedades de los Bovinos , Proteínas de la Membrana , Enfermedades de los Roedores , Timopoyetinas , Animales , Antiinflamatorios/uso terapéutico , Catequina/farmacología , Bovinos , Óxidos N-Cíclicos , Células Epiteliales/metabolismo , Femenino , Inflamación/tratamiento farmacológico , Inflamación/veterinaria , Lipopolisacáridos , Proteínas de la Membrana/genética , Proteínas de la Membrana/metabolismo , Ratones , FN-kappa B/metabolismo , Óxido Nítrico Sintasa de Tipo II/metabolismo , Timopoyetinas/genética , Timopoyetinas/metabolismo
5.
J Microbiol Biotechnol ; 30(10): 1458-1466, 2020 Oct 28.
Artículo en Inglés | MEDLINE | ID: mdl-32876071

RESUMEN

Oligomeric proanthocyanidins (OPCs), classified as condensed tannins, have significant antioxidation, anti-inflammation and anti-cancer effects. This study was performed to investigate the anti-inflammatory effects of OPCs and the mechanism underlying these effects in lipopolysaccharide (LPS)-stimulated bovine mammary epithelial cells (MAC-T). Real-time PCR and ELISA assays indicated that OPC treatment at 1, 3 and 5 µg/ml significantly reduced the mRNA and protein, respectively, of oxidant indicators cyclooxygenase-2 (COX-2) (p < 0.05) and inducible nitric oxide synthase (iNOS) (p < 0.01) as well as inflammation cytokines interleukin (IL)-6 (p < 0.01), IL-1ß (p < 0.01) and tumor necrosis factor-α (TNF-α) (p < 0.05) in LPS-induced MAC-T cells. Moreover, OPCs downregulated LPSinduced phosphorylation of p65 and inhibitor of nuclear factor kappa B (NF-κB) (IκB) in the NF-κB signaling pathway (p < 0.01), and they inhibited p65 translocation from the cytoplasm to the nucleus as revealed by immunofluorescence test and western blot. Additionally, OPCs decreased phosphorylation of p38, extracellular signal regulated kinase and c-jun NH2-terminal kinase in the MAPK signaling pathway (p < 0.01). In conclusion, the anti-inflammatory and antioxidant activities of OPCs involve NF-κB and MAPK signaling pathways, thus inhibiting expression of pro-inflammatory factors and oxidation indicators. These findings provide novel experimental evidence for the further practical application of OPCs in prevention and treatment of bovine mastitis.


Asunto(s)
Antiinflamatorios/farmacología , Antioxidantes/farmacología , Lipopolisacáridos/efectos adversos , Proantocianidinas/farmacología , Linfocitos T/efectos de los fármacos , Animales , Bovinos , Supervivencia Celular/efectos de los fármacos , Ciclooxigenasa 2/metabolismo , Células Epiteliales/efectos de los fármacos , Células Epiteliales/metabolismo , Inflamación/terapia , Interleucina-1beta/metabolismo , Interleucina-6/metabolismo , Sistema de Señalización de MAP Quinasas , FN-kappa B/antagonistas & inhibidores , FN-kappa B/metabolismo , Óxido Nítrico Sintasa de Tipo II/metabolismo , Fosforilación/efectos de los fármacos , Linfocitos T/metabolismo , Factor de Necrosis Tumoral alfa/metabolismo
6.
PLoS One ; 15(8): e0237845, 2020.
Artículo en Inglés | MEDLINE | ID: mdl-32813721

RESUMEN

Aluminum (Al3+) toxicity is one of the most important limitations to agricultural production worldwide. The overall response of plants to Al3+ stress has been documented, but the contribution of protein phosphorylation to Al3+ detoxicity and tolerance in plants is unclear. Using a combination of tandem mass tag (TMT) labeling, immobilized metal affinity chromatography (IMAC) enrichment and liquid chromatography-tandem mass spectrometry (LC-MS/MS), Al3+-induced phosphoproteomic changes in roots of Tamba black soybean (TBS) were investigated in this study. The Data collected in this study are available via ProteomeXchange with the identifier PXD019807. After the Al3+ treatment, 189 proteins harboring 278 phosphosites were significantly changed (fold change > 1.2 or < 0.83, p < 0.05), with 88 upregulated, 96 downregulated and 5 up-/downregulated. Enrichment and protein interaction analyses revealed that differentially phosphorylated proteins (DPPs) under the Al3+ treatment were mainly related to G-protein-mediated signaling, transcription and translation, transporters and carbohydrate metabolism. Particularly, DPPs associated with root growth inhibition or citric acid synthesis were identified. The results of this study provide novel insights into the molecular mechanisms of TBS post-translational modifications in response to Al3+ stress.


Asunto(s)
Aluminio/toxicidad , Glycine max/metabolismo , Fosfoproteínas/metabolismo , Proteínas de Plantas/metabolismo , Proteómica , Citratos/metabolismo , Fosforilación/efectos de los fármacos , Raíces de Plantas/efectos de los fármacos , Raíces de Plantas/metabolismo , Biosíntesis de Proteínas/efectos de los fármacos , Mapas de Interacción de Proteínas/efectos de los fármacos , Procesamiento Proteico-Postraduccional/efectos de los fármacos , Transducción de Señal/efectos de los fármacos , Glycine max/efectos de los fármacos , Estrés Fisiológico/efectos de los fármacos , Transcripción Genética/efectos de los fármacos
7.
PeerJ ; 8: e9312, 2020.
Artículo en Inglés | MEDLINE | ID: mdl-32566407

RESUMEN

Aluminum (Al) toxicity in acid soil is a worldwide agricultural problem that inhibits crop growth and productivity. However, the signal pathways associated with Al tolerance in plants remain largely unclear. In this study, tandem mass tag (TMT)-based quantitative proteomic methods were used to identify the differentially expressed plasma membrane (PM) proteins in Tamba black soybean (TBS) root tips under Al stress. Data are available via ProteomeXchange with identifier PXD017160. In addition, parallel reaction monitoring (PRM) was used to verify the protein quantitative data. The results showed that 907 PM proteins were identified in Al-treated plants. Among them, compared to untreated plants, 90 proteins were differentially expressed (DEPs) with 46 up-regulated and 44 down-regulated (fold change > 1.3 or < 0.77, p < 0.05). Functional enrichment based on GO, KEGG and protein domain revealed that the DEPs were associated with membrane trafficking and transporters, modifying cell wall composition, defense response and signal transduction. In conclusion, our results highlight the involvement of GmMATE13, GmMATE75, GmMATE87 and H+-ATPase in Al-induced citrate secretion in PM of TBS roots, and ABC transporters and Ca2+ have been implicated in internal detoxification and signaling of Al, respectively. Importantly, our data provides six receptor-like protein kinases (RLKs) as candidate proteins for further investigating Al signal transmembrane mechanisms.

8.
Gene ; 739: 144512, 2020 May 20.
Artículo en Inglés | MEDLINE | ID: mdl-32112983

RESUMEN

Pleckstrin homology-like domain family A member 2 (PHLDA2) is essential for placental development in mammals. This study was conducted to investigate transcriptional regulation of goat PHLDA2 in the placenta. Real-time PCR and Western blot analyses showed different expression of the PHLDA2 in goat placentas during gestation with highest expression at 30 and 45 days post coitus (P < 0.05). Luciferase reporter assays demonstrated the highest promoter activity in the region of -1023/+20 (P < 0.05). A CpG island was defined within -631/+379 region, where lower level of CpG-methylation was detected with bisulfite sequencing PCR in the placenta than that in the spleen and liver (P < 0.05). Meanwhile, in vitro experiments showed that 5-AzaC enhanced the gene expression in a dose-dependent manner. Site-directed mutation in vitro demonstrated that transcription factor Ying-yang 1 (YY1) had an inhibitory effect on the PHLDA2 expression, and the inhibition was further confirmed with overexpression and siRNA constructs of YY1. ChIP and RE-ChIP analyses further identified the binding of YY1 to the PHLDA2 promoter by interaction with histone deacetylase 1 (HDAC1) and HDAC3. This study uncovers the negative regulation of the CpG-methylation and YY1 on goat PHLDA2 expression. YY1 prefers binding to CpG-methylation sequences, and inhibits goat PHLDA2 expression via recruiting HDAC1 and 3.


Asunto(s)
Regulación de la Expresión Génica , Cabras/genética , Histona Desacetilasa 1/metabolismo , Histona Desacetilasas/metabolismo , Proteínas Nucleares/metabolismo , Factor de Transcripción YY1/metabolismo , Animales , Islas de CpG/genética , Metilación de ADN , Femenino , Histona Desacetilasa 1/genética , Histona Desacetilasas/genética , Proteínas Nucleares/genética , Placenta , Embarazo , Regiones Promotoras Genéticas/genética , Factor de Transcripción YY1/genética
9.
Ecol Evol ; 8(10): 5111-5123, 2018 May.
Artículo en Inglés | MEDLINE | ID: mdl-29876086

RESUMEN

The objective of this study was to assess the genetic diversity and population structure of goats in the Yangtze River region using microsatellite and mtDNA to better understand the current status of those goat genetic diversity and the effects of natural landscape in fashion of domestic animal genetic diversity. The genetic variability of 16 goat populations in the littoral zone of the Yangtze River was estimated using 21 autosomal microsatellites, which revealed high diversity and genetic population clustering with a dispersed geographical distribution. A phylogenetic analysis of the mitochondrial D-loop region (482 bp) was conducted in 494 goats from the Yangtze River region. In total, 117 SNPs were reconstructed, and 173 haplotypes were identified, 94.5% of which belonged to lineages A and B. Lineages C, D, and G had lower frequencies (5.2%), and lineage F haplotypes were undetected. Several high-frequency haplotypes were shared by different ecogeographically distributed populations, and the close phylogenetic relationships among certain low-frequency haplotypes indicated the historical exchange of genetic material among these populations. In particular, the lineage G haplotype suggests that some west Asian goat genetic material may have been transferred to China via Muslim migration.

10.
Sci Rep ; 8(1): 6072, 2018 04 17.
Artículo en Inglés | MEDLINE | ID: mdl-29666506

RESUMEN

Stylo has a great potential for Al3+ resistance in acidic soils through secretion of citrate from the roots. To get insight into the molecular mechanisms responsible, transcriptomic changes were investigated in the roots after treatment with T01 (-Al3+, pH6.0), T02 (-Al3+, pH4.3) and T03 (50 µM AlCl3, pH4.3). In total, 83,197 unigenes generated from 130,933 contigs were obtained. Of them, 282, 148 and 816 differentially expressed unigenes (DEGs) were revealed in T01_vs_T02, T02_vs_T03 and T01_vs_T03 comparison, respectively (FDR < 0.001, log2FC > 2). DEGs by Al3+ were related to G-proteins, diacyglycerol and inositol metabolism, calcium-signaling, transcription regulation, protein modification and transporters for detoxification of Al3+. Additionally, Al3+ facilitates citrate synthesis via modifying gene expression of pathways responsible for citrate metabolism. Overall, Al3+ resistance in stylo involves multiple strategies and enhancement of citrate anabolism. The Al3+ signal transmits through heterotrimeric G-proteins, phospholipase C, inositol triphosphate, diacylglycerol, Ca2+ and protein kinases, thereby activating transcription and anion channels in plasma membrane, and resulting in citrate secretion from stylo roots.


Asunto(s)
Aluminio/metabolismo , Ácido Cítrico/metabolismo , Fabaceae/metabolismo , Proteínas de Plantas/metabolismo , Raíces de Plantas/metabolismo , Adaptación Biológica , Fabaceae/genética , Regulación de la Expresión Génica de las Plantas , Redes y Vías Metabólicas , Proteínas de Plantas/genética , Raíces de Plantas/genética , Análisis de Secuencia de ARN , Transcriptoma
11.
Mitochondrial DNA A DNA Mapp Seq Anal ; 27(5): 3171-2, 2016 09.
Artículo en Inglés | MEDLINE | ID: mdl-25731719

RESUMEN

Dazu Black goat is an indigenous goat genetic resource in Southwest of China. Here, we describe its complete mitochondrial genome sequence. The mitogenome is 16,641 bp in length, consisting of 13 protein-coding genes, 22 transfer RNA (tRNA) genes, 2 ribosomal RNA (rRNA) genes and a control region. As in other mammals, most mitochondrial genes are encoded on the heavy strand, except for ND6 and eight tRNA genes, which are encoded on the light strand. Its overall base composition is A: 33.5%, T: 27.3%, C: 26.1% and G: 13.1%. The complete mitogenome of the indigenous goat could provide important data to further explore the taxonomic status of the subspecies and also provide a starting point for further phylogenetic studies.


Asunto(s)
Genoma Mitocondrial , Cabras/genética , Animales , Composición de Base , NADH Deshidrogenasa/genética , Sistemas de Lectura Abierta , Filogenia , ARN Ribosómico/genética , ARN de Transferencia/genética
12.
Mitochondrial DNA A DNA Mapp Seq Anal ; 27(5): 3063-4, 2016 09.
Artículo en Inglés | MEDLINE | ID: mdl-25740215

RESUMEN

The Chuanzhong black goat (Capra hircus) is a breed native to southwest of China. Its complete mitochondrial genome is 16,641 nt in length, consisting of 13 protein-coding genes, 22 transfer RNA (tRNA) genes, two ribosomal RNA (rRNA) genes, and a non-coding control region. As in other mammals, most mitochondrial genes are encoded on the heavy strand, except for ND6 and eight tRNA genes, which are encoded on the light strand. Its overall base composition is A: 33.5%, T: 27.3%, C: 26.1%, and G: 13.1%. The complete mitogenome of the Chinese indigenous breed of goat could provide a basic data for further phylogenetics analysis.


Asunto(s)
Genoma Mitocondrial , Cabras/clasificación , Cabras/genética , Animales , Composición de Base , Cruzamiento , China , Genes Mitocondriales , Tamaño del Genoma , Sistemas de Lectura Abierta , Filogenia , Análisis de Secuencia de ADN , Secuenciación Completa del Genoma
13.
Mitochondrial DNA A DNA Mapp Seq Anal ; 27(5): 3308-9, 2016 09.
Artículo en Inglés | MEDLINE | ID: mdl-25693713

RESUMEN

Here, we describe the complete mitochondrial genome sequences of Jining Gray goat, Fushun black goat, Youzhou black-skin goat, and Hechuan white goat. The mitogenome of those four goats consisted of 16,640 nt, consisting of 13 protein-coding genes, 22 transfer RNA (tRNA) genes, 2 ribosomal RNA (rRNA) genes and a control region. As in other mammals, most mitochondrial genes are encoded on the heavy strand, except for ND6 and eight tRNA genes, which are encoded on the light strand. The complete mitogenome of these four local breeds of Chinese native goats could provide an important data to further breed improvement and animal genetics resource conservation in China.


Asunto(s)
Genoma Mitocondrial , Cabras/genética , Animales , ADN Intergénico/química , ADN Intergénico/genética , Sistemas de Lectura Abierta , ARN Ribosómico/genética , ARN de Transferencia/genética
14.
Mitochondrial DNA A DNA Mapp Seq Anal ; 27(5): 3389-90, 2016 09.
Artículo en Inglés | MEDLINE | ID: mdl-26704695

RESUMEN

The Hechuan white goat (Capra hircus), an indigenous of China. Here, we describe the complete mitochondrial genome sequence of Hechuan white goat. The mitogenome is 16,640 nt in length, consisting of 13 protein-coding genes, 22 transfer RNA (tRNA) genes, 2 ribosomal RNA (rRNA) genes and a control region. As in other mammals, most mitochondrial genes are encoded on the heavy strand, except for ND6 and eight tRNA genes, which are encoded on the light strand. Its overall base composition is A: 33.5%, T: 27.3%, C: 26.1% and G: 13.1%. The complete mitogenome of the local subspecies of Hechuan white goat could provide an important data to further explore the breed improvement in Chinese goat.


Asunto(s)
Genoma Mitocondrial , Cabras/genética , Animales , Composición de Base , NADH Deshidrogenasa/genética , Sistemas de Lectura Abierta , ARN Ribosómico/genética , ARN de Transferencia/genética
15.
Mitochondrial DNA A DNA Mapp Seq Anal ; 27(5): 3393-4, 2016 09.
Artículo en Inglés | MEDLINE | ID: mdl-26702472

RESUMEN

The Youzhou black-skin goat (Capra hircus), an indigenous breed of Chinese southwest. Here, we describe the complete mitochondrial genome sequence of Hechuan white goat. The mitogenome is 16,640 nt in length, consisting of 13 protein-coding genes, 22 transfer RNA (tRNA) genes, 2 ribosomal RNA (rRNA) genes and a control region. As in other mammals, most mitochondrial genes are encoded on the heavy strand, except for ND6 and eight tRNA genes, which are encoded on the light strand. Its overall base composition is A: 33.5%, T: 27.3%, C: 26.1% and G: 13.1%. The complete mitogenome of the local subspecies of Hechuan white goat could provide an important data to further breed improvement and animal genetics resource conservation in China.


Asunto(s)
Genoma Mitocondrial , Cabras/genética , Animales , Composición de Base , Sistemas de Lectura Abierta , ARN Ribosómico/genética , ARN de Transferencia/genética
16.
Gene ; 547(1): 63-9, 2014 Aug 15.
Artículo en Inglés | MEDLINE | ID: mdl-24930731

RESUMEN

MAGEL2 (melanoma antigen-like gene 2) is essential for circadian function, metabolism and reproduction in mammals. This study was conducted to investigate transcriptional regulation and functional importance in the placenta of porcine MAGEL2. Quantitative real-time PCR showed that MAGEL2 was highly expressed in porcine hypothalamus, pituitary and placenta (P<0.05). The gene was down-regulated in Meishan but up-regulated in Duroc placentas from 25 days post-coitum (dpc) to 105 dpc (P<0.01). Dual luciferase assay demonstrated that the region -151/+110 had the highest promoter activity. Of the g. -712C>G and g. -708T>C polymorphisms in MAGEL2 promoter, -712C and -708T were observed to be predominant in Large White, Landrace and Duroc populations, while -712G and -708C were predominant in Meishan and Rongchang populations. Moreover, -712C>G and -708T>C had significant effects on MAGEL2 transcription (P<0.05) and placental efficiency (P<0.01). In conclusion, -151/+110 harbors the basal promoter of porcine MAGEL2. The region upstream the basal promoter contains repressive cis-elements. And, MAGEL2 is essential in porcine placenta.


Asunto(s)
Placenta/metabolismo , Regiones Promotoras Genéticas , Proteínas/genética , Animales , Secuencia de Bases , Inmunoprecipitación de Cromatina , ADN/genética , Femenino , Frecuencia de los Genes , Humanos , Hipotálamo/metabolismo , Datos de Secuencia Molecular , Hipófisis/metabolismo , Polimorfismo de Nucleótido Simple , Embarazo , Reacción en Cadena en Tiempo Real de la Polimerasa , Homología de Secuencia de Ácido Nucleico , Porcinos
17.
J Biomed Biotechnol ; 2012: 946527, 2012.
Artículo en Inglés | MEDLINE | ID: mdl-22500112

RESUMEN

CDKN1C and NAP1L4 in human CDKN1C/KCNQ1OT1 imprinted domain are two key candidate genes responsible for BWS (Beckwith-Wiedemann syndrome) and cancer. In order to increase understanding of these genes in pigs, their cDNAs are characterized in this paper. By the IMpRH panel, porcine CDKN1C and NAP1L4 genes were assigned to porcine chromosome 2, closely linked with IMpRH06175 and with LOD of 15.78 and 17.94, respectively. By real-time quantitative RT-PCR and polymorphism-based method, tissue and allelic expression of both genes were determined using F1 pigs of Rongchang and Landrace reciprocal crosses. The transcription levels of porcine CDKN1C and NAP1L4 were significantly higher in placenta than in other neonatal tissues (P < 0.01) although both genes showed the highest expression levels in the lung and kidney of one-month pigs (P < 0.01). Imprinting analysis demonstrated that in pigs, CDKN1C was maternally expressed in neonatal heart, tongue, bladder, ovary, spleen, liver, skeletal muscle, stomach, small intestine, and placenta and biallelically expressed in lung and kidney, while NAP1L4 was biallelically expressed in the 12 neonatal tissues examined. It is concluded that imprinting of CDKN1C is conservative in mammals but has tissue specificity in pigs, and imprinting of NAP1L4 is controversial in mammalian species.


Asunto(s)
Inhibidor p57 de las Quinasas Dependientes de la Ciclina/genética , Impresión Genómica , Proteínas Nucleares/genética , Animales , Animales Recién Nacidos , Secuencia de Bases , Inhibidor p57 de las Quinasas Dependientes de la Ciclina/química , Inhibidor p57 de las Quinasas Dependientes de la Ciclina/metabolismo , Femenino , Regulación del Desarrollo de la Expresión Génica , Escala de Lod , Masculino , Datos de Secuencia Molecular , Proteínas Nucleares/metabolismo , Especificidad de Órganos , Alineación de Secuencia , Porcinos
18.
J Appl Genet ; 52(2): 219-23, 2011 May.
Artículo en Inglés | MEDLINE | ID: mdl-21327595

RESUMEN

The mRNA differential display technique was performed to investigate the differences in gene expression in the liver tissues from Meishan and Large White pigs. One novel gene that was differentially expressed was identified through semi-quantitative reverse transcriptase polymerase chain reaction (RT-PCR) and the cDNA complete sequence was then obtained using the rapid amplification of cDNA ends (RACE) method. The nucleotide sequence of the gene is not homologous to any of the known porcine genes. The sequence prediction analysis revealed that the open reading frame of this gene encoding a protein of 501 amino acids has high homology with the lipase, hepatic (LIPC) of seven species--cattle (82%), rhesus monkey (79%), chimpanzee (78%), rabbit (77%), human (78%), mouse (73%) and rat (72%)--so that it can be defined as the swine LIPC gene. Phylogenetic analysis revealed that the swine LIPC gene has a closer genetic relationship with the LIPC of cattle. Tissue expression profile analysis indicated that the swine LIPC gene is also differentially expressed in other detected tissues from Meishan and Large White pigs. Our experiment suggested that the swine LIPC gene might play an important role in the superabundant fat deposition of Chinese pigs.


Asunto(s)
Lipasa/genética , Hígado/metabolismo , Porcinos/genética , Adiposidad/genética , Animales , Distribución de la Grasa Corporal , Perfilación de la Expresión Génica , Regulación de la Expresión Génica , Lipasa/clasificación , Especificidad de Órganos/genética , Filogenia , Análisis de Secuencia de ADN
19.
Int J Biol Sci ; 6(7): 627-38, 2010 Oct 11.
Artículo en Inglés | MEDLINE | ID: mdl-20975821

RESUMEN

To gain insight into the regulation mechanism associated with the rapid gain in skeletal muscle during neonatal period, gene expression profiles of skeletal muscle of nursing pigs was investigated using Affymetrix Porcine GeneChip. A total of 1094 transcripts were detected as differential expression over time course tested (p<0.01, q<0.05). With combinative use of partitioning around medoid and hierarchical clustering, three clusters of transcripts with distinct temporal expression were defined. Gene functional categories and pathways, particularly involved in cell signaling, cell cycle, cell adhesion, ECM-receptor interaction, glycolysis, protein synthesis and degradation, and intracellular transport, were identified. Moreover, we showed 49 of the differentially expressed genes within published QTL regions or with marked deletion effects. Our study demonstrates previously uncharacterized changes in transcription accompanying early postnatal growth of skeletal muscle of pigs. It has highlighted potential cascades and important candidates for further investigation on controlling of postnatal muscle growth.


Asunto(s)
Perfilación de la Expresión Génica , Músculo Esquelético/metabolismo , Porcinos/metabolismo , Animales , Análisis por Conglomerados , Análisis de Secuencia por Matrices de Oligonucleótidos , Sitios de Carácter Cuantitativo/genética , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa , Porcinos/genética
20.
Genet Sel Evol ; 39(5): 599-607, 2007.
Artículo en Inglés | MEDLINE | ID: mdl-17897599

RESUMEN

Although expression and epigenetic differences of imprinted genes have been extensively characterised in man and the mouse, little is known on livestock species. In this study, the polymorphism-based approach was used to detect the imprinting status of NNAT and DIRAS3 genes in five heterozygous pigs (based on SNP) of Large White and Meishan F(1) hybrids. The results show that both genes were paternally expressed in all the tested tissues (heart, liver, spleen, lung, kidney, stomach, small intestine, skeletal muscle, fat, uterus, ovary and pituitary). In addition, the NNAT gene had two transcripts in all tested tissues, which is consistent with its counterpart in man and cattle.


Asunto(s)
Impresión Genómica , Proteínas de la Membrana/genética , Proteínas del Tejido Nervioso/genética , Sus scrofa/genética , Proteínas de Unión al GTP rho/genética , Animales , Secuencia de Bases , Bovinos , ADN/genética , Cartilla de ADN/genética , Femenino , Expresión Génica , Humanos , Masculino , Datos de Secuencia Molecular , Polimorfismo de Nucleótido Simple , Especificidad de la Especie , Distribución Tisular
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