Evidence and Structural Insights into a Ligand-Mediated Phase Transition in the Solvated Ligand Shell of Quantum Dots.

As synthesized, nanocrystal surfaces are typically covered in coordinating organic ligands, and the degree of packing and order of these ligands are ongoing questions in the field of colloidal nanocrystals, particularly in the solution state. Recently, isothermal titration calorimetry coupled with 1H NMR has been used to probe ligand exchanges on colloidal quantum dots, revealing the importance of the composition of the ligand shell on exchange thermodynamics. Previous work has shown that the geometry and length of a ligand's aliphatic chain can influence the thermodynamics of exchange. This has been attributed to interligand interactions, and the use of a modified Ising model simulation to account for these collective effects has been critical in describing these reactions. In this report, we explore the reaction between indium phosphide quantum dots and zinc chloride on a size series of nanocrystals capped with two different lengths of aliphatic, straight-chain carboxylate ligands to investigate the effect that nanocrystal size has on these interligand interactions. We demonstrate that interligand interactions increase as the nanocrystal size increases, changing the thermodynamics of the ligand exchange reaction. Critically, we show that a self-consistent model of these ligand exchanges does not fit the data without the use of a phase transition term in the model and that the strength of this phase transition depends on the nanocrystal size. Combined with solution state X-ray diffraction, these results provide indirect evidence that ligands are ordered on nanocrystals in the solution state.

Observation of negative surface and interface energies of quantum dots.

Surface energy is a fundamental property of materials and is particularly important in describing nanomaterials where atoms or molecules at the surface constitute a large fraction of the material. Traditionally, surface energy is considered to be a positive quantity, where atoms or molecules at the surface are less thermodynamically stable than their counterparts in the interior of the material because they have fewer bonds or interactions at the surface. Using calorimetric methods, we show that the surface energy is negative in some prototypical colloidal semiconductor nanocrystals, or quantum dots with organic ligand coatings. This implies that the surface atoms are more thermodynamically stable than those on the interior due to the strong bonds between these atoms and surfactant molecules, or ligands, that coat their surface. In addition, we extend this work to core/shell indium phosphide/zinc sulfide nanocrystals and show that the interfacial energy between these materials is highly thermodynamically favorable in spite of their large lattice mismatch. This work challenges many of the assumptions that have guided thinking about colloidal nanomaterial thermodynamics, investigates the fundamental stability of many technologically relevant colloidal nanomaterials, and paves the way for future experimental and theoretical work on nanocrystal thermodynamics.

Development of a Predictive Multiple Reaction Monitoring (MRM) Model for High-Throughput ADME Analyses Using Learning-to-Rank (LTR) Techniques.

Multiple Reaction Monitoring (MRM) is an important MS/MS technique commonly used in drug discovery and development, allowing for the selective and sensitive quantification of compounds in complex matrices. However, compound optimization can be resource intensive and requires experimental determination of product ions for each compound. In this study, we developed a Learning-to-Rank (LTR) model to predict the product ions directly from compound structures, eliminating the requirement for MRM optimization experiments. Experimentally determined MRM conditions for 5757 compounds were used to develop the model. Using the MassChemSite software, theoretical fragments and their mass-to-charge ratios were generated, which were then matched to the experimental product ions to create a data set. Each possible fragment was ranked based on its intensity in the experimental data. Different LTR models were built on a training split. Hyperparameter selection was performed using 5-fold cross validation. The models were evaluated using the Normalized Discounted Cumulative Gain at top k (NDCG@k) and the Coverage at top k (Coverage@k) metrics. Finally, the model was applied to predict MRM conditions for a prospective set of 235 compounds in high-throughput Caco-2 permeability and metabolic stability assays, and quantification results were compared to those obtained with experimentally acquired MRM conditions. The LTR model achieved a NDCG@5 of 0.732 and Coverage@5 of 0.841 on the validation split, and its predictions led to 97% of biologically equivalent results in the Caco-2 permeability and metabolic stability assays.

Observation of ordered organic capping ligands on semiconducting quantum dots via powder X-ray diffraction.

Powder X-ray diffraction is one of the key techniques used to characterize the inorganic structure of colloidal nanocrystals. The comparatively low scattering factor of nuclei of the organic capping ligands and their propensity to be disordered has led investigators to typically consider them effectively invisible to this technique. In this report, we demonstrate that a commonly observed powder X-ray diffraction peak around [Formula: see text] observed in many small, colloidal quantum dots can be assigned to well-ordered aliphatic ligands bound to and capping the nanocrystals. This conclusion differs from a variety of explanations ascribed by previous sources, the majority of which propose an excess of organic material. Additionally, we demonstrate that the observed ligand peak is a sensitive probe of ligand shell ordering. Changes as a function of ligand length, geometry, and temperature can all be readily observed by X-ray diffraction and manipulated to achieve desired outcomes for the final colloidal system.