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1.
Pest Manag Sci ; 77(4): 1786-1795, 2021 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-33249740

RESUMEN

BACKGROUND: The brown planthopper, Nilaparvata lugens (Stål), is one of the most notorious pests of rice throughout Asia. The brown planthopper has developed high resistance to imidacloprid, a member of neonicotinoid insecticides. Several genes and mutations conferring imidacloprid resistance in N. lugens, especially in eastern and southeastern Asia populations, have been reported. Thus, the key mechanisms of imidacloprid resistance need to be examined. RESULTS: RNA-seq analyses revealed that only one cytochrome P450 monooxygenase gene, CYP6ER1, was commonly upregulated in the five resistant strains tested. Sequences of CYP6ER1, which were highly expressed in the imidacloprid-resistant strains, contained a three-nucleotide deletion in the coding region, and amino acid substitutions and deletion, compared to that in an imidacloprid-susceptible strain. RNAi-mediated gene knockdown of CYP6ER1 increased imidacloprid susceptibility in a resistant strain. Further, we established two simple and convenient PCR-based molecular diagnostic methods to detect the CYP6ER1 locus with the three-nucleotide deletion. Using these methods, the resistance of F2 progenies derived from the crosses of F1 siblings from susceptible and resistant parents was analyzed, showing that the imidacloprid resistance had a relationship to the CYP6ER1 locus with the three-nucleotide deletion. CONCLUSION: The overexpression of a variant CYP6ER1 with amino acid substitutions and deletion was involved in imidacloprid resistance in N. lugens. Based on these findings, molecular diagnostic methods have been developed and are promising tools for monitoring imidacloprid resistance in paddy fields. © 2020 Society of Chemical Industry.


Asunto(s)
Hemípteros , Insecticidas , Animales , Asia , Asia Sudoriental , Hemípteros/genética , Resistencia a los Insecticidas/genética , Insecticidas/farmacología , Neonicotinoides , Nitrocompuestos/farmacología , Patología Molecular
2.
Peptides ; 78: 99-108, 2016 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-26928903

RESUMEN

In a previous report, seven Cry1Ab-resistant strains were identified in the silkworm, Bombyx mori; these strains were shown to have a tyrosine insertion at position 234 in extracellular loop 2 of the ABC transporter C2 (BmABCC2). This insertion was confirmed to destroy the receptor function of BmABCC2 and confer the strains resistance against Cry1Ab and Cry1Ac. However, these strains were susceptible to Cry1Aa. In this report, we examined the mechanisms of the loss of receptor function of the transporter by expressing mutations in Sf9 cells. After replacement of one or two of the five amino acid residues in loop 2 of the susceptible BmABCC2 gene [BmABCC2_S] with alanine, cells still showed susceptibility, retaining the receptor function. Five mutants with single amino acid insertions at position 234 in BmABCC2 were also generated, resulting in loop 2 having six amino acids, which corresponds to replacing the tyrosine insertion in the resistant BmABCC2 gene [BmABCC2_R(+(234)Y)] with another amino acid. All five mutants exhibited loss of function against Cry1Ab and Cry1Ac. These results suggest that the amino acid sequence in loop 2 is less important than the loop size (five vs. six amino acids) or loop structure for Cry1Ab and Cry1Ac activity. Several domain-swapped mutant toxins were then generated among Cry1Aa, Cry1Ab, and Cry1Ac, which are composed of three domains. Swapped mutants containing domain II of Cry1Ab or Cry1Ac did not kill Sf9 cells expressing BmABCC2_R(+(234)Y), suggesting that domain II of the Cry toxin is related to the interaction with the receptor function of BmABCC2. This also suggests that different reactions against Bt-toxins in some B. mori strains, that is, Cry1Ab resistance or Cry1Aa susceptibility, are attributable to structural differences in domain II of Cry1A toxins.


Asunto(s)
Proteínas Bacterianas/toxicidad , Bombyx/genética , Endotoxinas/toxicidad , Proteínas Hemolisinas/toxicidad , Proteínas de Insectos/química , Resistencia a los Insecticidas/genética , Proteínas Asociadas a Resistencia a Múltiples Medicamentos/química , Secuencia de Aminoácidos , Animales , Bacillus thuringiensis/genética , Bacillus thuringiensis/patogenicidad , Toxinas de Bacillus thuringiensis , Proteínas Bacterianas/biosíntesis , Bombyx/inmunología , Bombyx/microbiología , Clonación Molecular , Endotoxinas/biosíntesis , Escherichia coli/genética , Escherichia coli/metabolismo , Expresión Génica , Proteínas Hemolisinas/biosíntesis , Interacciones Huésped-Patógeno , Proteínas de Insectos/genética , Proteínas de Insectos/metabolismo , Resistencia a los Insecticidas/inmunología , Proteína 2 Asociada a Resistencia a Múltiples Medicamentos , Proteínas Asociadas a Resistencia a Múltiples Medicamentos/genética , Proteínas Asociadas a Resistencia a Múltiples Medicamentos/metabolismo , Mutagénesis Insercional , Dominios Proteicos , Estructura Secundaria de Proteína , Receptores de Superficie Celular/biosíntesis , Proteínas Recombinantes/biosíntesis , Proteínas Recombinantes/toxicidad , Células Sf9 , Spodoptera
3.
Genome Biol Evol ; 7(9): 2623-34, 2015 Sep 02.
Artículo en Inglés | MEDLINE | ID: mdl-26338189

RESUMEN

A number of sap-sucking insects harbor endosymbionts, which are thought to play an important role in the development of their hosts. One of the most important rice pests, the brown planthopper (BPH), Nilaparvata lugens (Stål), harbors an obligatory yeast-like symbiont (YLS) that cannot be cultured in vitro. Genomic information on this YLS would be useful to better understand its evolution. In this study, we performed genome sequencing of the YLS using both 454 and Illumina approaches, generating a draft genome that shows a slightly smaller genome size and relatively higher GC content than most ascomycete fungi. A phylogenomic analysis of the YLS supported its close relationship with insect pathogens. We analyzed YLS-specific genes and the categories of genes that are likely to have changed in the YLS during its evolution. The loss of mating type locus demonstrated in the YLS sheds light on the evolution of eukaryotic symbionts. This information about the YLS genome provides a helpful guide for further understanding endosymbiotic associations in hemiptera and the symbiotic replacement of ancient bacteria with a multifunctional YLS seems to have been a successful change.


Asunto(s)
Ascomicetos/genética , Evolución Molecular , Genoma Fúngico , Hemípteros/microbiología , Simbiosis/genética , Adaptación Biológica/genética , Animales , Ascomicetos/clasificación , Genes Fúngicos , Genómica , Filogenia
4.
Insect Biochem Mol Biol ; 64: 60-7, 2015 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-26226652

RESUMEN

Nilaparvata lugens, the brown planthopper (BPH) feeds on rice phloem sap, containing high amounts of sucrose as a carbon source. Nutrients such as sugars in the digestive tract are incorporated into the body cavity via transporters with substrate selectivity. Eighteen sugar transporter genes of BPH (Nlst) were reported and three transporters have been functionally characterized. However, individual characteristics of NlST members associated with sugar transport remain poorly understood. Comparative gene expression analyses using oligo-microarray and quantitative RT-PCR revealed that the sugar transporter gene Nlst16 was markedly up-regulated during BPH feeding. Expression of Nlst16 was induced 2 h after BPH feeding on rice plants. Nlst16, mainly expressed in the midgut, appears to be involved in carbohydrate incorporation from the gut cavity into the hemolymph. Nlst1 (NlHT1), the most highly expressed sugar transporter gene in the midgut was not up-regulated during BPH feeding. The biochemical function of NlST16 was shown as facilitative glucose transport along gradients. Glucose uptake activity by NlST16 was higher than that of NlST1 in the Xenopus oocyte expression system. At least two NlST members are responsible for glucose uptake in the BPH midgut, suggesting that the midgut of BPH is equipped with various types of transporters having diversified manner for sugar uptake.


Asunto(s)
Proteínas Facilitadoras del Transporte de la Glucosa/metabolismo , Hemípteros/metabolismo , Animales , Secuencia de Bases , Expresión Génica , Proteínas Facilitadoras del Transporte de la Glucosa/química , Proteínas Facilitadoras del Transporte de la Glucosa/genética , Hemípteros/genética , Herbivoria , Proteínas de Insectos/química , Proteínas de Insectos/genética , Proteínas de Insectos/metabolismo , Datos de Secuencia Molecular , Oocitos , Oryza , Floema , Análisis de Secuencia de ADN , Análisis de Secuencia de ARN , Sacarosa/metabolismo , Xenopus
5.
PLoS One ; 10(4): e0123671, 2015.
Artículo en Inglés | MEDLINE | ID: mdl-25909947

RESUMEN

The green rice leafhopper, Nephotettix cincticeps, is a vascular bundle feeder that discharges watery and gelling saliva during the feeding process. To understand the potential functions of saliva for successful and safe feeding on host plants, we analyzed the complexity of proteinaceous components in the watery saliva of N. cincticeps. Salivary proteins were collected from a sucrose diet that adult leafhoppers had fed on through a membrane of stretched parafilm. Protein concentrates were separated using SDS-PAGE under reducing and non-reducing conditions. Six proteins were identified by a gas-phase protein sequencer and two proteins were identified using LC-MS/MS analysis with reference to expressed sequence tag (EST) databases of this species. Full -length cDNAs encoding these major proteins were obtained by rapid amplification of cDNA ends-PCR (RACE-PCR) and degenerate PCR. Furthermore, gel-free proteome analysis that was performed to cover the broad range of salivary proteins with reference to the latest RNA-sequencing data from the salivary gland of N. cincticeps, yielded 63 additional protein species. Out of 71 novel proteins identified from the watery saliva, about 60 % of those were enzymes or other functional proteins, including GH5 cellulase, transferrin, carbonic anhydrases, aminopeptidase, regucalcin, and apolipoprotein. The remaining proteins appeared to be unique and species- specific. This is the first study to identify and characterize the proteins in watery saliva of Auchenorrhyncha species, especially sheath-producing, vascular bundle-feeders.


Asunto(s)
Hemípteros/metabolismo , Proteoma , Proteómica , Saliva/metabolismo , Secuencia de Aminoácidos , Animales , ADN Complementario/genética , Hemípteros/clasificación , Hemípteros/genética , Proteínas de Insectos/química , Proteínas de Insectos/genética , Proteínas de Insectos/metabolismo , Datos de Secuencia Molecular , Peso Molecular , Especificidad de Órganos/genética , Filogenia , Dominios y Motivos de Interacción de Proteínas , Proteómica/métodos , Alineación de Secuencia , Espectrometría de Masas en Tándem , Transcripción Genética
6.
J Insect Physiol ; 80: 31-41, 2015 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-25770979

RESUMEN

Juvenile hormone (JH) regulates many physiological processes in insects. However, the signal cascades in which JH is active have not yet been fully elucidated, particularly in comparison to another major hormone ecdysteroid. Here we identified two JH inducible transcription factors as candidate components of JH signaling pathways in the silkworm, Bombyx mori. DNA microarray analysis showed that expression of two transcription factor genes, E75 and Enhancer of split mß (E(spl)mß), was induced by juvenile hormone I (JH I) in NIAS-Bm-aff3 cells. Real time RT-PCR analysis confirmed that expression of four E75 isoforms (E75A, E75B, E75C and E75D) and E(spl)mß was 3-8 times greater after JH I addition. Addition of the protein synthesis inhibitor cycloheximide did not suppress JH-induced expression of the genes, indicating that they were directly induced by JH. JH-induced expression of E75 and E(spl)mß was also observed in four other B. mori cell lines and in larval hemocytes of final instar larvae. Notably, E75A expression was induced very strongly in larval hemocytes by topical application of the JH analog fenoxycarb; the level of induced expression was comparable to that produced by feeding larvae with 20-hydroxyecdysone. These results suggest that E75 and E(spl)mß are general and direct target genes of JH and that the transcription factors encoded by these genes play important roles in JH signaling.


Asunto(s)
Bombyx/genética , Proteínas de Insectos/genética , Hormonas Juveniles/metabolismo , Factores de Transcripción/genética , Regulación hacia Arriba , Secuencia de Aminoácidos , Animales , Bombyx/química , Bombyx/crecimiento & desarrollo , Bombyx/metabolismo , Ecdisteroides/biosíntesis , Ecdisterona/biosíntesis , Regulación del Desarrollo de la Expresión Génica , Proteínas de Insectos/química , Proteínas de Insectos/metabolismo , Larva/química , Larva/genética , Larva/crecimiento & desarrollo , Larva/metabolismo , Datos de Secuencia Molecular , Alineación de Secuencia , Factores de Transcripción/química , Factores de Transcripción/metabolismo
7.
Proc Natl Acad Sci U S A ; 111(20): 7433-7, 2014 May 20.
Artículo en Inglés | MEDLINE | ID: mdl-24799707

RESUMEN

Symbiotic bacteria are commonly associated with cells and tissues of diverse animals and other organisms, which affect hosts' biology in a variety of ways. Most of these symbionts are present in the cytoplasm of host cells and maternally transmitted through host generations. The paucity of paternal symbiont transmission is likely relevant to the extremely streamlined sperm structure: the head consisting of condensed nucleus and the tail made of microtubule bundles, without the symbiont-harboring cytoplasm that is discarded in the process of spermatogenesis. Here, we report a previously unknown mechanism of paternal symbiont transmission via an intrasperm passage. In the leafhopper Nephotettix cincticeps, a facultative Rickettsia symbiont was found not only in the cytoplasm but also in the nucleus of host cells. In male insects, strikingly, most sperm heads contained multiple intranuclear Rickettsia cells. The Rickettsia infection scarcely affected the host fitness including normal sperm functioning. Mating experiments revealed both maternal and paternal transmission of the Rickettsia symbiont through host generations. When cultured with mosquito and silkworm cell lines, the Rickettsia symbiont was preferentially localized within the insect cell nuclei, indicating that the Rickettsia symbiont itself must have a mechanism for targeting nucleus. The mechanisms underlying the sperm head infection without disturbing sperm functioning are, although currently unknown, of both basic and applied interest.


Asunto(s)
Núcleo Celular/microbiología , Hemípteros/microbiología , Infecciones por Rickettsia/transmisión , Rickettsia/fisiología , Espermatozoides/microbiología , Simbiosis/fisiología , Animales , Citoplasma/metabolismo , Citoplasma/microbiología , Femenino , Transmisión Vertical de Enfermedad Infecciosa , Funciones de Verosimilitud , Masculino , Fenotipo , Filogenia , ARN Ribosómico 16S/metabolismo
8.
Biol Pharm Bull ; 37(4): 528-33, 2014.
Artículo en Inglés | MEDLINE | ID: mdl-24694601

RESUMEN

While gene products and metabolites of insect symbiotic bacteria may act as useful resources for insect-microbe studies and medicinal use, it is usually difficult to obtain the insect symbionts to some extent in quantity because most of them are unculturable. In this study, the possibility of using bacterial artificial chromosome (BAC) libraries as a heterologous gene expression tool for the discovery of novel symbiont metabolites was evaluated. A BAC library was constructed from the symbiont purified from the posterior midgut cecum of the stink bug Plautia stali. The BAC library, which consisted of 513 clones with an average insert size of 41 kb, represented greater than five-fold coverage of the genome. The ability of the BAC clones to express plural genes from large-sized insert DNA in Escherichia coli was examined by the growth of BAC-transformed leu operon-deficient DH10B cells on M9 minimal medium supplemented with glucose. Two BAC clones complemented leucine deficiency in DH10B cells; the clones contained the leu operon of the symbiont chromosome. The P. stali symbiont genes introduced into the BAC vector are functional in E. coli, and these genes are expressed in an operon unit. BAC libraries can be used to generate gene product- and metabolite-libraries, facilitating to characterize potential metabolites of the P. stali symbiont.


Asunto(s)
Cromosomas Artificiales Bacterianos/genética , Biblioteca de Genes , Hemípteros/microbiología , Simbiosis/genética , Animales , Escherichia coli/genética , Expresión Génica , Vectores Genéticos/genética
9.
J Insect Physiol ; 60: 111-7, 2014 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-24315960

RESUMEN

The brown planthopper Nilaparvata lugens (Hemiptera, Delphacidae) harbors an obligate endosymbiont called the yeastlike symbiont (YLS) in their abdominal fat body. YLS, a filamentous ascomycete belonging to the family Clavicipitaceae, does not spend any part of its life cycle outside the planthopper's body. The YLS is transferred to the next generation via transovarial transmission; it enters the epithelial plug at the posterior end of the host female's ovariole and is transferred to her offspring. In the present study, microscopic examination revealed that actin filaments play an important role in the transmission of YLS. An irregular cell protrusion on the surface of the epithelial plug facilitated the uptake of the YLS, which was then incorporated into the epithelial plug cell. Actin assembly apparently produces the protrusion and actin appears to participate in almost every stage of the process, from the entry of the YLS into the epithelial plug to its delivery to the oocyte. The epithelial plug employs a recognition system for YLS, which drastically changes the cell surface structure to enable the YLS to enter the ovariole.


Asunto(s)
Citoesqueleto de Actina/fisiología , Actinas/fisiología , Ascomicetos/fisiología , Hemípteros/microbiología , Animales , Cuerpo Adiposo/microbiología , Femenino , Microscopía Electrónica de Rastreo , Microscopía Electrónica de Transmisión , Ovario/microbiología , Simbiosis
10.
Peptides ; 53: 125-33, 2014 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-23932938

RESUMEN

The genes encoding neuropeptides, neurohormones and their putative G-protein coupled receptors were identified in the brown planthopper (BPH), Nilaparvata lugens (Stål) by transcriptome analysis (RNA-seq). Forty-eight candidate genes were found to encode neuropeptides or peptide hormones. These include all known insect neuropeptides and neurohormones, with the exception of neuropeptide-like precursor 2 (NPLP2) and trissin. The gene coding for prothoracicotropic hormone (PTTH) was first identified from hemimetabolous insect. A total of 57 putative neuropeptide GPCR genes were identified and phylogenetic analysis showed most of them to be closely related to insect GPCRs. A notable finding was the occurrence of vertebrate hormone receptors, thyrotropin-releasing hormone receptor (TRHR)-like GPCR and parathyroid hormone receptor (PTHR)-like GPCRs. These results suggest that N. lugens possesses the most comprehensive neuropeptide system yet found in insects. Moreover, our findings demonstrate the power of RNA-seq as a tool for analyzing the neuropeptide-related genes in the absence of whole genome sequence information.


Asunto(s)
Hemípteros/genética , Proteínas de Insectos/genética , Neuropéptidos/genética , Receptores Acoplados a Proteínas G/genética , Animales , Hormonas de Insectos/genética , Neuropéptidos/clasificación , Filogenia , Receptores Acoplados a Proteínas G/clasificación
11.
Genome Biol ; 15(12): 521, 2014 Dec 03.
Artículo en Inglés | MEDLINE | ID: mdl-25609551

RESUMEN

BACKGROUND: The brown planthopper, Nilaparvata lugens, the most destructive pest of rice, is a typical monophagous herbivore that feeds exclusively on rice sap, which migrates over long distances. Outbreaks of it have re-occurred approximately every three years in Asia. It has also been used as a model system for ecological studies and for developing effective pest management. To better understand how a monophagous sap-sucking arthropod herbivore has adapted to its exclusive host selection and to provide insights to improve pest control, we analyzed the genomes of the brown planthopper and its two endosymbionts. RESULTS: We describe the 1.14 gigabase planthopper draft genome and the genomes of two microbial endosymbionts that permit the planthopper to forage exclusively on rice fields. Only 40.8% of the 27,571 identified Nilaparvata protein coding genes have detectable shared homology with the proteomes of the other 14 arthropods included in this study, reflecting large-scale gene losses including in evolutionarily conserved gene families and biochemical pathways. These unique genomic features are functionally associated with the animal's exclusive plant host selection. Genes missing from the insect in conserved biochemical pathways that are essential for its survival on the nutritionally imbalanced sap diet are present in the genomes of its microbial endosymbionts, which have evolved to complement the mutualistic nutritional needs of the host. CONCLUSIONS: Our study reveals a series of complex adaptations of the brown planthopper involving a variety of biological processes, that result in its highly destructive impact on the exclusive host rice. All these findings highlight potential directions for effective pest control of the planthopper.


Asunto(s)
Genoma de los Insectos , Hemípteros/genética , Hemípteros/microbiología , Herbivoria , Oryza/fisiología , Adaptación Biológica , Animales , Artrópodos/genética , Asia , Bacterias/genética , Evolución Molecular , Genómica , Hemípteros/fisiología , Especificidad del Huésped , Datos de Secuencia Molecular , Familia de Multigenes , Filogenia , Homología de Secuencia de Ácido Nucleico , Simbiosis
12.
J Med Entomol ; 50(5): 1105-10, 2013 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-24180116

RESUMEN

Although Culicoides biting midges act as a vector of important human and domestic animal diseases, their ecology is poorly understood. The lack of proper identification systems of Culicoides larvae is one of the main obstacles to progress in research. Based on mitochondrial sequences of 19 Japanese Culicoides species, we designed a universal primer set to amplify the partial sequence of the mitochondrial cytochrome c oxidase I (cox 1). The polymerase chain reaction product amplified from extracted DNA of Culicoides larvae using the primer set was directly sequenced, and species identification based on the variation at cox1 was conducted. Using the molecular identification system, we sorted 243 specimens of field-collected larvae from the southern part of Japan into 10 species including Culicoides arakawae (Arakawa), Culicoides oxystoma Kieffer, and Culicoides brevitarsis Kieffer, which are regarded as vectors of important livestock animal diseases. Eight species of Culicoides larvae, including C. arakawae and C. oxystoma, were recovered from active paddy fields and an abandoned paddy field. The result suggests that paddy fields contribute to breeding a variety of Culicoides species and maintenance and spread of Culicoides-borne pathogens. In contrast, larvae of C. brevitarsis were collected from cattle dung in pastures. The molecular identification system described herein using nucleotide sequences successfully achieved larval identification and will be useful for a better understanding of larval habitats of Culicoides biting midges.


Asunto(s)
Ceratopogonidae/clasificación , Ceratopogonidae/genética , Reacción en Cadena de la Polimerasa/métodos , Animales , Ceratopogonidae/crecimiento & desarrollo , Ceratopogonidae/metabolismo , Ecosistema , Complejo IV de Transporte de Electrones/genética , Complejo IV de Transporte de Electrones/metabolismo , Proteínas de Insectos/genética , Proteínas de Insectos/metabolismo , Japón , Larva/clasificación , Larva/genética , Larva/crecimiento & desarrollo , Larva/metabolismo , Datos de Secuencia Molecular , Análisis de Secuencia de ADN , Especificidad de la Especie
13.
J Hered ; 104(6): 821-9, 2013.
Artículo en Inglés | MEDLINE | ID: mdl-23975837

RESUMEN

Spiroplasma-mediated late male killing was found in the small brown planthopper, Laodelphax striatellus. Female-biased colonies (maternal lines, N = 4) were established from planthoppers collected in Taiwan and Japan. This sex ratio distortion was maternally inherited (sex ratio of total number of progenies [female:male]: 488:0 in F1, 198:7 in F2, 407:0 in F3; likelihood ratio test of all generations, P < 0.0001) and caused by male death during nymphal stages. The female-biased colonies were doubly infected with Spiroplasma and Wolbachia, and the non-biased colonies were infected solely with Wolbachia. Antibiotic treatment resulted in a normal sex ratio, strongly suggesting that bacteria are manipulating host reproduction. Spiroplasma-singly-infected planthopper colonies created by the antibiotic treatment produced progeny with strongly female-biased sex ratios (181:2; likelihood ratio test, χ(2) = 231.6, P < 0.0001). This is the first report of Spiroplasma-mediated male killing in hemimetabolous insects.


Asunto(s)
Hemípteros/microbiología , Spiroplasma , Animales , Femenino , Genes de Insecto , Hemípteros/clasificación , Hemípteros/efectos de los fármacos , Hemípteros/genética , Masculino , Datos de Secuencia Molecular , Filogenia , ARN Ribosómico 16S/genética , Razón de Masculinidad , Spiroplasma/efectos de los fármacos , Spiroplasma/fisiología , Simbiosis
14.
G3 (Bethesda) ; 3(9): 1481-92, 2013 Sep 04.
Artículo en Inglés | MEDLINE | ID: mdl-23821615

RESUMEN

The establishment of a complete genomic sequence of silkworm, the model species of Lepidoptera, laid a foundation for its functional genomics. A more complete annotation of the genome will benefit functional and comparative studies and accelerate extensive industrial applications for this insect. To realize these goals, we embarked upon a large-scale full-length cDNA collection from 21 full-length cDNA libraries derived from 14 tissues of the domesticated silkworm and performed full sequencing by primer walking for 11,104 full-length cDNAs. The large average intron size was 1904 bp, resulting from a high accumulation of transposons. Using gene models predicted by GLEAN and published mRNAs, we identified 16,823 gene loci on the silkworm genome assembly. Orthology analysis of 153 species, including 11 insects, revealed that among three Lepidoptera including Monarch and Heliconius butterflies, the 403 largest silkworm-specific genes were composed mainly of protective immunity, hormone-related, and characteristic structural proteins. Analysis of testis-/ovary-specific genes revealed distinctive features of sexual dimorphism, including depletion of ovary-specific genes on the Z chromosome in contrast to an enrichment of testis-specific genes. More than 40% of genes expressed in specific tissues mapped in tissue-specific chromosomal clusters. The newly obtained FL-cDNA sequences enabled us to annotate the genome of this lepidopteran model insect more accurately, enhancing genomic and functional studies of Lepidoptera and comparative analyses with other insect orders, and yielding new insights into the evolution and organization of lepidopteran-specific genes.


Asunto(s)
Bombyx/genética , ADN Complementario/genética , Genoma , Modelos Biológicos , Animales , Mapeo Cromosómico , Bases de Datos Genéticas , Exones , Etiquetas de Secuencia Expresada , Femenino , Biblioteca de Genes , Intrones , Masculino , Datos de Secuencia Molecular , Familia de Multigenes , Análisis de Secuencia de ADN , Transcriptoma
15.
BMC Genomics ; 14: 464, 2013 Jul 09.
Artículo en Inglés | MEDLINE | ID: mdl-23837716

RESUMEN

BACKGROUND: The diamondback moth (DBM), Plutella xylostella, is one of the most harmful insect pests for crucifer crops worldwide. DBM has rapidly evolved high resistance to most conventional insecticides such as pyrethroids, organophosphates, fipronil, spinosad, Bacillus thuringiensis, and diamides. Therefore, it is important to develop genomic and transcriptomic DBM resources for analysis of genes related to insecticide resistance, both to clarify the mechanism of resistance of DBM and to facilitate the development of insecticides with a novel mode of action for more effective and environmentally less harmful insecticide rotation. To contribute to this goal, we developed KONAGAbase, a genomic and transcriptomic database for DBM (KONAGA is the Japanese word for DBM). DESCRIPTION: KONAGAbase provides (1) transcriptomic sequences of 37,340 ESTs/mRNAs and 147,370 RNA-seq contigs which were clustered and assembled into 84,570 unigenes (30,695 contigs, 50,548 pseudo singletons, and 3,327 singletons); and (2) genomic sequences of 88,530 WGS contigs with 246,244 degenerate contigs and 106,455 singletons from which 6,310 de novo identified repeat sequences and 34,890 predicted gene-coding sequences were extracted. The unigenes and predicted gene-coding sequences were clustered and 32,800 representative sequences were extracted as a comprehensive putative gene set. These sequences were annotated with BLAST descriptions, Gene Ontology (GO) terms, and Pfam descriptions, respectively. KONAGAbase contains rich graphical user interface (GUI)-based web interfaces for easy and efficient searching, browsing, and downloading sequences and annotation data. Five useful search interfaces consisting of BLAST search, keyword search, BLAST result-based search, GO tree-based search, and genome browser are provided. KONAGAbase is publicly available from our website (http://dbm.dna.affrc.go.jp/px/) through standard web browsers. CONCLUSIONS: KONAGAbase provides DBM comprehensive transcriptomic and draft genomic sequences with useful annotation information with easy-to-use web interfaces, which helps researchers to efficiently search for target sequences such as insect resistance-related genes. KONAGAbase will be continuously updated and additional genomic/transcriptomic resources and analysis tools will be provided for further efficient analysis of the mechanism of insecticide resistance and the development of effective insecticides with a novel mode of action for DBM.


Asunto(s)
Bases de Datos Genéticas , Perfilación de la Expresión Génica , Genómica , Mariposas Nocturnas/genética , Animales , Gráficos por Computador , Internet , Datos de Secuencia Molecular , Especificidad de Órganos , Interfaz Usuario-Computador
16.
J Biochem ; 154(2): 149-58, 2013 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-23613025

RESUMEN

Many insect species harbour symbiotic microorganisms (symbionts) that are generally unculturable in media. To utilize symbionts as genome resources, we examined whether insect symbiont genes can be expressed in Escherichia coli. 144 plasmid clones were isolated from gene libraries, which were constructed from the genomic DNA of the intestinal bacterial symbiont in the brown-winged green bug, Plautia stali, using an E. coli system. Proteins prepared from a culture of each clone were analysed using SDS-PAGE. A discrete symbiont-specific band was detected in six clones. From the structural analyses of the insert in each clone, the candidate gene encoding the symbiont-specific protein was predicted and the amino acid sequence of the protein was deduced. The amino acid sequence in the N-terminal region of each protein was identical to that deduced from the genomic DNA sequence of the symbiont, but not of the host. The promoter sequences of the symbiont genes, very similar to those of the corresponding E. coli genes, were found in the insert DNA. These findings clearly indicate that genes derived from genomic DNA fragments of the P. stali symbiont can be expressed in E. coli.


Asunto(s)
Clonación Molecular , Escherichia coli/genética , Biblioteca Genómica , Heterópteros/microbiología , Simbiosis , Animales , Heterópteros/genética
17.
Bull Entomol Res ; 103(4): 382-92, 2013 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-23537548

RESUMEN

The brown planthoppers (BPH) Nilaparvata lugens (Stål) and the white-backed planthoppers (WBPH) Sogatella furcifera (Horváth) annually migrate from tropical and subtropical regions to temperate regions in Asia, including Japan, Korea and northern China. To elucidate the genetic divergence based on geography of planthoppers and to estimate their migration route on the basis of molecular data, we analysed a part of their mitochondrial genome sequences. Sequences of cytochrome oxidase subunit I (cox1) - transfer RNA for Leu (trnL2) - cox2 were determined for 579 BPH (1,928 bp) and 464 WBPH (1,927 bp) individuals collected from 31 and 25 locations, respectively, in East and Southeast Asia. Thirty and 20 mitochondrial haplotypes were detected for BPH and WBPH, respectively. Single populations of both planthoppers included multiple haplotypes, and many haplotypes were shared in some populations and areas. The most frequently detected haplotypes accounted for approximately 50% of all BPH and WBPH individuals. To evaluate gene flow among planthoppers in different regions in Asia, pairwise fixation index (Fst) values were calculated. For BPH, high Fst values (0.580-0.926) were shown between planthoppers in Papua New Guinea (PNG) and the other areas and moderate Fst values (0.176-0.362) were observed between those in southern Philippines and other areas. For WBPH, the Fst value was the highest between Taiwan and southern Vietnam (0.236), and low among the other areas. AMOVA indicated no genetic structure among eight areas, excluding southern Philippines and PNG, for BPH, and among ten areas for WBPH. These data indicate that both planthoppers do not show much differentiation of local populations and/or have genetically intermixed Asian populations. These data also indicate that it may be difficult to distinguish regional planthopper populations on the basis of differences in mitochondrial sequences.


Asunto(s)
Distribución Animal , ADN Mitocondrial/genética , Complejo IV de Transporte de Electrones/genética , Variación Genética , Hemípteros/genética , Análisis de Varianza , Migración Animal/fisiología , Animales , Asia Sudoriental , Secuencia de Bases , Análisis por Conglomerados , Cartilla de ADN/genética , Asia Oriental , Flujo Génico/genética , Haplotipos/genética , Datos de Secuencia Molecular , Análisis de Secuencia de ADN , Especificidad de la Especie
18.
FEBS J ; 280(8): 1782-94, 2013 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-23432933

RESUMEN

Bacillus thuringiensis is the most widely used biopesticide, and its Cry toxin genes are essential transgenes for the generation of insect-resistant transgenic crops. Recent reports have suggested that ATP-binding cassette transporter subfamily C2 (ABCC2) proteins are implicated in Cry intoxication, and that a single amino acid insertion results in high levels of resistance to Cry1 toxins. However, there is currently no available direct evidence of functional interactions between ABCC2 and Cry toxins. To address this important knowledge gap, we investigated the role of Bombyx mori ABCC2 (BmABCC2) or its mutant from a Cry1Ab-resistant B. mori strain on Cry1A toxin action. When we expressed BmABCC2 ectopically on Sf9 cells, it served as a functional receptor, and the single amino acid insertion found in BmABCC2 from Cry1Ab-resistant larvae resulted in lack of susceptibility to Cry1Ab and Cry1Ac. Using the same expression system, we found that Bo. mori cadherin-like receptor (BtR175) conferred susceptibility to Cry1A toxins, albeit to a lower degree than BmABCC2. Coexpression of BtR175 and BmABCC2 resulted in the highest cell susceptibility to Cry1A, Cry1F, and even the phylogenetically distant Cry8Ca toxin, when compared with expression of either receptor alone. The susceptibility observed in the coexpressing cells and that in Bo. mori larvae are likely to be correlated, suggesting that BtR175 and BmABCC2 are important factors determining larval susceptibility. Our study demonstrates, for the first time, Cry toxin receptor functionality for ABCC2, and highlights the crucial role of this protein and cadherin in the mechanism of action of Cry toxin.


Asunto(s)
Bombyx/efectos de los fármacos , Proteínas de Insectos/fisiología , Proteínas Asociadas a Resistencia a Múltiples Medicamentos/fisiología , Receptores de Superficie Celular/fisiología , Animales , Proteínas Bacterianas , Cadherinas/fisiología , Larva/efectos de los fármacos , Proteína 2 Asociada a Resistencia a Múltiples Medicamentos
19.
Front Physiol ; 3: 290, 2012.
Artículo en Inglés | MEDLINE | ID: mdl-22934042

RESUMEN

In insects, Malpighian tubules are functionally analogous to mammalian kidneys in that they not only are essential to excrete waste molecules into the lumen but also are responsible for the reabsorption of indispensable molecules, such as sugars, from the lumen to the principal cells. Among sugars, the disaccharide trehalose is highly important to insects because it is the main hemolymph sugar to serve as a source of energy and carbon. The trehalose transporter TRET1 participates in the transfer of newly synthesized trehalose from the fat body across the cellular membrane into the hemolymph. Although transport proteins must play a pivotal role in the reabsorption of trehalose in Malpighian tubules, the molecular context underlying this process remains obscure. Previously, we identified a Tret1 homolog (Nlst8) that is expressed principally in the Malpighian tubules of the brown planthopper (BPH). Here, we used the Xenopus oocyte expression system to show that NlST8 exerts trehalose transport activity that is elevated under low pH conditions. These functional assays indicate that Nlst8 encodes a proton-dependent trehalose transporter (H-TRET1). To examine the involvement of Nlst8 in trehalose reabsorption, we analyzed the sugar composition of honeydew by using BPH with RNAi gene silencing. Trehalose was detected in the honeydew as waste excreted from Nlst8-dsRNA-injected BPH under hyperglycemic conditions. However, trehalose was not expelled from GFP-dsRNA-injected BPH even under hyperglycemic conditions. We conclude that NlST8 could participate in trehalose reabsorption driven by a H(+) gradient from the lumen to the principal cells of the Malpighian tubules.

20.
Proc Natl Acad Sci U S A ; 109(25): E1591-8, 2012 Jun 19.
Artículo en Inglés | MEDLINE | ID: mdl-22635270

RESUMEN

Bt toxins derived from the arthropod bacterial pathogen Bacillus thuringiensis are widely used for insect control as insecticides or in transgenic crops. Bt resistance has been found in field populations of several lepidopteran pests and in laboratory strains selected with Bt toxin. Widespread planting of crops expressing Bt toxins has raised concerns about the potential increase of resistance mutations in targeted insects. By using Bombyx mori as a model, we identified a candidate gene for a recessive form of resistance to Cry1Ab toxin on chromosome 15 by positional cloning. BGIBMGA007792-93, which encodes an ATP-binding cassette transporter similar to human multidrug resistance protein 4 and orthologous to genes associated with recessive resistance to Cry1Ac in Heliothis virescens and two other lepidopteran species, was expressed in the midgut. Sequences of 10 susceptible and seven resistant silkworm strains revealed a common tyrosine insertion in an outer loop of the predicted transmembrane structure of resistant alleles. We confirmed the role of this ATP-binding cassette transporter gene in Bt resistance by converting a resistant silkworm strain into a susceptible one by using germline transformation. This study represents a direct demonstration of Bt resistance gene function in insects with the use of transgenesis.


Asunto(s)
Transportadoras de Casetes de Unión a ATP/genética , Sustitución de Aminoácidos , Proteínas Bacterianas/farmacología , Bombyx/genética , Endotoxinas/farmacología , Proteínas Hemolisinas/farmacología , Resistencia a los Insecticidas/genética , Mutación , Transportadoras de Casetes de Unión a ATP/química , Secuencia de Aminoácidos , Animales , Toxinas de Bacillus thuringiensis , Mapeo Cromosómico , Ligamiento Genético , Datos de Secuencia Molecular , Polimorfismo de Nucleótido Simple , Homología de Secuencia de Aminoácido
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