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1.
J Membr Biol ; 252(6): 563-575, 2019 12.
Artículo en Inglés | MEDLINE | ID: mdl-31256204

RESUMEN

The unique and ubiquitous bacterial lipoprotein biosynthesis pathway is an attractive new antibiotic target. Crystal structures of its three biosynthetic enzymes have been solved recently. The first enzyme, Phosphatidylglycerol:proLipoprotein diacylglyceryl Transferase (Lgt), which initiates the post-translational modification at the metabolic interface of protein biosynthesis, phospholipid biosynthesis, protein secretion and lipid modification was reported to be a seven-transmembrane helical structure with a catalytic periplasmic head. Its complete solubilization in water or mild detergent in a fully active state, its chromatographic behaviour as an active monomer in the absence of detergent and recovery of active whole-length protein after proteolytic treatment of spheroplasts cast serious doubts about its proposed membrane association and orientation. Rather, it could be a seven-helical bundle partially embedded in the inner membrane's inner leaflet aided by hydrophobic interaction. In fact, there are examples where originally reported seven-transmembrane proteins were later shown to be seven-helical peripheral membrane proteins based on solubilization criterion and re-analysis. Validated computational tool, Membrane Optimal Docking Area (MODA), also predicted a weaker association of Lgt's helices with the membrane compared to typical transmembrane proteins. This insight is crucial to Lgt-based antibiotic design.


Asunto(s)
Proteínas Bacterianas/metabolismo , Lipoproteínas/metabolismo , Proteínas de la Membrana/metabolismo , Transferasas/metabolismo , Escherichia coli/metabolismo , Interacciones Hidrofóbicas e Hidrofílicas , Señales de Clasificación de Proteína/fisiología
2.
Appl Microbiol Biotechnol ; 103(14): 5679-5688, 2019 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-31104097

RESUMEN

Serovars of Salmonella enterica are common food-borne bacterial pathogens. Salmonella typhi, which causes typhoid, is the most dangerous of them. Though detailed molecular pathogenesis studies reveal many virulence factors, inability to identify their biochemical functions hampers the development of diagnostic methods and therapeutic leads. Lack of quicker diagnosis is an impediment in starting early antibiotic treatment to reduce the severe morbidity and mortality in typhoid. In this study, employing bioinformatic prediction, biochemical analysis, and recombinantly cloning the active region, we show that extracellularly secreted virulence-associated protein, small intestinal invasion factor E (SiiE), possesses a sulfite oxidase (SO) domain that catalyzes the conversion of sodium sulfite to sodium sulfate using tungsten as the cofactor. This activity common to Salmonella enterica serovars seems to be specific to them from bioinformatic analysis of available bacterial genomes. Along with the ability of this large non-fimbrial adhesin of 600 kDa binding to sialic acid on the host cells, this activity could aid in subverting the host defense mechanism by destroying sulfites released by the immune cells and colonize the host gastrointestinal epithelium. Being an extracellular enzyme, it could be an ideal candidate for developing diagnostics of S. enterica, particularly S. typhi.


Asunto(s)
Adhesinas Bacterianas/metabolismo , Salmonella enterica/enzimología , Salmonella enterica/patogenicidad , Sulfito-Oxidasa/metabolismo , Factores de Virulencia/metabolismo , Adhesión Bacteriana , Biología Computacional , Salmonella enterica/genética , Salmonella typhimurium , Sulfatos/metabolismo , Sulfito-Oxidasa/genética , Sulfitos/metabolismo , Tungsteno/metabolismo , Virulencia
3.
Mar Biotechnol (NY) ; 20(3): 375-384, 2018 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-29656308

RESUMEN

In ELISA, a popular analytical diagnostic tool, the stable non-covalent immobilization (coating) of hydrophilic proteins/peptides on to hydrophobic polystyrene surface has remained a major common challenge. Recombinant bacterial lipid modification of proteins in Escherichia coli system has been shown in this study to solve this problem owing to the hydrophobic anchorage provided by three fatty acyl groups in N-acyl-S-diacylglyceryl Cys at the N-terminus. Exploiting this first post-translational protein engineering, the most abundantly expressed white spot syndrome viral protein ICP11 was lipid-modified and tested as a new target in a new ELISA method useful to shrimp farming. The lipid served as a potent adjuvant to enhance the titer (16 times) of higher affinity antibodies where amino terminal lipoamino acid N-acyl-S-diacylglyceryl cysteine of bacterial lipoproteins induce inflammatory responses through TLR and stimulate humoral immune responses without additional adjuvant and also aided in the immobilization of even a few nanograms of ICP11. Competition between the immobilized and the free antigen from the sample provided a sensitive measure of antigen in the infected shrimp tissues. The detection limit for ICP11 protein using competitive ELISA was 250 pg and the linear range of the assay was 15-240 ng.


Asunto(s)
Proteínas Bacterianas/metabolismo , Ensayo de Inmunoadsorción Enzimática/métodos , Virus del Síndrome de la Mancha Blanca 1/patogenicidad , Animales , Western Blotting , Metabolismo de los Lípidos/genética , Metabolismo de los Lípidos/fisiología , Penaeidae/microbiología , Penaeidae/virología , Ingeniería de Proteínas , Proteínas del Envoltorio Viral/metabolismo
4.
Biochem Biophys Res Commun ; 488(2): 413-417, 2017 06 24.
Artículo en Inglés | MEDLINE | ID: mdl-28506828

RESUMEN

Bacterial lipid modification of proteins is an essential post-translational event committed by Phosphatidylglycerol: prolipoprotein diacylglyceryl transferase (Lgt) by catalysing diacyglyceryl transfer from Phosphatidylglycerol to cysteine present in the characteristic 'lipobox' ([LVI] (-3) [ASTVI] (-2) [GAS] (-1) C (+1)) of prolipoprotein signal peptides. This is then followed by the cleavage of the signal peptide by lipoprotein-specific signal peptidase (LspA). It had been known for long that threonine at the -1 position allows diacylglyceryl modification by Lgt, but not signal peptide cleavage by LspA. We have addressed this unexplained stringency by computational analysis of the recently published 3D structure of LspA with its competitive inhibitor as well as transition state analogue, globomycin using PyMoL viewing tool and VADAR (Volume, Area, Dihedral Angle Reporter) web server. The propensity to form hydrogen bond (2.9a) between the hydroxyl group of threonine (not possible with serine) and the NH of the lipid-modified cysteine, possible only in the transition state, will prevent the protonation of NH of the leaving peptide and therefore its cleavage. This knowledge could be useful for designing inhibitors of this essential pathway in bacteria or for engineering LspA.


Asunto(s)
Antibacterianos/farmacología , Proteínas de la Membrana Bacteriana Externa/antagonistas & inhibidores , Bacterias Gramnegativas/efectos de los fármacos , Péptidos/farmacología , Antibacterianos/química , Proteínas de la Membrana Bacteriana Externa/química , Proteínas de la Membrana Bacteriana Externa/metabolismo , Bacterias Gramnegativas/metabolismo , Modelos Moleculares , Estructura Molecular , Péptidos/química , Señales de Clasificación de Proteína , Relación Estructura-Actividad
5.
Biosens Bioelectron ; 82: 71-7, 2016 Aug 15.
Artículo en Inglés | MEDLINE | ID: mdl-27040944

RESUMEN

Uropathogenic Escherichia coli (UPEC) is the major cause of 150 million Urinary Tract Infections (UTI) reported annually world-wide. High prevalence of multi-drug-resistance makes it dangerous and difficult to cure. Therefore simple, quick and early diagnostic tools are essential for effective treatment and control. We report an electrochemical immunosensor based on thionine dye (Th) immobilized on functionalized-multiwalled carbon nanotube+chitosan composite coated on glassy carbon electrode (GCE/f-MWCNT-Chit@Th) for quick and sensitive detection of UPEC in aqueous solution. This immunosensor was constructed by sequential immobilization of UPEC, bovine serum albumin, primary antibody and Horse Radish Peroxidase (HRP) tagged secondary antibody on the surface of GCE/f-MWCNT-Chit@Th. When analyzed using 2.5mM of hydrogen peroxide reduction reaction using cyclic voltammetry in phosphate buffer, pH 7.0, the immunosensor showed excellent linearity in a range of 10(2)-10(9)cfu of UPEC mL(-1) with a current sensitivity of 7.162µA {log(cfumL(-1))}(-1). The specificity of this immunosensor was tested using other UTI and non-UTI bacteria, Staphylococcus, Klebsiella, Proteus and Shigella. The clinical applicability of the immunosensor was also successfully tested directly in UPEC spiked urine samples (simulated sample).


Asunto(s)
Técnicas Biosensibles/instrumentación , Técnicas Electroquímicas/instrumentación , Escherichia coli Enteropatógena/aislamiento & purificación , Infecciones por Escherichia coli/orina , Inmunoensayo/instrumentación , Infecciones Urinarias/orina , Animales , Bovinos , Quitosano/química , Colorantes/química , Electrodos , Diseño de Equipo , Infecciones por Escherichia coli/diagnóstico , Infecciones por Escherichia coli/microbiología , Humanos , Nanotubos de Carbono/química , Fenotiazinas/química , Infecciones Urinarias/diagnóstico , Infecciones Urinarias/microbiología
6.
Nat Commun ; 7: 10198, 2016 Jan 05.
Artículo en Inglés | MEDLINE | ID: mdl-26729647

RESUMEN

Lipoprotein biogenesis is essential for bacterial survival. Phosphatidylglycerol:prolipoprotein diacylglyceryl transferase (Lgt) is an integral membrane enzyme that catalyses the first reaction of the three-step post-translational lipid modification. Deletion of the lgt gene is lethal to most Gram-negative bacteria. Here we present the crystal structures of Escherichia coli Lgt in complex with phosphatidylglycerol and the inhibitor palmitic acid at 1.9 and 1.6 Å resolution, respectively. The structures reveal the presence of two binding sites and support the previously reported structure-function relationships of Lgt. Complementation results of lgt-knockout cells with different mutant Lgt variants revealed critical residues, including Arg143 and Arg239, that are essential for diacylglyceryl transfer. Using a GFP-based in vitro assay, we correlated the activities of Lgt with structural observations. Together, the structural and biochemical data support a mechanism whereby substrate and product, lipid-modified lipobox-containing peptide, enter and leave the enzyme laterally relative to the lipid bilayer.


Asunto(s)
Escherichia coli/enzimología , Regulación Bacteriana de la Expresión Génica/fisiología , Regulación Enzimológica de la Expresión Génica/fisiología , Lipoproteínas/metabolismo , Transferasas/química , Transferasas/metabolismo , Dominio Catalítico , Cristalización , Escherichia coli/genética , Escherichia coli/metabolismo , Eliminación de Gen , Lipoproteínas/genética , Modelos Moleculares , Unión Proteica , Conformación Proteica , Especificidad por Sustrato , Transferasas/genética
7.
Appl Microbiol Biotechnol ; 99(10): 4423-33, 2015 May.
Artículo en Inglés | MEDLINE | ID: mdl-25900191

RESUMEN

Spread of drug-resistant Staphylococcus spp. into communities pose danger demanding effective non-invasive and non-destructive tools for its early detection and surveillance. Characteristic volatile organic compounds (VOCs) produced by bacteria offer new diagnostic targets and novel approaches not exploited so far in infectious disease diagnostics. Our search for such characteristic VOC for Staphylococcus spp. led to the depiction of 2-[3-acetoxy-4,4,14-trimethylandrost-8-en-17-yl] propanoic acid (ATMAP), a moderately volatile compound detected both in the culture and headspace when the organism was grown in tryptone soya broth (TSB) medium. A simple and inexpensive colorimetric method (colour change from yellow to orange) using methyl red as the pH indicator provided an absolutely specific way for identifying Staphylococcus spp., The assay performed in liquid cultures (7-h growth in TSB) as well as in the headspace of plate cultures (grown for 10 h on TSA) was optimised in a 96-well plate and 12-well plate formats, respectively, employing a set of positive and negative strains. Only Staphylococcus spp. showed the distinct colour change from yellow to orange due to the production of the above VOC while in the case of other organisms, the reagent remained yellow. The method validated using known clinical and environmental strains (56 including Staphylococcus, Proteus, Pseudomonas, Klebsiella, Bacillus, Shigella and Escherichia coli) was found to be highly efficient showing 100% specificity and sensitivity. Such simple methods of bacterial pathogen identification are expected to form the next generation tools for the control of infectious diseases through early detection and surveillance of causative agents.


Asunto(s)
Colorimetría/métodos , Medios de Cultivo/metabolismo , Propionatos/metabolismo , Staphylococcus/metabolismo , Compuestos Orgánicos Volátiles/metabolismo , Medios de Cultivo/química , Propionatos/química , Staphylococcus/crecimiento & desarrollo , Compuestos Orgánicos Volátiles/química
8.
Appl Microbiol Biotechnol ; 99(5): 2339-49, 2015 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-25634020

RESUMEN

The presence of microorganisms in biological fluids like urine and blood is an indication of vulnerability to infections. Iron is one of the important micronutrients required for bacterial growth. In an iron-deficit environment, bacteria release high-affinity iron-chelating compounds called siderophores which can be used as non-invasive target molecules for the detection of such pathogens. However, only limited reagents and procedures are available to detect the presence of these organic molecules. The present study aims at detecting the presence of siderophores in the iron-depleted media, exploiting the reversible quenching of Calcein Blue and iron(III) complex. The fluorescence of Calcein Blue is known to be quenched in the presence of iron(III); if a stronger chelator removes this ion from the fluorophore, the fluorescence of the fluorophore is regained. This behaviour of the fluorophore was exploited to detect and quantify siderophores down to 50 and 800 nM equivalent of standard siderophore, deferroxamine mesylate (desferal) in Dulbecco's PBS and siderophore quantification (SPQ) medium, respectively. The siderophores released by pathogens, equivalent to standard desferal, were in the range of 1.29 to 5.00 µM and those for non-pathogens were below 1.19 µM. The simple, sensitive and cost-effective method performed in a 96-well plate was able to detect and quantify iron chelators within 7-8 h of incubation.


Asunto(s)
Bacterias/aislamiento & purificación , Fluoresceínas/metabolismo , Fluorometría/métodos , Sideróforos/análisis , Bacterias/metabolismo , Técnicas Bacteriológicas/economía , Técnicas Bacteriológicas/métodos , Costos y Análisis de Costo , Fluorometría/economía , Sensibilidad y Especificidad
9.
J Med Microbiol ; 63(Pt 12): 1595-1607, 2014 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-25231626

RESUMEN

Enteropathogenic Escherichia coli (EPEC) are a major cause of infant diarrhoea in developing countries and a significant public health issue in industrialized countries. Currently there are no simple tests available for the diagnosis of EPEC. Serology of O-antigens is widely used routinely in many laboratories throughout the world, even though it has been known for many years to be an unreliable indicator of EPEC virulence. We have developed a simple, low-cost immunodiagnostic test based on the EspA filament, an essential virulence factor of EPEC and the related enterohaemorrhagic E. coli (EHEC). Using recombinant proteins of the five major variants of EspA as immunogens, we raised a panel of three monoclonal antibodies in mice that detects all variants of the native target in bacterial cultures. The antibodies proved suitable for application in sandwich-type assays, including ELISA and lateral flow immunoassays (LFI). Prototypes for both assays were specific for EPEC and EHEC strains when tested against a panel of control micro-organisms. We have also developed a simple, affordable culture medium, A/E medium, which optimizes expression of EspA allowing improved sensitivity of detection compared with standard Dulbecco's modified Eagle's medium. Together these reagents form the basis of robust, informative tests for EPEC for use especially in developing countries but also for routine screening in any clinical laboratory.


Asunto(s)
Anticuerpos Monoclonales , Pruebas Diagnósticas de Rutina/métodos , Escherichia coli Enterohemorrágica/aislamiento & purificación , Escherichia coli Enteropatógena/aislamiento & purificación , Infecciones por Escherichia coli/diagnóstico , Proteínas de Escherichia coli/análisis , Gastroenteritis/diagnóstico , Animales , Anticuerpos Monoclonales/aislamiento & purificación , Escherichia coli Enterohemorrágica/inmunología , Escherichia coli Enteropatógena/inmunología , Infecciones por Escherichia coli/microbiología , Proteínas de Escherichia coli/inmunología , Gastroenteritis/microbiología , Humanos , Pruebas Inmunológicas/métodos , Ratones Endogámicos BALB C , Factores de Virulencia/análisis , Factores de Virulencia/inmunología
10.
Mol Membr Biol ; 31(6): 183-94, 2014 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-25156679

RESUMEN

Sec- and Tat-mediated bacterial lipid modification of proteins are important posttranslational processes owing to their vital roles in cellular functions, membrane targeting and biotechnological applications like ELISA, biosensor, adjuvant-free vaccines, liposomal drug delivery etc. However a better understanding of the tight coupling of secretory and lipid modification machineries and the processes associated will help unravel this essential biological event and utilize it for engineering applications. Further, there is a need for a systematic and convincing investigation into membrane targeting, solubilization and ease-of-purification of engineered lipoproteins to facilitate scientists in readily applying this new protein engineering tool. Therefore, in this study, we have investigated systematically recombinant expression, translocation, solubilization and purification of three White Spot Syndrome Viral (WSSV) proteins, ICP11, VP28 and VP281. Our study shows that the lipid modification and secretion processes are tightly coupled to the extent that mismatch between folding kinetics and signal sequence of target proteins could lead to transcriptional-translational uncoupling or aborted translation. The proteins expressed as lipoproteins through Tat-pathway were targeted to the inner membrane achieving considerable enrichment. These His-tagged proteins were then purified to apparent homogeneity in detergent-free form using single-step Immobilized Metal Affinity Chromatography. This study has interesting findings in lipoprotein biogenesis enhancing the scope of this unique post-translational protein engineering tool for obtaining pure detergent-free, membrane or hydrophobic surface-associating diagnostic targets and vaccine candidates for WSSV.


Asunto(s)
Escherichia coli/genética , Lipoproteínas/biosíntesis , Ácido Palmítico/metabolismo , Penaeidae/virología , Ingeniería de Proteínas , Proteínas Virales/biosíntesis , Virus del Síndrome de la Mancha Blanca 1/genética , Animales , Escherichia coli/metabolismo , Productos del Gen tat , Lipoproteínas/genética , Mutagénesis Sitio-Dirigida , Procesamiento Proteico-Postraduccional , Señales de Clasificación de Proteína , Proteínas Recombinantes/biosíntesis , Proteínas Recombinantes/genética , Transfección , Proteínas Virales/genética , Virus del Síndrome de la Mancha Blanca 1/metabolismo
11.
Appl Microbiol Biotechnol ; 98(1): 445-54, 2014 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-24281757

RESUMEN

Pathogen detection needs a paradigm shift from time-consuming conventional microbiological and biochemical tests to much simpler identification methods with higher sensitivity and specificity. In this regard, a simple detection method for frequently isolated nosocomial uropathogen, Proteus spp., was developed using the characteristic volatile 2-methylbutanal released in Luria Bertani broth. The instant reaction of the compound with 5-dimethylaminonaphthalene-1-sulfonylhydrazine (DNSH) has been adapted to develop a sensitive fluorescence assay named "ProteAl" (Prote, "Proteus" & Al, "Aldehyde"). The assay was performed by direct addition of the fluorescence reagent to the culture after 7 h of growth. The distinct green fluorescence by Proteus (other organisms show orange fluorescence) served as the simplest and quicker identification test available for Proteus. In the laboratory, it exhibited 100% specificity and 100% sensitivity during testing of 95 strains including standard and known clinical isolates representing frequently encountered uropathogens.


Asunto(s)
Aldehídos/análisis , Técnicas Bacteriológicas/métodos , Biomarcadores/análisis , Proteus/aislamiento & purificación , Proteus/metabolismo , Compuestos de Dansilo/metabolismo , Monitoreo Epidemiológico , Fluorescencia , Hidrazinas/metabolismo , Sensibilidad y Especificidad , Coloración y Etiquetado/métodos
12.
Vaccine ; 31(48): 5672-9, 2013 Nov 19.
Artículo en Inglés | MEDLINE | ID: mdl-24120486

RESUMEN

The Salmonid alphavirus (SAV) is the etiological agent of pancreas disease in Atlantic salmon (Salmo salar) and Sleeping disease in rainbow trout (Oncorhynchus mykiss). SAV differs from alphaviruses infecting terrestrial animals in that it infects salmonid fish at low temperatures and does not use an arthropod vector for transmission. In this study we have shown that a SAVbased replicon could express proteins when driven by the subgenomic promoter in vitro in cells from fish, mammals and insects, as well as in vivo in shrimps (Litopanaeus vannamei). The SAV-replicon was found to be functional at temperatures ranging from 4 to 37°C. Protein expression was slow and moderate compared to that reported from terrestrial alphavirus replicons or from vectors where protein expression was under control of the immediate early CMV-promoter. No cytopathic effect was visually observable in cells transfected with SAV-replicon vectors. Double stranded RNA was present for several days after transfection of the SAV-replicon in fish cell lines and its presence was indicated also in shrimp. The combination of prolonged dsRNA production, low toxicity, and wide temperature range for expression, may potentially be advantageous for the use of the SAV replicon to induce immune responses in aquaculture of fish and shrimp.


Asunto(s)
Alphavirus/genética , Expresión Génica , Biosíntesis de Proteínas , ARN Bicatenario/genética , ARN Bicatenario/metabolismo , Replicón , Animales , Línea Celular , Peces , Insectos , Mamíferos , Penaeidae , Temperatura
13.
Protein Expr Purif ; 87(2): 120-8, 2013 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-23165241

RESUMEN

The unique bacterial enzyme phosphatidylglycerol: prolipoprotein diacylglyceryl transferase (Lgt) is the least studied enzyme of the ubiquitous bacterial lipoprotein synthetic pathway, mostly due to the low abundance of the enzyme. So far, Lgt has been studied to a limited extent in gram-negative bacteria, mainly in Escherichia coli. We, for the first time, report the isolation of an adequate amount of Lgt from the gram-positive lactic acid bacteria, Lactococcus lactis and compare this wild-type bacterial enzyme with the E. coli enzyme. The L. lactis Lgt, when purified by cationic-exchange chromatography, showed a 20-fold increase in the specific activity compared to that of the load, and 75% of the total Lgt activity loaded was recovered. Kinetically, L. lactis Lgt was found to be similar to the E. coli enzyme with matching K(m) and V(max), whereas the specific activity of the L. lactis enzyme was about 20 times less than that of the E. coli enzyme. Comparative bioinformatic analysis of L. lactis, E. coli and Staphylococcus aureus Lgt revealed that the conserved and catalytically important His-103 residue in E. coli Lgt, was altered to Tyr in L. lactis. Investigations showed that other bacteria where this alteration is visible, form a diversion within the gram-positive bacteria in evolution. Further analysis revealed Mycobacterium smegmatis to be the species which evolved with the alteration of His to Tyr.


Asunto(s)
Proteínas Bacterianas/biosíntesis , Proteínas Bacterianas/aislamiento & purificación , Lactococcus lactis/enzimología , Transferasas/biosíntesis , Transferasas/aislamiento & purificación , Secuencia de Aminoácidos , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Cromatografía por Intercambio Iónico , Biología Computacional , Escherichia coli/enzimología , Escherichia coli/genética , Escherichia coli/metabolismo , Glucósidos/química , Glucósidos/metabolismo , Cinética , Lactococcus lactis/genética , Lactococcus lactis/metabolismo , Datos de Secuencia Molecular , Filogenia , Alineación de Secuencia , Transferasas/química , Transferasas/genética
14.
Microb Drug Resist ; 18(6): 586-96, 2012 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-22928862

RESUMEN

The objective of this study is to develop an antibiogram (AB) method superior to a disc diffusion method (DDM) with respect to rapidity, reliability, and accuracy especially in view of an increasing threat from multidrug resistance (MDR) of infectious bacteria. A high-throughput liquid-phase fluorescent antibiogram method capable of providing results within 6-8 hours has been developed. The AB method has been optimally designed for ease of operation, growth, and dye stability. This new method was more reliable than DDM in differentiating AB sensitivity as susceptible, intermediate, and resistant within 6-8 hours and providing evidence for efflux mechanism in the MDR phenotype. The superiority of this method even over the standard liquid turbidity method was evidenced by more accurate determination of intermediary resistance in a set of 23 clinical Escherichia coli strains against five common antibiotics. In view of the demand for the right choice of an antibiotic in short time, the newly developed AB method is clinically applicable and useful in the rational use of antibiotic and minimizing of MDR emergence.


Asunto(s)
Antibacterianos/farmacología , Escherichia coli/efectos de los fármacos , Ensayos Analíticos de Alto Rendimiento , Pruebas de Sensibilidad Microbiana/métodos , Viabilidad Microbiana/efectos de los fármacos , Farmacorresistencia Bacteriana Múltiple/efectos de los fármacos , Escherichia coli/crecimiento & desarrollo , Escherichia coli/aislamiento & purificación , Infecciones por Escherichia coli/tratamiento farmacológico , Infecciones por Escherichia coli/microbiología , Fluorescencia , Humanos , Reproducibilidad de los Resultados , Factores de Tiempo
15.
Biotechniques ; 52(3): 167-72, 2012 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-22401549

RESUMEN

Efforts to delineate the basis for variations in protein profiles of different membrane fractions from various bacterial pathogens led to the finding that even the same medium [e.g., Luria Bertani (LB) broth] purchased from different commercial sources generates remarkably dissimilar protein profiles despite similar growth characteristics. Given the pervasive roles small RNAs play in regulating gene expression, we inquired if these source-specific differences due to media arise from disparities in the presence of small RNAs. Indeed, LB media components from two different commercial suppliers contained varying, yet significant, amounts of 10-80 bp small RNAs. Removal of small RNA from LB using RNaseA during media preparation resulted in significant changes in bacterial protein expression profiles. Our studies underscore the fact that seemingly identical growth media can lead to dramatic alterations in protein expression patterns, highlighting the importance of utilizing media free of small RNA during bacteriological studies. Finally, these results raise the intriguing possibility that similar pools of small RNAs in the environment can influence bacterial adaptation.


Asunto(s)
Proteínas Bacterianas/análisis , Medios de Cultivo/farmacología , Enterobacteriaceae/efectos de los fármacos , Proteoma/efectos de los fármacos , ARN/farmacología , Proteínas Bacterianas/metabolismo , Medios de Cultivo/química , Electroforesis en Gel de Poliacrilamida , Enterobacteriaceae/metabolismo , Proteoma/análisis , Proteoma/metabolismo , ARN/química
16.
Anal Biochem ; 423(1): 163-70, 2012 Apr 01.
Artículo en Inglés | MEDLINE | ID: mdl-22342619

RESUMEN

The unique and physiologically vital bacterial enzyme, prolipoprotein diacylglyceryl transferase (Lgt), which catalyzes the committed first step in the posttranslational transfer of diacylglyceryl group from phosphatidylglycerol to the prospective N-terminal cysteine of prolipoproteins, remains to be characterized for want of a simpler but equally sensitive nonradioactive assay. We, for the first time, report a coupled enzymatic fluorescence assay for Lgt using the de novo synthetic peptide substrate MKATKSAVGSTLAGCSSHHHHHH. The assay is based on the conversion of the by-product, glycerol-1-phosphate, to dihydroxyacetone using an alkaline phosphatase-glycerol dehydrogenase combination and estimating the fluorescence of the coupled reduction of resazurin to resorufin. The minimum amount of glycerol-1-phosphate, and hence the modified peptide, detected by this method is approximately 20pmol, thereby making this assay a promising alternative to the radioactive assays. The assay is rapid, more convenient, less laborious, and suitable for purification and characterization of Lgt.


Asunto(s)
Pruebas de Enzimas/métodos , Colorantes Fluorescentes/química , Lipoproteínas/biosíntesis , Espectrometría de Fluorescencia , Transferasas/metabolismo , Secuencia de Aminoácidos , Bacterias/enzimología , Electroforesis en Gel de Poliacrilamida , Cinética , Datos de Secuencia Molecular , Oxazinas/química , Péptidos/metabolismo , Especificidad por Sustrato , Xantenos/química
17.
Mol Biosyst ; 6(6): 999-1007, 2010 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-20485744

RESUMEN

Bacterial lipoproteins, an important class of membrane proteins, are generally thought to be translocated in an unfolded state by the well-studied Sec machinery, whereas the role of TAT, meant for folded proteins, is hardly investigated. Using appropriately engineered fast-folding Enhanced Green Fluorescence Protein (EGFP), as a model, here we show that TAT is essential for not only translocating fast-folding lipoprotein but also its lipid modification. EGFP was lipid-modified and targeted to the outer membrane's outer surface with a prototypical TAT signal sequence containing lipobox but not with the lipoprotein or TAT signal sequence. Justifiably signal sequences of many substrate-binding and co-factor-containing lipoproteins contained both TAT-box and lipobox (Shruthi et al., submitted). Cytoplasmic accumulation of unmodified precursors of engineered EGFP in a tatC mutant implicated this TAT-box-recognizing component in lipid-modification. Similar observations reported earlier with Sec components and murein lipoprotein led us to propose that the translocation-competent and translocase-associated (Sec or TAT) precursor form is prerequisite to initiation of lipid-modification in vivo. The above missing links between translocation and lipid modification machineries in vivo is important to our understanding of bacterial lipoprotein biosynthesis and its utility as a protein engineering tool for potent applications in synthetic biology and nanobiotechnology like display, arrays on bacterial surfaces, vaccines and biosensors.


Asunto(s)
Arginina/metabolismo , Proteínas de Escherichia coli/metabolismo , Escherichia coli/metabolismo , Proteínas Fluorescentes Verdes/metabolismo , Proteínas de Transporte de Membrana/metabolismo , Adenosina Trifosfatasas/genética , Adenosina Trifosfatasas/metabolismo , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Membrana Celular/metabolismo , Escherichia coli/genética , Proteínas de Escherichia coli/genética , Técnica del Anticuerpo Fluorescente Indirecta , Proteínas Fluorescentes Verdes/química , Proteínas Fluorescentes Verdes/genética , Immunoblotting , Lipoproteínas/genética , Lipoproteínas/metabolismo , Proteínas de Transporte de Membrana/genética , Pliegue de Proteína , Señales de Clasificación de Proteína/genética , Transporte de Proteínas , Canales de Translocación SEC , Proteína SecA , Transducción de Señal
18.
J Mol Evol ; 70(4): 359-70, 2010 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-20333370

RESUMEN

Bacterial lipoproteins, characterized by the N-terminal N-acyl S-diacylglyceryl Cysteine, are key membrane proteins in bacterial homeostasis. It is generally thought that during the modification lipoprotein precursors are translocated via the Sec-machinery in an unfolded state. The recent discovery of twin-arginine translocation (TAT) machinery, meant for exporting folded-proteins, and the presence of TAT-type signal sequences in co-factor-containing (hence already folded) lipoproteins, prompted us to investigate its role and significance in lipoprotein biosynthesis. We systematically analyzed 696 prokaryotic genomes using an algorithm based on DOLOP and TatP rules to predict TAT-pathway-dependent lipoprotein substrates. Occurrence of the deduced TAT-pathway-dependent lipoprotein substrates in relation to genome size, presence or absence of TAT machinery, and extent of its usage for lipoprotein export and habitat types revealed that unlike the host-obligates, the free-living prokaryotes in complex hostile environments (e.g., soil) depend more on TAT-exported lipoproteins. Functional classification of the predicted TAT-dependent lipoproteins revealed enrichment in hydrolases and oxido-reductases, which are fast-folding and co-factor-containing proteins. The role of the TAT pathway in the export of folded-lipoproteins and in niche-specific adaptation for survival has important implications not only in lipoprotein biosynthesis, but also for protein and metabolic engineering applications.


Asunto(s)
Algoritmos , Lipoproteínas/fisiología , Señales de Clasificación de Proteína , Proteínas Arqueales/genética , Proteínas Arqueales/metabolismo , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Biología Computacional/métodos , Enzimas/genética , Evolución Molecular , Genoma Arqueal , Genoma Bacteriano , Lipoproteínas/genética , Lipoproteínas/metabolismo , Proteínas de Transporte de Membrana , Filogenia
19.
J Antibiot (Tokyo) ; 62(7): 377-84, 2009 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-19636312

RESUMEN

Multiple drug resistance (MDR) in bacteria causes higher mortality and morbidity, complicates treatment and increases health-care outlay. With no new-generation antibiotics in sight, its rapid spread through the environment poses grave danger. Therefore, rapid detection to identify effective antibiotics and to prevent their indiscriminate use is imperative. However, the widely used clinical method for antibiogram, the Kirby-Bauer disc-diffusion method (DDM), requires 2-3 days, has inherent shortcomings of solid-phase assays and is not suitable for high-throughput operations. In our research on MDR associated with childhood diarrhea, we determined the antibiogram of 73 clinical diarrheagenic Escherichia coli strains using both the DDM and the more reliable liquid turbidity method (LTM) performed in 96-microwell plates. The results were further correlated with a dye-exclusion efflux assay using fluorescein diacetate. Although LTM is apparently superior in saving critical time, suitability to high-throughput operations and reliability, we found that the serious shortcomings of DDM could be effectively countered by just doubling the dosage of antibiotics currently used in discs or by using two discs in place of one. With 48 of the 49 MDR strains being positive for efflux and the 12 strains 'susceptible' to all the antibiotics being negative, the efflux assay could be useful as an integral component of the antibiogram test or for additional confirmation. The presence of 65% of MDR strains among diarrheagenic E. coli is a matter of serious concern, although most of them could be treated with either Gentamycin or Amikacin, as is the practice by experience.


Asunto(s)
Antibacterianos/farmacología , Diarrea/microbiología , Infecciones por Escherichia coli/microbiología , Escherichia coli/efectos de los fármacos , Escherichia coli/aislamiento & purificación , Pruebas de Sensibilidad Microbiana/métodos , Antibacterianos/metabolismo , Niño , Medios de Cultivo , Difusión , Relación Dosis-Respuesta a Droga , Farmacorresistencia Bacteriana Múltiple , Escherichia coli/metabolismo , Humanos , Nefelometría y Turbidimetría
20.
Diagn Microbiol Infect Dis ; 63(3): 243-50, 2009 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-19216937

RESUMEN

For lack of simple inexpensive early detection methods for Shigella spp. and enteroinvasive Escherichia coli (EIEC), bacillary dysentery remains a major cause of childhood mortality and morbidity in India and other developing countries. Rapid stool testing for apyrase, a specific periplasmic enzyme essential for the pathogen's intracellular spread, may provide a solution. We have developed a whole-cell colorimetric pyrophosphate hydrolysis assay based on cheap, stable, and locally available reagents. An innovative filtration-cum-inoculation step eliminates interfering stool solids and ensures sufficient bacterial growth and apyrase expression in 6 to 7 h at 37 degrees C. In a limited double-blind study of 57 clinical isolates of common enterobacteria, the test showed 100% sensitivity and 80% specificity for Shigella spp. and EIEC. Requiring only widely available equipment and inexpensive consumables, this affordable test is readily adaptable for determining antibiograms and for surveillance of food and water samples for the presence of Shigella and EIEC.


Asunto(s)
Apirasa/análisis , Proteínas Bacterianas/análisis , Técnicas Bacteriológicas/métodos , Colorimetría/métodos , Disentería Bacilar/diagnóstico , Infecciones por Escherichia coli/diagnóstico , Heces/microbiología , Difosfatos/metabolismo , Disentería Bacilar/microbiología , Escherichia coli/enzimología , Escherichia coli/aislamiento & purificación , Infecciones por Escherichia coli/microbiología , Microbiología de Alimentos , India , Pruebas de Sensibilidad Microbiana , Sensibilidad y Especificidad , Shigella/enzimología , Shigella/aislamiento & purificación
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