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1.
Small ; : e2405467, 2024 Sep 05.
Artículo en Inglés | MEDLINE | ID: mdl-39235419

RESUMEN

Excessive electricity usage in buildings, notably for heating and cooling, accounts for over 30% of energy consumption, creating a pressing need for energy-saving solutions. Electrochromic Smart Windows (ECSW) aims to reduce energy use while maintaining comfort but faces high costs due to materials like tin-doped indium oxide (ITO) and thick electrochromic films. Moreover, achieving full opacity in the colored state of ECSW is a bottleneck for the industry to overcome privacy concerns. Herein, efforts are directed toward finding cost-efficient alternatives, with all-tungsten-based mesh networks showing promise due to enhanced stability. This newly developed ITO-free, all-tungsten ECSW displays minimal transmittance (≈3%) in the colored state using only 260 nm thick sub-stoichiometric tungsten oxide (WO3-x) film within a lithium-ion-based electrolyte. The ECSW device of size (25 cm2) also demonstrates areal capacitance of ≈13 mF cm-2 to power a liquid crystal display (LCD) for ≈25 min, showcasing its energy storage capabilities. Additionally, to confirm scalability and cost-effectiveness, a larger 15 × 15 cm2 ECSW utilized a single hybrid electrode, highlighting the potential for reducing costs when scaling up production processes. This advancement represents a significant stride toward accessible and energy-efficient smart window technology, offering broader applicability within modern architectural practices.

2.
Carbohydr Polym ; 346: 122618, 2024 Dec 15.
Artículo en Inglés | MEDLINE | ID: mdl-39245527

RESUMEN

Starch is one of the natural encapsulant materials widely used in food, pharmaceutical and cosmetic industries. Starch with high amylose content (above 40 %, w/w) is prone to form single helices V-type allomorph with a hydrophilic outer surface and a hydrophobic inner cavity making them suitable for encapsulation of hydrophobic compounds such as essential oils, fatty acids, and vitamins. Pea starch obtained from pea protein processing industries have a high amylose content (40 %, w/w) rendering them unsuitable for direct food applications as ingredients. Therefore, in this study, an in-house spraying procedure was used to synthesize nanoparticles using pea starch, to encapsulate neem oil, a natural antimicrobial compound obtained from neem plant (Azadirachta indica) seed. The synthesis of the oil-encapsulated starch nanoparticles (OESNP) was optimized using a Box-Behnken experimental design to study the influence of the processing parameters such as the initial starch concentration, homogenization speed, duration of homogenization, sample injection rate, and quantity of antisolvent (ethanol). The optimized sample showed an 80-90 % encapsulation efficiency and particle size of <500 nm. The spherical OESNPs also demonstrated sustained release of the oil compared to free oil when dispersed in water. X-ray diffraction analysis revealed the coexistence of C-type and V-type polymorphs in the loaded and unloaded nanoparticles. It is concluded that the synthesized OESNPs with controlled release hold the potential to utilize industrial pea starch waste for the delivery of natural pesticides in agriculture.


Asunto(s)
Glicéridos , Nanopartículas , Pisum sativum , Almidón , Pisum sativum/química , Nanopartículas/química , Almidón/química , Glicéridos/química , Tamaño de la Partícula , Terpenos/química , Aceites de Plantas/química , Agricultura/métodos , Azadirachta/química , Amilosa/química
3.
Front Plant Sci ; 15: 1420197, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-39211839

RESUMEN

Indian mustard (Brassica juncea) is an important oilseed crop in India. Alternaria leaf spot (Alternaria blight) is incited by the fungus Alternaria brassicicola. It majorly affects crop production leading to a yield loss of up to 70%. To circumvent this problem, the study of the resistance mechanism and identification of biochemical markers is one of the important strategies for its management. In the present study, a total of 219 genotypes of Indian mustard with check were screened for Alternaria blight over two seasons. Based on the area under the disease progress curve (AUDPC) scores, ten consistently performing genotypes were selected for the screening of biochemical and yield attributes under artificial inoculated conditions of Alternaria brassicicola (Berk) Sacc. The result showed a negative correlation between disease and yield attributes. The catalase (CAT) activity was significantly increased in resistant genotypes compared to susceptible ones, indicating the crucial role of CAT in the resistance mechanism. Pathogen infection also increases the total protein content and the Alternaria-resistant genotype showed the highest total soluble protein while the susceptible genotype showed the lowest total soluble protein. The ten genotypes were categorized by SSI (stress susceptibility index) and Varuna was identified as a tolerant genotype and Giriraj as a susceptible genotype for Alternaria brassicicola (Berk) Sacc. Varuna and Giriraj were chosen for quantitative analysis of methionine and tryptophan amino acids from seeds using RP-HPLC (Reverse Phase-High Performance Liquid Chromatography) and there were significant differences in the levels of methionine and tryptophan between the Varuna and Giriraj genotypes. Varuna showed higher methionine and tryptophan content compared to the Giriraj genotype. Higher protein content demonstrated an increase in biotic stress-responsive amino acids, such as methionine and tryptophan, suggesting increased resistance to Alternaria diseases in these high-protein genotypes. These amino acids could be used as biochemical markers for Alternaria resistance of mustard.

4.
Plant Physiol Biochem ; 215: 108989, 2024 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-39094478

RESUMEN

The world population is steadily growing, exerting increasing pressure to feed in the future, which would need additional production of major crops. Challenges associated with changing and unpredicted climate (such as heat waves) are causing global food security threats. Cereal crops are a staple food for a large portion of the world's population. They are mostly affected by these environmentally generated abiotic stresses. Therefore, it is imperative to develop climate-resilient cultivars to support the sustainable production of main cereal crops (Rice, wheat, and maize). Among these stresses, heat stress causes significant losses to major cereals. These issues can be solved by comprehending the molecular mechanisms of heat stress and creating heat-tolerant varieties. Different breeding and biotechnology techniques in the last decade have been employed to develop heat-stress-tolerant varieties. However, these time-consuming techniques often lack the pace required for varietal improvement in climate change scenarios. Genome editing technologies offer precise alteration in the crop genome for developing stress-resistant cultivars. CRISPR/Cas9 (Clustered regularly interspaced short palindromic repeat/Cas9), one such genome editing platform, recently got scientists' attention due to its easy procedures. It is a powerful tool for functional genomics as well as crop breeding. This review will focus on the molecular mechanism of heat stress and different targets that can be altered using CRISPR/Cas genome editing tools to generate climate-smart cereal crops. Further, heat stress signaling and essential players have been highlighted to provide a comprehensive overview of the topic.


Asunto(s)
Productos Agrícolas , Grano Comestible , Edición Génica , Edición Génica/métodos , Grano Comestible/genética , Productos Agrícolas/genética , Termotolerancia/genética , Respuesta al Choque Térmico/genética , Sistemas CRISPR-Cas/genética , Genoma de Planta/genética , Fitomejoramiento/métodos
5.
J Family Med Prim Care ; 13(6): 2503-2506, 2024 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-39027862

RESUMEN

Thrombotic thrombocytopenic purpura (TTP) is a life-threatening disease present with the classic pentad of microangiopathic hemolytic anemia (MAHA), fever, neurologic changes, thrombocytopenia, and renal dysfunction. In a diagnostic dilemma, therapeutic plasma exchange (TPE) is a choice of life-saving intervention. In this, we assess the efficacy of TPE in a suspected case of post-partum TTP. A 27 years old female was admitted in an emergency on day 8 after a lower segment cesarian section (LSCS) with unresponsive behavior for 3 days and with TTP. She was normal 32 days back with her second, 7-month pregnancy. Ultrasonography (USG) showed an umbilical cord around the neck of the baby. On the fifth post-operative day, she was shifted to emergency with fever, generalized anasarca, gastrointestinal tract (GI) bleeding, low platelet count, and low Hb, with a poor Glasgow coma scale (GCS) of 6. On the bases of serum urea and serum creatinine, she presented acute kidney injury with encephalopathy. At emergency, she was unresponsive to mechanical ventilation and supportive treatment; hence, therapeutic plasma exchange was performed. After eight TPE cycles, the patient presented with an improved hematological and renal profile with good GCS. TPE is helpful and life-saving for suspected TTP patients with AKI.

6.
Sci Total Environ ; 948: 174935, 2024 Oct 20.
Artículo en Inglés | MEDLINE | ID: mdl-39053530

RESUMEN

Forest restoration is an effective method for restoring degraded soil ecosystems (e.g., converting primary tropical forests into rubber monoculture plantations; RM). The effects of forest restoration on microbial community diversity and composition have been extensively studied. However, how rubber plantation-based forest restoration reshapes soil microbial communities, networks, and inner assembly mechanisms remains unclear. Here, we explored the effects of jungle rubber mixed (JRM; secondary succession and natural restoration of RM) plantation and introduction of rainforest species (AR; anthropogenic restoration established by mimicking the understory and overstory tree species of native rainforests) to RM stands on soil physico-chemical properties and microbial communities. We found that converting tropical rainforest (RF) to RM decreased soil fertility and simplified microbial composition and co-occurrence patterns, whereas the conversion of RM to JRM and AR exhibited opposite results. These changes were significantly correlated with pH, soil moisture content (SMC), and soil nutrients, suggesting that vegetation restoration can provide a favorable soil microenvironment that promotes the development of soil microorganisms. The complexity and stability of the bacterial-fungal cross-kingdom, bacterial, and fungal networks increased with JRM and AR. Bacterial community assembly was primarily governed by stochastic (78.79 %) and deterministic (59.09 %) processes in JRM and AR, respectively, whereas stochastic processes (limited dispersion) predominantly shaped fungal assembly across all forest stands. AR has more significant benefits than JRM, such as a relatively slower and natural vegetation succession with more nutritive soil conditions, microbial diversity, and complex and stable microbial networks. These results highlight the importance of sustainable forest management to restore soil biodiversity and ecosystem functions after extensive soil degradation and suggest that anthropogenic restoration can more effectively improve soil quality and microbial communities than natural restoration in degraded rubber plantations.


Asunto(s)
Microbiota , Microbiología del Suelo , Goma , Suelo/química , Hevea , Bosque Lluvioso , Restauración y Remediación Ambiental/métodos , Hongos , Bacterias , Bosques
7.
ACS Appl Mater Interfaces ; 16(30): 39539-39550, 2024 Jul 31.
Artículo en Inglés | MEDLINE | ID: mdl-39031064

RESUMEN

Aqueous electrochromic batteries (ECBs) have recently garnered significant attention within the realm of renewable rechargeable technology due to their potential applicability in diverse multifunctional devices featuring visible-level indicator batteries. However, there exists an imperative to comprehend the underlying structural factors that contribute to achieving an elevated electrochemical performance. In this context, we have synthesized and compared WO3·H2O (HWO) specifically for heightened ECB application as against the performance of a standard anhydrous WO3 (AWO). To unravel the underlying cause, a density functional theory (DFT) investigation is carried out, disclosing a structural deformation of HWO, unlike AWO, due to Jahn-Teller distortion induced by the presence of interlayer water. It results in a fully compatible HWO ion host to devise a zinc-ion aqueous electrolyte electrochromic battery, exhibiting superior redox reactivity, optical modulation (50%), capacity (200 mAh/m2), and cyclic stability. To glean insights into the dynamic structural alterations during the intercalation and deintercalation processes of Zn2+, ex situ X-ray diffraction and Raman spectroscopic studies are carried out. These investigations culminate in the determination that HWO films are better suited for the application than their AWO counterparts. This finding holds promise for advancing the applications of ECBs and represents a significant step forward in this field.

8.
Crit Rev Food Sci Nutr ; : 1-24, 2024 Jul 02.
Artículo en Inglés | MEDLINE | ID: mdl-38957008

RESUMEN

Consumers are increasingly interested in additive-free products with a fresh taste, leading to a growing trend in high pressure processing (HPP) as an alternative to thermal processing. This review explores the impact of HPP on the properties of juices, smoothies, and purees, as well as its practical applications in the food industry. Research findings have explained that HPP is a most promising technology in comparison to thermal processing, in two ways i.e., for ensuring microbial safety and maximum retention of micro and macro nutrients and functional components. HPP preserves natural color and eliminates the need for artificial coloring. The review also emphasizes its potential for enhancing flavor in the beverage industry. The review also discusses how HPP indirectly affects plant enzymes that cause off-flavors and suggests potential hurdle approaches for enzyme inactivation based on research investigations. Scientific studies regarding the improved quality insights on commercially operated high pressure mechanisms concerning nutrient retention have paved the way for upscaling and boosted the market demand for HPP equipment. In future research, the clear focus should be on scientific parameters and sensory attributes related to consumer acceptability and perception for better clarity of the HPP effect on juice and smoothies/purees.

9.
J Virol Methods ; 329: 114995, 2024 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-38972641

RESUMEN

Diagnostics employing multiple modalities have been essential for controlling and managing COVID-19, caused by SARS-CoV-2. However, scaling up Reverse Transcription-Quantitative Polymerase Chain Reaction (RT-qPCR), the gold standard for SARS-CoV-2 detection, remains challenging in low and middle-income countries. Cost-effective and high-throughput alternatives like enzyme-linked immunosorbent assay (ELISA) could address this issue. We developed an in-house SARS-CoV-2 nucleocapsid capture ELISA, and validated on 271 nasopharyngeal swab samples from humans (n = 252), bovines (n = 10), and dogs (n = 9). This ELISA has a detection limit of 195 pg/100 µL of nucleocapsid protein and does not cross-react with related coronaviruses, ensuring high specificity to SARS-CoV-2. Diagnostic performance was evaluated using receiver operating characteristic curve analysis, showing a diagnostic sensitivity of 67.78 % and specificity of 100 %. Sensitivity improved to 74.32 % when excluding positive clinical samples with RT-qPCR Ct values > 25. Furthermore, inter-rater reliability analysis demonstrated substantial agreement (κ values = 0.73-0.80) with the VIRALDTECT II Multiplex RT-qPCR kit and perfect agreement with the CoVeasy™ COVID-19 rapid antigen self-test (κ values = 0.89-0.93). Our findings demonstrated that the in-house nucleocapsid capture ELISA is suitable for SARS-CoV-2 testing in humans and animals, meeting the necessary sensitivity and specificity thresholds for cost-effective, large-scale screening.


Asunto(s)
COVID-19 , Ensayo de Inmunoadsorción Enzimática , SARS-CoV-2 , Sensibilidad y Especificidad , Ensayo de Inmunoadsorción Enzimática/métodos , Ensayo de Inmunoadsorción Enzimática/economía , Humanos , SARS-CoV-2/inmunología , SARS-CoV-2/aislamiento & purificación , SARS-CoV-2/genética , Animales , COVID-19/diagnóstico , Bovinos , Perros , Prueba Serológica para COVID-19/métodos , Prueba Serológica para COVID-19/economía , Análisis Costo-Beneficio , Antígenos Virales/análisis , Antígenos Virales/inmunología , Ensayos Analíticos de Alto Rendimiento/economía , Ensayos Analíticos de Alto Rendimiento/métodos , Nasofaringe/virología , Proteínas de la Nucleocápside de Coronavirus/inmunología , Fosfoproteínas/inmunología
10.
Sci Rep ; 14(1): 13596, 2024 06 12.
Artículo en Inglés | MEDLINE | ID: mdl-38866867

RESUMEN

The RE1 silencing transcription factor (REST) is a driver of sonic hedgehog (SHH) medulloblastoma genesis. Our previous studies showed that REST enhances cell proliferation, metastasis and vascular growth and blocks neuronal differentiation to drive progression of SHH medulloblastoma tumors. Here, we demonstrate that REST promotes autophagy, a pathway that is found to be significantly enriched in human medulloblastoma tumors relative to normal cerebella. In SHH medulloblastoma tumor xenografts, REST elevation is strongly correlated with increased expression of the hypoxia-inducible factor 1-alpha (HIF1α)-a positive regulator of autophagy, and with reduced expression of the von Hippel-Lindau (VHL) tumor suppressor protein - a component of an E3 ligase complex that ubiquitinates HIF1α. Human SHH-medulloblastoma tumors with higher REST expression exhibit nuclear localization of HIF1α, in contrast to its cytoplasmic localization in low-REST tumors. In vitro, REST knockdown promotes an increase in VHL levels and a decrease in cytoplasmic HIF1α protein levels, and autophagy flux. In contrast, REST elevation causes a decline in VHL levels, as well as its interaction with HIF1α, resulting in a reduction in HIF1α ubiquitination and an increase in autophagy flux. These data suggest that REST elevation promotes autophagy in SHH medulloblastoma cells by modulating HIF1α ubiquitination and stability in a VHL-dependent manner. Thus, our study is one of the first to connect VHL to REST-dependent control of autophagy in a subset of medulloblastomas.


Asunto(s)
Autofagia , Neoplasias Cerebelosas , Proteínas Hedgehog , Subunidad alfa del Factor 1 Inducible por Hipoxia , Meduloblastoma , Proteína Supresora de Tumores del Síndrome de Von Hippel-Lindau , Meduloblastoma/metabolismo , Meduloblastoma/patología , Meduloblastoma/genética , Humanos , Proteína Supresora de Tumores del Síndrome de Von Hippel-Lindau/metabolismo , Proteína Supresora de Tumores del Síndrome de Von Hippel-Lindau/genética , Autofagia/genética , Subunidad alfa del Factor 1 Inducible por Hipoxia/metabolismo , Subunidad alfa del Factor 1 Inducible por Hipoxia/genética , Animales , Proteínas Hedgehog/metabolismo , Proteínas Hedgehog/genética , Línea Celular Tumoral , Neoplasias Cerebelosas/metabolismo , Neoplasias Cerebelosas/patología , Neoplasias Cerebelosas/genética , Ratones , Regulación hacia Abajo , Regulación Neoplásica de la Expresión Génica , Ubiquitinación , Proteínas Represoras
11.
Plants (Basel) ; 13(11)2024 May 30.
Artículo en Inglés | MEDLINE | ID: mdl-38891319

RESUMEN

This study was conducted for the comparative analysis of antioxidant activity and untargeted metabolomics of dark- and light-colored sour cherry cultivars grown in Canada. Based on our previous study, we selected four cultivars-'Heimann R', 'Gorsemska', V70142, and 'Montmorency'-to determine the untargeted metabolites and their role in antioxidant activities. A total of 473 metabolites were identified from four sour cherry genotypes using UPLC-ToF-MS. Untargeted metabolomics revealed the dominant chemical groups present in sour cherries. PCA showed that the diversity in sour cherry metabolites was due to the genotype differences indicating iditol, malic acid, chlorobenzene, 2-mercaptobenzothiazole, and pyroglutamic acid as the predominant contributors. The variable importance in the projection (VIP > 1.0) in partial least-squares-discriminant analysis described 20 biomarker metabolites representing the cherry metabolome profiles. A heatmap of Pearson's correlation analysis between the 20 biomarker metabolites and antioxidant activities identified seven antioxidant determinants that displayed the highest correlations with different types of antioxidant activities. TPC and TAC were evaluated using the Folin-Ciocalteu method. The total antioxidant activity was performed using three different assays (ABTS, FRAP, and DPPH). This study of correlating metabolomics and antioxidant activities elucidated that the higher nutritional value and biological functions of sour cherry genotypes can be useful for the development of nutraceutical and functional foods.

12.
Small ; : e2403156, 2024 Jun 14.
Artículo en Inglés | MEDLINE | ID: mdl-38874058

RESUMEN

Energy-efficient glass windows are pivotal in modern infrastructure striving toward the "Zero energy" concept. Electrochromic (EC) energy storage devices emerge as a promising alternative to conventional glass, yet their widespread commercialization is impeded by high costs and dependence on external power sources. Addressing this, redox potential-based self-powered electrochromic (RP-SPEC) devices are introduced leveraging established EC materials like tungsten oxide (WO3) and vanadium-doped nickel oxide (V-NiO) along with aluminum (Al) as an anode. These devices produce open circuit voltages (OCV) exceeding ±0.3 V, enabling autonomous operation for multiple cycles. The WO3 film exhibits 1% transmission and 88% modulation in the colored state at 550 nm with a mere 260 nm thickness. The redox interactions facilitate coloring and bleaching cycles without external power, while photo-charging rejuvenates the system. Notably, the inherent voltages of the RP-SPEC device offer dual functionality, powering electronic devices for up to 81 h. Large-area (≈28 cm2) device feasibility is demonstrated, paving the way for industrial adoption. The RP-SPEC device promises to revolutionize smart window technology by offering both energy efficiency and autonomous operation, thus advancing sustainable infrastructure.

13.
Cureus ; 16(4): e58882, 2024 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-38800300

RESUMEN

INTRODUCTION: Rotavirus-induced viral gastroenteritis outbreaks result in over two million hospitalizations globally yearly. Wastewater-based epidemiology (WBE) has emerged as a crucial tool for detecting and monitoring viral outbreaks. The adoption of WBE has been instrumental in the early detection and surveillance of such viral outbreaks, providing a non-invasive method to assess public health. OBJECTIVE: This study aims to utilize droplet digital polymerase chain reaction (ddPCR) technology to detect and quantify Rotavirus in wastewater samples collected from the Bhopal region of India, thereby contributing to the understanding and management of viral gastroenteritis outbreaks through environmental surveillance. METHODS: In this study, we used ddPCR to detect and quantify Rotavirus in wastewater samples collected from the Bhopal region of India. We monitored its viral presence in municipal sewage treatment plants bi-weekly using an advanced ddPCR assay. Targeting the rotavirus non-structural protein 3 (NSP-3) region with custom primers and TaqMan probes, we detected virus concentration employing polyethylene glycol (PEG). Following RNA isolation, complementary DNA (cDNA) synthesis, and ddPCR analysis, our novel method eliminated standard curve dependence, propelling virus research and treatment forward. RESULTS: Out of the 42 samples collected, a 16.60% positivity rate was observed, indicating a moderate presence of Rotavirus in Bhopal. The wastewater treatment plants (WWTP) attached to a hospital exhibited a 42.85% positivity rate, indicating the need for targeted monitoring. Leveraging ddPCR, precise quantification of rotavirus concentrations (ranging from 0.75 to 28.9 copies/µL) facilitated understanding and supported effective remediation. CONCLUSIONS:  This study emphasizes the importance of vigilant wastewater surveillance, especially in WWTPs with higher rotavirus prevalence. The significance of ddPCR in comparison to conventional and real-time PCR lies in its superior sensitivity and specificity in detecting and quantifying positive samples. Furthermore, it can identify positive samples even in the smallest quantities without the need for a standard curve to evaluate. This makes ddPCR a valuable tool for accurate and precise detection and quantification of samples.

14.
Artículo en Inglés | MEDLINE | ID: mdl-38753476

RESUMEN

The key challenges in cloud computing encompass dynamic resource scaling, load balancing, and power consumption. Accurate workload prediction is identified as a crucial strategy to address these challenges. Despite numerous methods proposed to tackle this issue, existing approaches fall short of capturing the high-variance nature of volatile and dynamic cloud workloads. Consequently, this paper introduces a novel model aimed at addressing this limitation. This paper presents a novel Multiple Controlled Toffoli-driven Adaptive Quantum Neural Network (MCT-AQNN) model to establish an empirical solution to complex, elastic as well as challenging workload prediction problems by optimizing the exploration, adaption, and exploitation proficiencies through quantum learning. The computational adaptability of quantum computing is ingrained with machine learning algorithms to derive more precise correlations from dynamic and complex workloads. The furnished input data point and hatched neural weights are refitted in the form of qubits while the controlling effects of Multiple Controlled Toffoli (MCT) gates are operated at the hidden and output layers of Quantum Neural Network (QNN) for enhancing learning capabilities. Complimentarily, a Uniformly Adaptive Quantum Machine Learning (UAQL) algorithm has evolved to functionally and effectually train the QNN. The extensive experiments are conducted and the comparisons are performed with state-of-the-art methods using four real-world benchmark datasets. Experimental results evince that MCT-AQNN has up to 32%-96% higher accuracy than the existing approaches.

15.
Comput Med Imaging Graph ; 115: 102386, 2024 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-38718562

RESUMEN

A late post-traumatic seizure (LPTS), a consequence of traumatic brain injury (TBI), can potentially evolve into a lifelong condition known as post-traumatic epilepsy (PTE). Presently, the mechanism that triggers epileptogenesis in TBI patients remains elusive, inspiring the epilepsy community to devise ways to predict which TBI patients will develop PTE and to identify potential biomarkers. In response to this need, our study collected comprehensive, longitudinal multimodal data from 48 TBI patients across multiple participating institutions. A supervised binary classification task was created, contrasting data from LPTS patients with those without LPTS. To accommodate missing modalities in some subjects, we took a two-pronged approach. Firstly, we extended a graphical model-based Bayesian estimator to directly classify subjects with incomplete modality. Secondly, we explored conventional imputation techniques. The imputed multimodal information was then combined, following several fusion and dimensionality reduction techniques found in the literature, and subsequently fitted to a kernel- or a tree-based classifier. For this fusion, we proposed two new algorithms: recursive elimination of correlated components (RECC) that filters information based on the correlation between the already selected features, and information decomposition and selective fusion (IDSF), which effectively recombines information from decomposed multimodal features. Our cross-validation findings showed that the proposed IDSF algorithm delivers superior performance based on the area under the curve (AUC) score. Ultimately, after rigorous statistical comparisons and interpretable machine learning examination using Shapley values of the most frequently selected features, we recommend the two following magnetic resonance imaging (MRI) abnormalities as potential biomarkers: the left anterior limb of internal capsule in diffusion MRI (dMRI), and the right middle temporal gyrus in functional MRI (fMRI).


Asunto(s)
Biomarcadores , Lesiones Traumáticas del Encéfalo , Aprendizaje Automático , Neuroimagen , Humanos , Lesiones Traumáticas del Encéfalo/diagnóstico por imagen , Lesiones Traumáticas del Encéfalo/complicaciones , Neuroimagen/métodos , Masculino , Femenino , Imagen por Resonancia Magnética/métodos , Adulto , Algoritmos , Epilepsia Postraumática/diagnóstico por imagen , Epilepsia Postraumática/etiología , Imagen Multimodal/métodos , Convulsiones/diagnóstico por imagen , Teorema de Bayes , Persona de Mediana Edad
16.
Diagn Microbiol Infect Dis ; 109(2): 116283, 2024 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-38574446

RESUMEN

The well known dermatophyte infections caused by Trichophyton species are an ambiguous problem to treat using the present arsenal of antifungals. This study expounds on the effect of inhibition of sphingolipid pathway on Trichophyton growth. Findings from the drug susceptibility assays suggest sphingolipid inhibition severely restricts the growth of T. interdigitale and T. tonsurans. The observed synergistic effects of combinations of sphingolipid inhibitor and conventional drugs provide a promising treatment strategy against Trichophyton infection.


Asunto(s)
Antifúngicos , Pruebas de Sensibilidad Microbiana , Esfingolípidos , Trichophyton , Antifúngicos/farmacología , Esfingolípidos/biosíntesis , Trichophyton/efectos de los fármacos , Humanos , Sinergismo Farmacológico , Tiña/microbiología , Tiña/tratamiento farmacológico
17.
Arch Virol ; 169(5): 102, 2024 Apr 17.
Artículo en Inglés | MEDLINE | ID: mdl-38630315

RESUMEN

A highly divergent bovine calicivirus was identified in an Indian calf with enteritis. The whole genome of this virus was sequenced, revealing distinct amino acid motifs in the polyprotein encoded by open reading frame 1 (ORF1) that are unique to caliciviruses. Phylogenetic analysis showed that it was related to members of the genus Nebovirus of the family Caliciviridae. Although it showed only 33.7-34.2% sequence identity in the VP1 protein to the nebovirus prototype strains, it showed 90.6% identity in VP1 to Kirklareli virus, a nebovirus detected in calves with enteritis in Turkey in 2012. An in-house-designed and optimized reverse transcription polymerase chain reaction (RT-PCR) assay was used to screen 120 archived bovine diarrhoeic fecal samples, 40 each from the Indian states of Uttar Pradesh, Haryana, and Himachal Pradesh, revealing frequent circulation of these divergent caliciviruses in the bovine population, with an overall positivity rate of 64.17% (77/120). This underscores the importance of conducting a comprehensive investigation of the prevalence of these divergent caliciviruses and assessing their associations with other pathogens responsible for enteritis in India.


Asunto(s)
Caliciviridae , Enteritis , Virus ARN , Bovinos , Animales , Filogenia , Caliciviridae/genética , India/epidemiología
18.
3 Biotech ; 14(5): 137, 2024 May.
Artículo en Inglés | MEDLINE | ID: mdl-38682095

RESUMEN

Globally, more than 5 billion tons of crop residue (mainly rice straw) are produced yearly, and their management results in pollution, which kills microbes and limits soil nutrient recycling. Therefore, on-farm management that boosts degradation speed will improve the practicability of crop residue retention practices. The present study evaluated the 21 microbial isolates (Pseudomonas, Bacillus, Aspergillus, Trichoderma, Fusarium, and Rhizopus) from the soil of different agroclimatic zones obtained from rice fields for in situ straw degradation. The microbial diversity of these isolates was analyzed using 16 s rRNA and 18 s rRNA primers from various soil samples. The rice straw was used for degradation from isolated pathogens individually and in combination, and the results were analyzed using FTIR (Fourier transform infrared spectroscopy). The result suggested that the straw's degradation was the maximum with Trichoderma and Aspergillus, followed by the mixture of the isolates (Pseudomonas, Bacillus, Aspergillus, Trichoderma, Fusarium, and Rhizopus). Furthermore, SEM (scanning electron microscope) observed the degradation rate on different days of inoculation (7, 14, 28, 56, 70, and 100 DAI). The results showed that 90 DAI caused the highest degradation of rice straw. Therefore, Trichoderma containing microbial consortia could be used for vermicompost production from rice straw in field conditions, and it could increase crop productivity. Overall, our study added knowledge in rice straw management through a microbial consortium for better utilization in predominantly rice-growing countries. Supplementary Information: The online version contains supplementary material available at 10.1007/s13205-024-03982-z.

19.
FEMS Yeast Res ; 242024 Jan 09.
Artículo en Inglés | MEDLINE | ID: mdl-38444195

RESUMEN

In this study, we explored the sphingolipid (SL) landscape in Candida auris, which plays pivotal roles in fungal biology and drug susceptibility. The composition of SLs exhibited substantial variations at both the SL class and molecular species levels among clade isolates. Utilizing principal component analysis, we successfully differentiated the five clades based on their SL class composition. While phytoceramide (PCer) was uniformly the most abundant SL class in all the isolates, other classes showed significant variations. These variations were not limited to SL class level only as the proportion of different molecular species containing variable number of carbons in fatty acid chains also differed between the isolates. Also a comparative analysis revealed abundance of ceramides and glucosylceramides in fluconazole susceptible isolates. Furthermore, by comparing drug-resistant and susceptible isolates within clade IV, we uncovered significant intraclade differences in key SL classes such as high PCer and low long chain base (LCB) content in resistant strains, underscoring the impact of SL heterogeneity on drug resistance development in C. auris. These findings shed light on the multifaceted interplay between genomic diversity, SLs, and drug resistance in this emerging fungal pathogen.


Asunto(s)
Antifúngicos , Candida , Antifúngicos/farmacología , Candida auris , Esfingolípidos , Farmacorresistencia Fúngica , Pruebas de Sensibilidad Microbiana
20.
J Biomol Struct Dyn ; : 1-20, 2024 Mar 18.
Artículo en Inglés | MEDLINE | ID: mdl-38500246

RESUMEN

Tropical calcific pancreatitis (TCP) is a juvenile form of non-alcoholic chronic pancreatitis seen exclusively in tropical countries. The disease poses a high risk of complications, including pancreatic diabetes and cancer, leading to significant mortality due to poor diagnosis and ineffective treatments. This study employed whole exome sequencing (WES) of 5 TCP patient samples to identify genetic variants associated with TCP. Advanced computational techniques were used to gain atomic-level insights into disease progression, including microsecond-scale long MD simulations and essential dynamics. In silico virtual screening was performed to identify potential therapeutic compounds targeting the mutant protein using the Asinex and DrugBank compound library. WES analysis predicted several single nucleotide variants (SNVs) associated with TCP, including a novel missense variant (c.T1802A or p.V601E) in the TLK2 gene. Computational analysis revealed that the p.V601E mutation significantly affected the structure of the TLK2 kinase domain and its conformational dynamics, altering the interaction profile between ATP and the binding pocket. These changes could impact TLK2's kinase activity and functions, potentially correlating with TCP progression. Promising lead compounds that selectively bind to the TLK2 mutant protein were identified, offering potential for therapeutic interventions in TCP. These findings hold great potential for future research.Communicated by Ramaswamy H. Sarma.

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