Core taxa underpin soil microbial community turnover during secondary succession.

Understanding the processes that underpin the community assembly of bacteria is a key challenge in microbial ecology. We studied soil bacterial communities across a large-scale successional gradient of managed and abandoned grasslands paired with mature forest sites to disentangle drivers of community turnover and assembly. Diversity partitioning and phylogenetic null-modelling showed that bacterial communities in grasslands remain compositionally stable following abandonment and secondary succession but they differ markedly from fully afforested sites. Zeta diversity analyses revealed the persistence of core microbial taxa that both reflected and differed from whole-scale community turnover patterns. Differences in soil pH and C:N were the main drivers of community turnover between paired grassland and forest sites and the variability of pH within successional stages was a key factor related to the relative dominance of deterministic assembly processes. Our results indicate that grassland microbiomes could be compositionally resilient to abandonment and secondary succession and that the major changes in microbial communities between grasslands and forests occur fairly late in the succession when trees have established as the dominant vegetation. We also show that core taxa may show contrasting responses to management and abandonment in grasslands.

Soil moisture determines nitrous oxide emission and uptake.

Soils are major sources and sinks of nitrous oxide (N2O). The main pathway of N2O emission is performed through soil denitrification; however, the uptake phenomenon in denitrification is overlooked, leading to an underestimation of N2O production. Soil moisture strongly influences denitrification rates, but exact quantifications coupled with nosZ, nirK, and nirS gene analysis remain inadequately unaccounted for. In this study, a 15N-N2O pool dilution (15N2OPD) method was used to measure N2O production rates under different soil moisture levels. Therefore, 20%, 40%, 60%, 80% and 100% soil water holding capacity (WHC) were used. The results revealed that N2O uptake rates increased proportionally with soil moisture content and peaked at 80% WHC with 4.17 ± 2.74 µg N kg-1 soil h-1. The N2O production and net emission rates similarly peaked at 80% WHC, reading at 32.50 ± 4.86 and 27.63 ± 3.09 µg N kg-1 soil h-1 during the incubation period (18 days). Soil moisture content increased the gene copy number of the nosZ, NH4+ content, and denitrification potential in soil. N2O uptake at WHC 80-100% was significantly greater than that at WHC 20-60%. It was attributed to a decrease in O2 and the high NO3- concentration inhibition (> 50 mg N kg-1 of soil NO3--N content). Principal components analysis (PCA) indicated that the number of nosZ genes was the major driver of N2O uptake, especially nosZ clade II. Thus, the results of this study deepen our understanding of the mechanisms underpinning N2O sources and sinks in soils and provide a useful gene-based indicator to estimate N2O uptake.