Characterization of the novel phage vB_BceP_LY3 and its potential role in controlling Bacillus cereus in milk and rice.

Bacillus cereus is a foodborne pathogen that induces vomiting and diarrhea in affected individuals. It exhibits resistance to traditional sterilization methods and has a high contamination rate in dairy products and rice. Therefore, the development of a new food safety controlling strategy is necessary. In this research, we isolated and identified a novel phage named vB_BceP_LY3, which belongs to a new genus of the subfamily Northropvirinae. This phage demonstrates a short latency period and remains stable over a wide range of temperatures (4-60 °C) and pH levels (4-11). The 28,124 bp genome of LY3 does not contain any antibiotic-resistance genes or virulence factors. With regards to its antibacterial properties, LY3 not only effectively inhibits the growth of B. cereus in TSB (tryptic soy broth), but also demonstrates significant inhibitory effects in various food matrices. Specifically, LY3 treatment at 4 °C with a high MOI (MOI = 10,000) can maintain B. cereus levels below the detection limit for up to 24 h in milk. LY3 represents a safe and promising biocontrol agent against B. cereus, possessing long-term antibacterial capabilities and stability.

The determination of the optimal threshold on measurement of thyroid volume using quantitative SPECT/CT for Graves' hyperthyroidism.

PURPOSE: To investigate the optimal threshold for measuring thyroid volume in patients with Grave's hyperthyroidism (GH) by SPECT/CT. MATERIALS AND METHODS: A 53 mL butterfly-shaped hollow container made of two 45-degree transparent elbows was put into a NEMA IEC phantom tank. The butterfly-shaped container and the tank were then filled with Na99mTcO4 of different radioactive concentrations, respectively, which could simulate thyroid gland with GH by different target-to-background ratios (T/B) (200:1, 600:1, 1000:1). The different T/B of planar imaging and SPECT/CT were acquired by a Discovery NM/CT 670 Pro SPECT/CT. With Thyroid software (Version 4.0) of GE-Xeleris workstation, the region of the thyroid gland in planar imaging was delineated. The thyroid area and average long diameter of both lobes were substituted into the Allen formula to calculate the thyroid volume. The calculation error was compared with the actual volume. Q-Metrix software was used to perform CT-based attenuation correction, scatter correction, resolution recovery. Ordered-subsets expectation maximization was used to reconstruct SPECT data. 20%, 25%, 30%, 40%, 50%, 60% thresholds were selected to automatically delineate the volume of interest and compared with the real volume, which determinated the optimal threshold. We measured the thyroid volume of 40 GH patients using the threshold and compared the volumes obtained by planar imaging and ultrasound three-dimensional. The differences of the volumes with different T/B and thresholds were compared by the ANOVA and least significant difference t test. The volumes delineated by SPECT/CT were evaluated using ANOVA, least significant difference t test, correlation analysis and, linear regression and Bland-Altman concordance test plot. The differences and consistency of thyroid volume were compared among the above three methods. RESULTS: There was no significant difference in the results between different T/B models (P > 0.05). The thyroid volume calculated by the planar imaging formula method was higher than the real volume, with an average overestimation of 22.81%. The volumes delineated by SPECT/CT threshold automatically decreased while the threshold increased. There were significant differences between groups with different thresholds (P < 0.001). With an average error of 3.73%, the thyroid volume analyzed by the threshold of 25% was close to the results of ultrasound measurement (P > 0.05). Thyroid volume measured by planar imaging method was significantly higher than ultrasound and SPECT/CT threshold automatic delineation method (P < 0.05). The agreement between the SPECT/CT 25% threshold and ultrasound (r = 0.956, b = 0.961) was better than that between the planar imaging and ultrasound (r = 0.590, b = 0.574). The Bland-Altman plot also showed that the thyroid volume measured by the 25% threshold automatic delineation method was in good agreement with the ultrasound measurement. CONCLUSIONS: The T/B has no effect on the measurement of thyroid volume in GH patients; planar imaging method can significantly overestimate thyroid volume in GH patients, and 25% threshold automatic delineation method can obtain more accurate thyroid volume in GH patients.

Genome Characterization of the Novel Lytic Enterobacter cloacae Phage vB_EclM_Q7622.

Enterobacter cloacae is a widespread opportunistic pathogen that causes urinary tract infection. The abuse of antibiotics enabled multidrug-resistant strains to spread. Bacteriophage therapy is a naturally, safe, and efficient alternative treatment technology against multi-resistant bacteria. In this study, a virulent phage vB_EclM_Q7622 (Q7622) was isolated from the sewage of Jiangcun poultry market in Guangzhou city. Transmission electron microscopy indicated that Q7622 had an icosahedral head (97.8 ± 5.6 nm in diameter) and a short, contractile tail (113.7 ± 4.5 nm). Its double-stranded DNA genome is composed of 173,871 bp with a GC content of 40.02%. It possesses 297 open reading frames and 9 tRNAs. No known virulence and resistance genes were detected, indicated that phage Q7622 could be used for pathogens prevention and control safely. Comparative genomic and phylogenetic analysis showed that Q7622 was highly similar to the phages vB_EclM_CIP9 and vB_EhoM-IME523. The highest nucleotide similarity between Q7622 and the similar phages in NCBI calculated by pyANI and VIRIDIC were 94.9% and 89.1% with vB_EhoM-IME523 respectively, below 95%. Thus, according to the result of nucleotide similarity calculation results, Q7622 was a novel virulent Enterobacter cloacae phage strain of the genus Kanagawavirus.

Study on the influences of the fractal dimension of the root system and slope degree on the slope stability.

The problem of quantifying the effect of the alfalfa root morphology on the stability of the shallow surface layer of the slope of the Haizhou open-pit coal mine and the optimal slope degree in terms of the reinforcement of the shallow surface layer by the alfalfa root system was addressed. In this study, the mechanical parameters of plain soil and alfalfa root-soil composite samples were measured by indoor soil tests and triaxial compression tests, and a calculation model for the slope of the Haizhou open-pit coal mine was established in FLAC3D numerical simulation software to analyze the influence of the alfalfa root system on the maximum displacement of the shallow surface layer of the slope and the relationship with the fractal dimension of the alfalfa root system. The fractal dimension was applied to quantify the influence of the alfalfa root morphology to further investigate the relationship between the fractal dimension of the root system and the optimal slope of the shallow surface layer. The analysis showed that the fractal dimension of the alfalfa root system varied at different slope degrees, i.e., 40° > flat > 30° > 50°; the maximum soil displacement of the shallow surface layer of the slope increased with slope in nonlinear increments. Analysis of the fractal dimension of the alfalfa root system and the maximum displacement reduction rate at the different slope degrees revealed that the optimal slope degree of the shallow surface layer reinforced by alfalfa varied between 30° and 40°. The study results could provide a basis for further explaining the nature of the role of the alfalfa root morphology in reinforcing shallow surface soil and the optimal slope degree of the slope of the Haizhou open-pit coal mine reinforced by alfalfa roots.

Characterization and genome analysis of a novel Vibrio parahaemolyticus phage vB_VpP_DE17.

A novel phage vB_VpP_DE17, which infects Vibrio parahaemolyticus, was isolated from the sewer of the Huangsha aquatic market in Guangzhou. Transmission electron microscopy indicated that DE17 had an icosahedral head (47 ± 2 nm diameter) and a short, non-contractile tail (17 ± 2 nm). The genome of DE17 was a double-stranded linear DNA with a length of 43,397 bp and GC content of 49.23%. In total, 49 putative open reading frames (ORFs) were predicted and could be divided into six modules: DNA metabolism, lysis, packaging, structure, additional function, and hypothetical proteins. Taxonomic analysis revealed that the phage belonging to the genus of Maculvirus, Autographivirinae subfamily, Podoviridae family. DE17 had a short latent period of 5 min with burst size of 80 pfu/cell. Its optimum temperature and pH ranges were 4 °C-50 °C and 5-10, respectively; it was completely inactivated after 20 min of ultraviolet irradiation. No transfer RNA (tRNA), virulence associated, or antibiotic resistance genes were identified. Bacterial challenge test revealed that DE17 had a certain inhibitory effect on V. parahaemolyticus within 6 h. Characterization, genomic analysis and in vitro antibacterial assays of DE17 will further enhance our understanding of phage biology and diversity.

Determination of optimum optoelectronic properties in vertically stacked MoS2/h-BN/WSe2 van der Waals heterostructures.

Current achievements show that inserting an insulator at the interface in van der Waals (vdW) heterostructures can improve the photoelectric conversion efficiency. However, the underlying mechanism of the intercalated insulator effect on photocarrier collection and recombination, etc., remains unclear at the atomic level. Herein, we investigate the influence of intercalated hexagonal boron nitride (h-BN) on the optoelectronic properties of MoS2/WSe2 vdW heterostructures based on the interface bond relaxation and detailed balance principles. It was found that the band offsets (barrier height) at the heterointerface decrease with increasing h-BN size and decreasing transition metal dichalcogenide (TMD) thickness. Moreover, the power conversion efficiency (PCE) in monolayer MoS2/11-layers h-BN/monolayer WSe2 can reach 3.23% and enhances with increasing thickness of TMDs. Also, the optimal thickness of h-BN in MoS2/h-BN/WSe2 decreases from 3.64 to 2.86 nm as the thickness of TMDs increases. Our results show that the PCE and open-circuit voltage of the MoS2/h-BN/WSe2 vdW heterostructure are obviously improved compared with the bilayer heterostructure without h-BN, and this further proves the feasibility of the intercalated insulator as a booster for highly efficient photovoltaic and optoelectronic nanodevices.