The effect of grazing system intensification on the growth and meat quality of beef cattle in the Brazilian Atlantic Forest biome.

This study was carried out to evaluate the effects of four levels of intensification of grazing systems: 1) degraded pasture - DP; 2) irrigated pasture with high stocking rate - IHS; 3) dryland pasture with high stocking rate - DHS; 4) dryland pasture with moderate stocking rate - DMS; on growth, muscle development and meat quality of Nellore steers (271±2.2kg of live body weight - BW; 15months old) during two consecutive periods (17 and 15months). The final BW, the average daily BW gain, the hot carcass weight and the dress percentage were greater (P<0.0001), and the ribeye area tended to be greater (P=0.085), in the intensified systems compared to the degraded system. Animals in all systems presented similar back fat. Muscle development increased with the intensification of the grazing systems and meat quality was not affected.

Prediction of the chemical body composition of Nellore and crossbreed bulls.

Young Nellore and crossbreed bulls were comparatively slaughtered to generate equation models for predicting the chemical composition of the empty body and carcass from the chemical composition of the Hankins and Howe section (; ). Data were collected from 236 animals from different genetic groups: Nellore, one-half Canchim + one-half Nellore, one-half Angus + one-half Nellore, and one-half Simmental + one-half Nellore, with 48 baseline animals (BW range from 218 to 433 kg) and 188 animals finished in the feedlot (BW range from 356 to 618 kg). The chemical composition prediction equation model was developed for all genetic groups using stepwise regression analysis. Across all animals, the percentages of water and ether extract in the HH section were highly correlated ( < 0.001) with the percentages in the carcass ( = 0.911 and = 0.901, respectively, for water content of the carcass [HOC] and = 0.921 and = 0.921, respectively, for ether extract content of the carcass [EEC]) and empty body ( = 0.937 and = 0.926, respectively, for water content of the empty body [HOEB] and = 0.935 and = 0.939, respectively, for ether extract content of the empty body [EEEB]). The best prediction models were for the traits of empty body weight, HOEB, EEEB, HOC, and EEC. Determination coefficients for predicting the dependent variables obtained from the carcass composition were lower than those obtained from the empty body composition. It was concluded that the chemical composition of the empty body and the carcass can be predicted from the composition of the HH section, using a general equation for different genetic groups.

Effect of the genetic group, production system and sex on the meat quality and sensory traits of beef from crossbred animals.

The crossbreeding of two or more breeds from the Bos taurus and Bos indicus species is an alternative for obtaining high-quality meat from animals adapted to tropical climates. Quality and sensory attributes of beef, mainly its tenderness and flavour, are very important with regard to the consumer's point of view. This study aimed to evaluate the physico-chemical and sensory characteristics of crossbred young bulls and heifers, the offspring of Angus or Limousin bulls and 1/2 Angus + 1/2 Nellore or 1/2 Simental + 1/2 Nellore cows that were finished on feedlot or pasture. Meat quality traits (pH, colour, cooking loss, water holding capacity and shear force) and sensory parameters (characteristic beef aroma/flavour intensity, strange aroma/flavour intensity, tenderness and juiciness descriptive attributes, flavour, texture (tenderness) and overall acceptance) were evaluated. The genetic group had an effect on the beef pH, but it was not as relevant as the effect of the combination between the production system and the sex or genetic group, which affected many of the quality and sensory traits.

A single nucleotide polymorphism in NEUROD1 is associated with production traits in Nelore beef cattle.

Feed efficiency and carcass characteristics are late-measured traits. The detection of molecular markers associated with them can help breeding programs to select animals early in life, and to predict breeding values with high accuracy. The objective of this study was to identify polymorphisms in the functional and positional candidate gene NEUROD1 (neurogenic differentiation 1), and investigate their associations with production traits in reference families of Nelore cattle. A total of 585 steers were used, from 34 sires chosen to represent the variability of this breed. By sequencing 14 animals with extreme residual feed intake (RFI) values, seven single nucleotide polymorphisms (SNPs) in NEUROD1 were identified. The investigation of marker effects on the target traits RFI, backfat thickness (BFT), ribeye area (REA), average body weight (ABW), and metabolic body weight (MBW) was performed with a mixed model using the restricted maximum likelihood method. SNP1062, which changes cytosine for guanine, had no significant association with RFI or REA. However, we found an additive effect on ABW (P ≤ 0.05) and MBW (P ≤ 0.05), with an estimated allele substitution effect of -1.59 and -0.93 kg0.75, respectively. A dominant effect of this SNP for BFT was also found (P ≤ 0.010). Our results are the first that identify NEUROD1 as a candidate that affects BFT, ABW, and MBW. Once confirmed, the inclusion of this SNP in dense panels may improve the accuracy of genomic selection for these traits in Nelore beef cattle as this SNP is not currently represented on SNP chips.

Variation in myogenic differentiation 1 mRNA abundance is associated with beef tenderness in Nelore cattle.

The myogenic differentiation 1 gene (MYOD1) has a key role in skeletal muscle differentiation and composition through its regulation of the expression of several muscle-specific genes. We first used a general linear mixed model approach to evaluate the association of MYOD1 expression levels on individual beef tenderness phenotypes. MYOD1mRNA levels measured by quantitative polymerase chain reactions in 136 Nelore steers were significantly associated (P ≤ 0.01) with Warner-Bratzler shear force, measured on the longissimus dorsi muscle after 7 and 14 days of beef aging. Transcript abundance for the muscle regulatory gene MYOD1 was lower in animals with more tender beef. We also performed a co-expression network analysis using whole transcriptome sequence data generated from 30 samples of longissimus muscle tissue to identify genes that are potentially regulated by MYOD1. The effect of MYOD1 gene expression on beef tenderness may emerge from its function as an activator of muscle-specific gene transcription such as for the serum response factor (C-fos serum response element-binding transcription factor) gene (SRF), which determines muscle tissue development, composition, growth and maturation.

Feed efficiency indexes and their relationships with carcass, non-carcass and meat quality traits in Nellore steers.

Five hundred and seventy-five Nellore steers were evaluated for residual feed intake and residual feed intake and gain and their relationships between carcass, non-carcass and meat quality traits. RFI was measured by the difference between observed and predicted dry matter intake and RIG was obtained by the sum of -1*RFI and residual gain. Efficient and inefficient animals were classified adopting ±0.5 standard deviations from RFI and RIG mean. A mixed model was used including RFI or RIG and contemporary group as fixed effects, initial age as covariate and sire and experimental period as random effects, testing the significance of the regression slope for each evaluated trait. RIG was positively related to longissimus muscle area. Efficient-RFI animals had lower liver and internal fat proportions compared to inefficient-RFI animals. Efficient-RFI and efficient-RIG animals had 11.8% and 11.2% lower extracted intramuscular fat, compared to inefficient-RFI and inefficient-RIG animals, respectively. Efficient-RFI animals had tougher meat compared to inefficient-RFI animals.

The mitogenome of Onchocerca volvulus from the Brazilian Amazonia focus.

We report here the first complete mitochondria genome of Onchocerca volvulus from a focus outside of Africa. An O. volvulus mitogenome from the Brazilian Amazonia focus was obtained using a combination of high-throughput and Sanger sequencing technologies. Comparisons made between this mitochondrial genome and publicly available mitochondrial sequences identified 46 variant nucleotide positions and suggested that our Brazilian mitogenome is more closely related to Cameroon-origin mitochondria than West African-origin mitochondria. As well as providing insights into the origins of Latin American onchocerciasis, the Brazilian Amazonia focus mitogenome may also have value as an epidemiological resource.

Relationship of efficiency indices with performance, heart rate, oxygen consumption, blood parameters, and estimated heat production in Nellore steers.

The objective of this study was to examine the relationship of efficiency indices with performance, heart rate, oxygen consumption, blood parameters, and estimated heat production (EHP) in Nellore steers. Eighteen steers were individually lot-fed diets of 2.7 Mcal ME/kg DM for 84 d. Estimated heat production was determined using oxygen pulse (OP) methodology, in which heart rate (HR) was monitored for 4 consecutive days. Oxygen pulse was obtained by simultaneously measuring HR and oxygen consumption during a 10- to 15-min period. Efficiency traits studied were feed efficiency (G:F) and residual feed intake (RFI) obtained by regression of DMI in relation to ADG and midtest metabolic BW (RFI). Alternatively, RFI was also obtained based on equations reported by the NRC's to estimate individual requirement and DMI (RFI calculated by the NRC [1996] equation [RFI]). The slope of the regression equation and its significance was used to evaluate the effect of efficiency indices (RFI, RFI, or G:F) on the traits studied. A mixed model was used considering RFI, RFI, or G:F and pen type as fixed effects and initial age as a covariate. For HR and EHP variables, day was included as a random effect. There was no relationship between efficiency indices and back fat depth measured by ultrasound or daily HR and EHP ( > 0.05). Because G:F is obtained in relation to BW, the slope of G:F was positive and significant ( < 0.05). Regardless of the method used, efficient steers had lower DMI ( < 0.05). The initial LM area was indirectly related to RFI and RFI ( < 0.05); however, the final muscle area was related to only RFI. Oxygen consumption per beat was not related to G:F; however, it was lower for RFI- and RFI-efficient steers, and consequently, oxygen volume (mL·min·kg) and OP (µL O·beat·kg) were also lower ( < 0.05). Blood parameters were not related to RFI and RFI ( > 0.05); however, G:F-efficient steers showed lower hematocrit and hemoglobin concentrations ( < 0.05). Differences in EHP between efficient and inefficient animals were not directly detected. Nevertheless, differences in oxygen consumption and OP were detected, indicating that the OP methodology may be useful to predict growth efficiency.

Genome scan for meat quality traits in Nelore beef cattle.

Meat quality traits are economically important because they affect consumers' acceptance, which, in turn, influences the demand for beef. However, selection to improve meat quality is limited by the small numbers of animals on which meat tenderness can be evaluated due to the cost of performing shear force analysis and the resultant damage to the carcass. Genome wide-association studies for Warner-Bratzler shear force measured at different times of meat aging, backfat thickness, ribeye muscle area, scanning parameters [lightness, redness (a*), and yellowness] to ascertain color characteristics of meat and fat, water-holding capacity, cooking loss (CL), and muscle pH were conducted using genotype data from the Illumina BovineHD BeadChip array to identify quantitative trait loci (QTL) in all phenotyped Nelore cattle. Phenotype count for these animals ranged from 430 to 536 across traits. Meat quality traits in Nelore are controlled by numerous QTL of small effect, except for a small number of large-effect QTL identified for a*fat, CL, and pH. Genomic regions harboring these QTL and the pathways in which the genes from these regions act appear to differ from those identified in taurine cattle for meat quality traits. These results will guide future QTL mapping studies and the development of models for the prediction of genetic merit to implement genomic selection for meat quality in Nelore cattle.

A SNP in ASAP1 gene is associated with meat quality and production traits in Nelore breed.

The ASAP1 gene is located in a QTL region for meat production traits and to access the role of the ASAP1 gene, the association between a SNP in this gene and production traits in beef cattle was studied. For this, about 270 steers of reference families of Nelore breed were used. The investigation of marker effects on the traits was performed using a mixed model under the restricted maximum likelihood method. Novel association of a SNP in the ASAP1 gene and shear force measured at 24 h post mortem (P≤0.0083) was described in this population of Nelore cattle. This polymorphism accounted for 1.13% of the total additive variance and 17.51% of total phenotypic variance of the trait, suggesting that this marker could be used in marker assisted selection.

Características da carcaça e da carne de bovinos sob diferentes dietas, em confinamento / Carcass and meat characteristic of cattle receiving differents diets in feedlot

Avaliaram-se as características qualitativas da carcaça e da carne de 10 tourinhos, de 10 machos castrados e de 10 fêmeas da raça Canchim, terminados em confinamento e alimentados com: 1 - silagem de milho e concentrado contendo farelo de soja, milho e polpa cítrica (SM) e 2 - cana-de-açúcar e concentrado contendo farelo de soja, milho, grãos de girassol e polpa cítrica (CA). O período experimental foi de 105 dias, e o delineamento foi o inteiramente ao acaso, em esquema fatorial 3 x 2 (3 condições sexuais e 2 dietas). Não foram observadas interações e os tourinhos apresentaram maiores (P<0,05) peso da carcaça quente e da área de olho de lombo, maior rendimento de dianteiro e menor rendimento de traseiro em relação aos machos castrados e às fêmeas. Nas amostras de contrafilé, não houve diferença entre tratamentos quanto à força de cisalhamento, pH, perdas totais por gotejamento e capacidade de retenção de água e cor da carne. Os machos castrados e as fêmeas apresentaram carne de melhor textura. As dietas SM e CA podem ser utilizadas na terminação de bovinos em confinamento.

The carcass and meat qualitative characteristics of 10 young bulls, 10 castrated males, and 10 females of Canchim breed finished in feedlot were evaluated. Animals were fed: 1 - corn silage and concentrate containing soybean meal, corn and citrus pulp (CS), and 2 - sugar cane and concentrate containing soybean meal, corn, sunflower grains, and citrus pulp (SC). The data were analized by completely randomized design in a factorial 3x2 arrangement (three sexual conditions x two diets), and the experimental period lasted 105 days. No interactions were observed and the young bulls presented higher (P<0.05) hot carcass weights and loin area, higher hindquarter and lower forequarter yields in relation to the castrated males and females. The samples of loin did not show differences among treatments in relation to shear force, pH, total losses due dripping on capacity of water retention, and meat color. The castrated males and females presented better texture of meat. The CS and SC diets can be used in finishing cattle under confinement.