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1.
J Chem Phys ; 160(16)2024 Apr 28.
Artículo en Inglés | MEDLINE | ID: mdl-38651806

RESUMEN

The rates of many electrocatalytic reactions can be strongly affected by the structure and dynamics of the electrochemical double layer, which in turn can be tuned by the concentration and identity of the supporting electrolyte's cation. The effect of cations on an electrocatalytic process depends on a complex interplay between electrolyte components, electrode material and surface structure, applied electrode potential, and reaction intermediates. Although cation effects remain insufficiently understood, the principal mechanisms underlying cation-dependent reactivity and selectivity are beginning to emerge. In this Perspective, we summarize and critically examine recent advances in this area in the context of the hydrogen evolution reaction (HER) and CO2-to-CO conversion, which are among the most intensively studied and promising electrocatalytic reactions for the sustainable production of commodity chemicals and fuels. Improving the kinetics of the HER in base and enabling energetically efficient and selective CO2 reduction at low pH are key challenges in electrocatalysis. The physical insights from the recent literature illustrate how cation effects can be utilized to help achieve these goals and to steer other electrocatalytic processes of technological relevance.

2.
J Am Chem Soc ; 146(1): 878-883, 2024 Jan 10.
Artículo en Inglés | MEDLINE | ID: mdl-38154046

RESUMEN

Molecular Ir catalysts have emerged as an important class of model catalysts for understanding structure-activity relationships in water oxidation, a reaction that is central to renewable fuel synthesis. Prior efforts have mostly focused on controlling and elucidating the emergence of active species from prepared precursors. However, the development of efficient and stable molecular Ir catalysts also necessitates probing of reaction intermediates. To date, relatively little is known about the key intermediates in the cycles of the molecular Ir catalysts. Herein, we probed the catalytic cycle of a homogeneous Ir catalyst ("blue dimer") at a Au electrode/aqueous electrolyte interface by combining surface-enhanced infrared absorption spectroscopy (SEIRAS) with phase-sensitive detection (PSD). Cyclic voltammograms (CVs) from 1.4 to 1.7 VRHE (RHE = reversible hydrogen electrode) give rise to a band at ∼818 cm-1, whereas CVs from 1.4 to ≥1.85 VRHE generate an additional band at ∼1146 cm-1. Isotope labeling experiments indicate that the bands at ∼818 and ∼1146 cm-1 are attributable to oxo (IrV═O) and superoxo (IrIV-OO•) moieties, respectively. This study establishes PSD-SEIRAS as a sensitive tool for probing water oxidation cycles at electrode/electrolyte interfaces and demonstrates that the relative abundance of two key intermediates can be tuned by the thermodynamic driving force of the reaction.

3.
Angew Chem Int Ed Engl ; 62(34): e202307909, 2023 Aug 21.
Artículo en Inglés | MEDLINE | ID: mdl-37382150

RESUMEN

Solar water oxidation is a critical step in artificial photosynthesis. Successful completion of the process requires four holes and releases four protons. It depends on the consecutive accumulation of charges at the active site. While recent research has shown an obvious dependence of the reaction kinetics on the hole concentrations on the surface of heterogeneous (photo)electrodes, little is known about how the catalyst density impacts the reaction rate. Using atomically dispersed Ir catalysts on hematite, we report a study on how the interplay between the catalyst density and the surface hole concentration influences the reaction kinetics. At low photon flux, where surface hole concentrations are low, faster charge transfer was observed on photoelectrodes with low catalyst density compared to high catalyst density; at high photon flux and high applied potentials, where surface hole concentrations are moderate or high, slower surface charge recombination was afforded by low-density catalysts. The results support that charge transfer between the light absorber and the catalyst is reversible; they reveal the unexpected benefits of low-density catalyst loading in facilitating forward charge transfer for desired chemical reactions. It is implied that for practical solar water splitting devices, a suitable catalyst loading is important for maximized performance.

4.
Chem Sci ; 14(24): 6601-6607, 2023 Jun 21.
Artículo en Inglés | MEDLINE | ID: mdl-37350819

RESUMEN

Heterogeneous water oxidation catalysis is central to the development of renewable energy technologies. Recent research has suggested that the reaction mechanisms are sensitive to the hole density at the active sites. However, these previous results were obtained on catalysts of different materials featuring distinct active sites, making it difficult to discriminate between competing explanations. Here, a comparison study based on heterogenized dinuclear Ir catalysts (Ir-DHC), which feature the same type of active site on different supports, is reported. The prototypical reaction was water oxidation triggered by pulsed irradiation of suspensions containing a light sensitizer, Ru(bpy)32+, and a sacrificial electron scavenger, S2O82-. It was found that at relatively low temperatures (288-298 K), the water oxidation activities of Ir-DHC on indium tin oxide (ITO) and CeO2 supports were comparable within the studied range of fluences (62-151 mW cm-2). By contrast, at higher temperatures (310-323 K), Ir-DHC on ITO exhibited a ca. 100% higher water oxidation activity than on CeO2. The divergent activities were attributed to the distinct abilities of the supporting substrates in redistributing holes. The differences were only apparent at relatively high temperatures when hole redistribution to the active site became a limiting factor. These findings highlight the critical role of the supporting substrate in determining the turnover at active sites of heterogeneous catalysts.

5.
J Am Chem Soc ; 145(20): 11415-11419, 2023 May 24.
Artículo en Inglés | MEDLINE | ID: mdl-37172099

RESUMEN

Atomically dispersed catalysts such as single-atom catalysts have been shown to be effective in selectively oxidizing methane, promising a direct synthetic route to value-added oxygenates such as acetic acid or methanol. However, an important challenge of this approach has been that the loading of active sites by single-atom catalysts is low, leading to a low overall yield of the products. Here, we report an approach that can address this issue. It utilizes a metal-organic framework built with porphyrin as the linker, which provides high concentrations of binding sites to support atomically dispersed rhodium. It is shown that up to 5 wt% rhodium loading can be achieved with excellent dispersity. When used for acetic acid synthesis by methane oxidation, a new benchmark performance of 23.62 mmol·gcat-1·h-1 was measured. Furthermore, the catalyst exhibits a unique sensitivity to light, producing acetic acid (under illumination, up to 66.4% selectivity) or methanol (in the dark, up to 65.0% selectivity) under otherwise identical reaction conditions.

6.
J Chem Phys ; 151(16): 160902, 2019 Oct 28.
Artículo en Inglés | MEDLINE | ID: mdl-31675864

RESUMEN

Electrocatalysis is central to the production of renewable fuels and high-value commodity chemicals. The electrolyte and the electrode together determine the catalytic properties of the liquid/solid interface. In particular, the cations of the electrolyte can greatly change the rates and reaction selectivity of many electrocatalytic processes. For this reason, the careful choice of the cation is an essential step in the design of catalytic interfaces with high selectivity for desired high-value products. To make such a judicious choice, it is critical to understand where in the electric double layer the cations reside and the various distinct mechanistic impacts they can have on the electrocatalytic process of interest. In this perspective, we review recent advances in the understanding of the electric double layer with a particular focus on the interfacial distribution of cations and the cations' hydration states in the vicinity of the electrode under various experimental conditions. Furthermore, we summarize the different ways in which cations can alter the rates and selectivity of chemical processes at electrified interfaces and identify possible future areas of research in this field.

7.
Proc Natl Acad Sci U S A ; 116(19): 9220-9229, 2019 05 07.
Artículo en Inglés | MEDLINE | ID: mdl-31004052

RESUMEN

The product selectivity of many heterogeneous electrocatalytic processes is profoundly affected by the liquid side of the electrocatalytic interface. The electrocatalytic reduction of CO to hydrocarbons on Cu electrodes is a prototypical example of such a process. However, probing the interactions of surface-bound intermediates with their liquid reaction environment poses a formidable experimental challenge. As a result, the molecular origins of the dependence of the product selectivity on the characteristics of the electrolyte are still poorly understood. Herein, we examined the chemical and electrostatic interactions of surface-adsorbed CO with its liquid reaction environment. Using a series of quaternary alkyl ammonium cations ([Formula: see text], [Formula: see text], [Formula: see text], and [Formula: see text]), we systematically tuned the properties of this environment. With differential electrochemical mass spectrometry (DEMS), we show that ethylene is produced in the presence of [Formula: see text] and [Formula: see text] cations, whereas this product is not synthesized in [Formula: see text]- and [Formula: see text]-containing electrolytes. Surface-enhanced infrared absorption spectroscopy (SEIRAS) reveals that the cations do not block CO adsorption sites and that the cation-dependent interfacial electric field is too small to account for the observed changes in selectivity. However, SEIRAS shows that an intermolecular interaction between surface-adsorbed CO and interfacial water is disrupted in the presence of the two larger cations. This observation suggests that this interaction promotes the hydrogenation of surface-bound CO to ethylene. Our study provides a critical molecular-level insight into how interactions of surface species with the liquid reaction environment control the selectivity of this complex electrocatalytic process.

8.
ACS Cent Sci ; 4(5): 631-637, 2018 May 23.
Artículo en Inglés | MEDLINE | ID: mdl-29806010

RESUMEN

The inertness of the C-H bond in CH4 poses significant challenges to selective CH4 oxidation, which often proceeds all the way to CO2 once activated. Selective oxidation of CH4 to high-value industrial chemicals such as CO or CH3OH remains a challenge. Presently, the main methods to activate CH4 oxidation include thermochemical, electrochemical, and photocatalytic reactions. Of them, photocatalytic reactions hold great promise for practical applications but have been poorly studied. Existing demonstrations of photocatalytic CH4 oxidation exhibit limited control over the product selectivity, with CO2 as the most common product. The yield of CO or other hydrocarbons is too low to be of any practical value. In this work, we show that highly selective production of CO by CH4 oxidation can be achieved by a photoelectrochemical (PEC) approach. Under our experimental conditions, the highest yield for CO production was 81.9%. The substrate we used was TiO2 grown by atomic layer deposition (ALD), which features high concentrations of Ti3+ species. The selectivity toward CO was found to be highly sensitive to the substrate types, with significantly lower yield on P25 or commercial anatase TiO2 substrates. Moreover, our results revealed that the selectivity toward CO also depends on the applied potentials. Based on the experimental results, we proposed a reaction mechanism that involves synergistic effects by adjacent Ti sites on TiO2. Spectroscopic characterization and computational studies provide critical evidence to support the mechanism. Furthermore, the synergistic effect was found to parallel heterogeneous CO2 reduction mechanisms. Our results not only present a new route to selective CH4 oxidation, but also highlight the importance of mechanistic understandings in advancing heterogeneous catalysis.

9.
Phys Chem Chem Phys ; 19(44): 30166-30172, 2017 Nov 15.
Artículo en Inglés | MEDLINE | ID: mdl-29105707

RESUMEN

The catalytic selectivity and reactivity of an electrocatalytic interface can profoundly depend on the identity of the supporting electrolyte's cation. In the case of CO2 reduction on copper electrodes, these cation effects have been utilized to suppress undesired hydrogen evolution and to promote the formation of C2 reduction products. However, to more effectively steer the catalytic selectivity of the electrolyte/copper interface by cations, it is crucial to reveal the various physical mechanisms by which cations impact the catalytic properties of this prototypical interface for CO2 reduction. Herein, we employ surface-sensitive infrared spectroscopy to probe how alkali cations (Li+, K+, and Cs+) control the coverage of CO, a key intermediate in CO2 reduction, on a polycrystalline copper electrode. We find that surface-adsorbed CO experiences an increasingly larger interfacial electric field with increasing cation size. The reduction of CO is further promoted by the two larger cations, leading to a significant drop of the CO coverage at high cathodic potential around -1 V vs. RHE. Our results demonstrate for the first time that the coverage of CO on the electrode is very sensitive to the identity of the cation. Since the relative coverage of CO and hydrogen on the copper surface affects the catalytic rates of CO2 reduction and hydrogen evolution, our results represent an essential step towards a better understanding of how cation effects control the product distribution.

10.
Nat Chem ; 8(6): 549-55, 2016 06.
Artículo en Inglés | MEDLINE | ID: mdl-27219698

RESUMEN

Although the water oxidation cycle involves the critical step of O-O bond formation, the transition metal oxide radical thought to be the catalytic intermediate for this step has eluded direct observation. The radical represents the transformation of charge into a nascent catalytic intermediate, which lacks a newly formed bond and is therefore inherently difficult to detect. Here, using theoretical calculations and ultrafast in situ infrared spectroscopy of photocatalysis at an n-SrTiO3/aqueous interface, we reveal a subsurface vibration of the oxygen directly below, and uniquely generated by, the oxyl radical (Ti-O(•)). Intriguingly, this interfacial Ti-O stretch vibration, once decoupled from the lattice, couples to reactant dynamics (water librations). These experiments demonstrate subsurface vibrations and their coupling to solvent and electron dynamics to detect nascent catalytic intermediates at the solid-liquid interface at the molecular level. One can envision using the subsurface vibrations and their coupling across the interface to track and control catalysis dynamically.

11.
J Am Chem Soc ; 136(30): 10632-9, 2014 Jul 30.
Artículo en Inglés | MEDLINE | ID: mdl-25029360

RESUMEN

Interfacial hole transfer between n-SrTiO3 and OH(-) was investigated by surface sensitive transient optical spectroscopy of an in situ photoelectrochemical cell during water oxidation. The kinetics reveal a single rate constant with an exponential dependence on the surface hole potential, spanning time scales from 3 ns to 8 ps over a ≈1 V increase. A voltage- and laser illumination-induced process moves the valence band edge at the n-type semiconductor/water interface to continuously change the surface hole potential. This single step of the water oxidation reaction is assigned to the first hole transfer h(+) + OH(-) → OH(•). The kinetics quantify how much a change in the free energy difference driving this first hole transfer reduces the activation barrier. They are also used to extrapolate the kinetic rate due to the activation barrier when that free energy difference is zero, or the Nernstian potential. This is the first time transient spectroscopy has enabled the separation of the first hole transfer from the full four hole transfer cycle and a direct determination of these two quantities. The Nernstian potential for OH(-)/OH(•) is also suggested, in rough agreement with gas-phase studies. The observation of a distinct, much longer time scale upon picosecond hole transfer to OH(-) suggests that a dominant, more stable intermediate of the water oxidation reaction, possibly a surface bound oxo, may result.

12.
Protein Sci ; 21(2): 157-70, 2012 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-22109973

RESUMEN

Although protein folding is a simple outcome of the underlying thermodynamics, arriving at a quantitative and predictive understanding of how proteins fold nevertheless poses huge challenges. Therefore, both advanced experimental and computational methods are continuously being developed and refined to probe and reveal the atomistic details of protein folding dynamics and mechanisms. Herein, we provide a concise review of recent developments in spectroscopic studies of protein folding, with a focus on new triggering and probing methods. In particular, we describe several laser-based techniques for triggering protein folding/unfolding on the picosecond and/or nanosecond timescales and various linear and nonlinear spectroscopic techniques for interrogating protein conformations, conformational transitions, and dynamics.


Asunto(s)
Pliegue de Proteína , Análisis Espectral/métodos , Animales , Compuestos Azo/química , Humanos , Cinética , Rayos Láser , Modelos Lineales , Modelos Moleculares , Conformación Molecular , Dinámicas no Lineales , Proteínas/química , Termodinámica
13.
J Phys Chem Lett ; 2: 2598-2609, 2011 Sep 23.
Artículo en Inglés | MEDLINE | ID: mdl-22003429

RESUMEN

Elucidating the underlying molecular mechanisms of protein folding and function is a very exciting and active research area, but poses significant challenges. This is due in part to the fact that existing experimental techniques are incapable of capturing snapshots along the 'reaction coordinate' in question with both sufficient spatial and temporal resolutions. In this regard, recent years have seen increased interests and efforts in development and employment of site-specific probes to enhance the structural sensitivity of spectroscopic techniques in conformational and dynamical studies of biological molecules. In particular, the spectroscopic and chemical properties of nitriles, thiocyanates, and azides render these groups attractive for the interrogation of complex biochemical constructs and processes. Here, we review their signatures in vibrational, fluorescence and NMR spectra and their utility in the context of elucidating chemical structure and dynamics of protein and DNA molecules.

14.
J Chem Phys ; 134(9): 095104, 2011 Mar 07.
Artículo en Inglés | MEDLINE | ID: mdl-21385002

RESUMEN

The dependence of the melting temperature increase (ΔT(m)) of the protein ubiquitin on the volume fraction (ϕ) of several commonly used macromolecular crowding agents (dextran 6, 40, and 70 and ficoll 70) was quantitatively examined and compared to a recently developed theoretical crowding model, i.e., ΔT(m) ∼ (R(g)∕R(c))(α)φ(α∕3). We found that in the current case this model correctly predicts the power-law dependence of ΔT(m) on φ but significantly overestimates the role of the size (i.e., R(c)) of the crowding agent. In addition, we found that for ubiquitin the exponent α is in the range of 4.1-6.5, suggesting that the relation of α=3∕(3ν-1) is a better choice for estimating α based on the Flory coefficient (ν) of the polypeptide chain. Taken together these findings highlight the importance of improving our knowledge and theoretical treatment of the microcompartmentalization of the commonly used model crowding agents.


Asunto(s)
Temperatura de Transición , Ubiquitina/química , Sustancias Macromoleculares/química , Pliegue de Proteína , Espectroscopía Infrarroja por Transformada de Fourier , Termodinámica
15.
Biochemistry ; 49(35): 7659-64, 2010 Sep 07.
Artículo en Inglés | MEDLINE | ID: mdl-20666415

RESUMEN

The helical hairpin motif plays a key role as a receptor site in DNA binding and protein-protein interactions. Thus, various helical hairpins have recently been developed to assess the factors that control the DNA and/or protein binding affinities of this structural motif and to form synthetic templates for protein and drug design. In addition, several lines of evidence suggest that rapid acquisition of a helical hairpin structure from the unfolded ensemble may guide the rapid formation of helical proteins. Despite its importance as a crucial structural element in protein folding and binding, the folding mechanism of the helical hairpin motif has not been thoroughly studied. Herein, we investigate the structural determinants of the folding kinetics of a naturally occurring helical hairpin (porcine PYY) that is free of disulfide bonds and metal ion-induced cross-links using an infrared temperature-jump technique. It is found that mutations in the turn region predominantly increase the barrier of folding irrespective of the temperature, whereas the effect of mutations that perturb the hydrophobic interactions between the two helices is temperature-dependent. At low temperatures, deletion of hydrophobic side chains is found to predominantly affect the unfolding rate, while the opposite is observed at high temperatures. These results are interpreted in terms of a folding mechanism in which the turn is formed in the transition state and also based on the assumption that cross-strand hydrophobic contacts exist in the thermally unfolded state of PYY.


Asunto(s)
Péptido YY/química , Animales , Dicroismo Circular , Interacciones Hidrofóbicas e Hidrofílicas , Cinética , Péptido YY/metabolismo , Pliegue de Proteína , Estructura Secundaria de Proteína , Sus scrofa , Temperatura
16.
J Phys Chem Lett ; 1(4): 781-786, 2010 Feb 01.
Artículo en Inglés | MEDLINE | ID: mdl-20436926

RESUMEN

The bandwidth of the nitrile (C≡N) stretching vibration of 5-cyanotryptophan shows a significant broadening upon hydration. Thus, it has been proposed to be a useful infrared probe of the local hydration environment of proteins. However, the molecular mechanism underlying this hydration-induced spectral broadening is not known, making interpretation of the experimental results difficult. Herein, we investigate how interactions of water with various sites of 5-cyanoindole, the sidechain of 5-cyanotryptophan, affect its C≡N stretching vibration via a combined electronic structure/molecular dynamics approach. It is found that, besides those interactions with the nitrile group, interactions of water with the indole ring also play a significant role in mediating the C≡N stretching frequency. Thus, this study provides a molecular basis for understanding how hydration affects the C≡N stretching band of 5-cyanotryptophan. In addition, an empirical model, which includes interactions of water with both the nitrile and indole groups, is developed for predicting the C≡N stretching vibrational band via molecular dynamics simulations.

17.
J Am Chem Soc ; 132(16): 5616-8, 2010 Apr 28.
Artículo en Inglés | MEDLINE | ID: mdl-20373737

RESUMEN

Synthetic foldamers consisting of beta-amino acids offer excellent model systems for examining the effect of backbone flexibility on the dynamics of protein folding. Herein, we study the folding-unfolding kinetics of a beta-peptide that folds into a 14-helical structure in water. We find that the T-jump induced relaxation kinetics of this peptide occur on the nanosecond time scale and are noticeably slower than those of alanine-based alpha-helical peptides, and additionally, the relaxation rates show a weaker dependence on temperature. These differences appear to indicate that the folding energy landscapes of these peptides are different. In addition, we find that the amide I' band of this beta-peptide exhibits a sharp feature at approximately 1612 cm(-1), which we believe is a distinct infrared reporter of 14-helix.


Asunto(s)
Rayos Infrarrojos , Péptidos/química , Pliegue de Proteína , Secuencia de Aminoácidos , Benchmarking , Cinética , Rayos Láser , Desnaturalización Proteica , Estructura Secundaria de Proteína , Temperatura , Agua/química
18.
J Mol Biol ; 393(1): 227-36, 2009 Oct 16.
Artículo en Inglés | MEDLINE | ID: mdl-19682997

RESUMEN

Macromolecular crowding is one of the key characteristics of the cellular environment and is therefore intimately coupled to the process of protein folding in vivo. While previous studies have provided invaluable insight into the effect of crowding on the stability and folding rate of protein tertiary structures, very little is known about how crowding affects protein folding dynamics at the secondary structure level. In this study, we examined the thermal stability and folding-unfolding kinetics of three small folding motifs (i.e., a 34-residue alpha-helix, a 34-residue cross-linked helix-turn-helix, and a 16-residue beta-hairpin) in the presence of two commonly used crowding agents, Dextran 70 (200 g/L) and Ficoll 70 (200 g/L). We found that these polymers do not induce any appreciable changes in the folding kinetics of the two helical peptides, which is somewhat surprising as the helix-coil transition kinetics have been shown to depend on viscosity. Also to our surprise and in contrast to what has been observed for larger proteins, we found that crowding leads to an appreciable decrease in the folding rate of the shortest beta-hairpin peptide, indicating that besides the excluded volume effect, other factors also need to be considered when evaluating the net effect of crowding on protein folding kinetics. A model considering both the static and the dynamic effects arising from the presence of the crowding agent is proposed to rationalize these results.


Asunto(s)
Oligopéptidos/química , Oligopéptidos/metabolismo , Pliegue de Proteína , Dicroismo Circular , Cinética , Estabilidad Proteica , Estructura Secundaria de Proteína , Temperatura , Viscosidad
19.
Chem Phys Lett ; 478(4): 249-253, 2009 Sep 01.
Artículo en Inglés | MEDLINE | ID: mdl-20161057

RESUMEN

The nitrile (C≡N) stretching vibration is sensitive to environment, making nitrile-derivatized amino acids an increasingly utilized tool to study various biological processes. Herein, we show that the bandwidth of the C≡N stretching vibration of 5-cyanotryptophan is particularly sensitive to water, rendering it an attractive infrared probe of local hydration status. We confirm the utility of this probe in biological applications by using it to examine how the hydration status of individual tryptophan sidechains of an antimicrobial peptide, indolicidin, changes upon peptide binding to model membranes. Furthermore, we show that p-cyanophenylalanine and 5-cyanotryptophan constitute a useful fluorescence energy transfer pair.

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