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1.
ACS Appl Mater Interfaces ; 16(37): 49673-49686, 2024 Sep 18.
Artículo en Inglés | MEDLINE | ID: mdl-39231373

RESUMEN

In this paper, a multineural network fusion freestyle metasurface on-demand design method is proposed. The on-demand design method involves rapidly generating corresponding metasurface patterns based on the user-defined spectrum. The generated patterns are then input into a simulator to predict their corresponding S-parameter spectrogram, which is subsequently analyzed against the real S-parameter spectrogram to verify whether the generated metasurface patterns meet the desired requirements. The methodology is based on three neural network models: a Wasserstein Generative Adversarial Network model with a U-net architecture (U-WGAN) for inverse structural design, a Variational Autoencoder (VAE) model for compression, and an LSTM + Attention model for forward S-parameter spectrum prediction validation. The U-WGAN is utilized for on-demand reverse structural design, aiming to rapidly discover high-fidelity metasurface patterns that meet specific electromagnetic spectrum responses. The VAE, as a probabilistic generation model, serves as a bridge, mapping input data to latent space and transforming it into latent variable data, providing crucial input for a forward S-parameter spectrum prediction model. The LSTM + Attention network, acting as a forward S-parameter spectrum prediction model, can accurately and efficiently predict the S-parameter spectrum corresponding to the latent variable data and compare it with the real spectrum. In addition, the digits "0" and "1" are used in the design to represent vacuum and metallic materials, respectively, and a 10 × 10 cell array of freestyle metasurface patterns is constructed. The significance of the research method proposed in this paper lies in the following: (1) The freestyle metasurface design significantly expands the possibility of metamaterial design, enabling the creation of diverse metasurface structures that are difficult to achieve with traditional methods. (2) The on-demand design approach can generate high-fidelity metasurface patterns that meet the expected electromagnetic characteristics and responses. (3) The fusion of multiple neural networks demonstrates high flexibility, allowing for the adjustment of network structures and training methods based on specific design requirements and data characteristics, thus better accommodating different design problems and optimization objectives.

2.
Interdiscip Sci ; 16(2): 318-332, 2024 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-38342857

RESUMEN

Since gene regulation is a complex process in which multiple genes act simultaneously, accurately inferring gene regulatory networks (GRNs) is a long-standing challenge in systems biology. Although graph neural networks can formally describe intricate gene expression mechanisms, current GRN inference methods based on graph learning regard only transcription factor (TF)-target gene interactions as pairwise relationships, and cannot model the many-to-many high-order regulatory patterns that prevail among genes. Moreover, these methods often rely on limited prior regulatory knowledge, ignoring the structural information of GRNs in gene expression profiles. Therefore, we propose a multi-view hierarchical hypergraphs GRN (MHHGRN) inference model. Specifically, multiple heterogeneous biological information is integrated to construct multi-view hierarchical hypergraphs of TFs and target genes, using hypergraph convolution networks to model higher order complex regulatory relationships. Meanwhile, the coupled information diffusion mechanism and the cross-domain messaging mechanism facilitate the information sharing between genes to optimise gene embedding representations. Finally, a unique channel attention mechanism is used to adaptively learn feature representations from multiple views for GRN inference. Experimental results show that MHHGRN achieves better results than the baseline methods on the E. coli and S. cerevisiae benchmark datasets of the DREAM5 challenge, and it has excellent cross-species generalization, achieving comparable or better performance on scRNA-seq datasets from five mouse and two human cell lines.


Asunto(s)
Escherichia coli , Redes Reguladoras de Genes , Saccharomyces cerevisiae , Escherichia coli/genética , Saccharomyces cerevisiae/genética , Algoritmos , Factores de Transcripción/genética , Factores de Transcripción/metabolismo , Biología Computacional/métodos , Ratones , Humanos , Animales , Redes Neurales de la Computación
3.
IEEE J Transl Eng Health Med ; 8: 1400310, 2020.
Artículo en Inglés | MEDLINE | ID: mdl-32419989

RESUMEN

Alzheimer's disease (AD) is one of the most common progressive neurodegenerative diseases, and the number of AD patients has increased year after year with the global aging trend. The onset of AD has a long preclinical stage. If doctors can make an initial diagnosis in the mild cognitive impairment (MCI) stage, it is possible to identify and screen those at a high-risk of developing full-blown AD, and thus the number of new AD patients can be reduced. However, there are problems with the medical datasets including AD data, such as insufficient number of samples and different data distributions. Transfer learning, which can effectively solve the problem of distribution discrepancy between training and test data and an insufficient number of target samples, has attracted increasing attention over recent years. In this paper, we propose a multi-source ensemble transfer learning (METL) approach by introducing ensemble learning and our tri-transfer model that uses Tri-Training, which ensures the transferability of source data by the tri-transfer model and high performance through ensemble learning. The experimental results on the benchmark and AD datasets demonstrate that our proposed approach has effective transferability, robustness, and feasibility, and is superior to existing algorithms. Based on METL, we propose an auxiliary diagnosis system for the initial diagnosis of AD, which helps doctors identify patients in the MCI stage as quickly as possible and with high accuracy so that measures can be taken to prevent or delay the occurrence of AD.

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