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1.
J Bacteriol ; 204(3): e0057821, 2022 03 15.
Artículo en Inglés | MEDLINE | ID: mdl-35007154

RESUMEN

The agent largely responsible for initiating dental caries, Streptococcus mutans, produces acetoin dehydrogenase that is encoded by the adh operon. The operon consists of the adhA and B genes (E1 dehydrogenase), adhC (E2 lipoylated transacetylase), adhD (E3 dihydrolipoamide dehydrogenase), and lplA (lipoyl ligase). Evidence is presented that AdhC interacts with SpxA2, a redox-sensitive transcription factor functioning in cell wall and oxidative stress responses. In-frame deletion mutations of adh genes conferred oxygen-dependent sensitivity to slightly alkaline pH (pH 7.2-7.6), within the range of values observed in human saliva. Growth defects were also observed when glucose or sucrose served as major carbon sources. A deletion of the adhC orthologous gene, acoC gene of Streptococcus gordonii, did not result in pH sensitivity or defective growth in glucose and sucrose. The defects observed in adh mutants were partially reversed by addition of pyruvate. Unlike most 2-oxoacid dehydrogenases, the E3 AdhD subunit bears an N-terminal lipoylation domain nearly identical to that of E2 AdhC. Changing the lipoyl domains of AdhC and AdhD by replacing the lipoate attachment residue, lysine to arginine, caused no significant reduction in pH sensitivity but the adhDK43R mutation eliminating the lipoylation site resulted in an observable growth defect in glucose medium. The adh mutations were partially suppressed by a deletion of rex, encoding an NAD+/NADH-sensing transcription factor that represses genes functioning in fermentation. spxA2 adh double mutants show synthetic growth restriction at elevated pH and upon ampicillin treatment. These results suggest a role for Adh in stress management in S. mutans. IMPORTANCE Dental caries is often initiated by Streptococcus mutans, which establishes a biofilm and a low pH environment on tooth enamel surfaces. The current study has uncovered vulnerabilities of S. mutans mutant strains that are unable to produce the enzyme complex, acetoin dehydrogenase (Adh). Such mutants are sensitive to modest increases in pH to 7.2-7.6, within the range of human saliva, while a mutant of a commensal Streptococcal species is resistant. The S. mutans adh strains are also defective in carbohydrate utilization and are hypersensitive to a cell wall-acting antibiotic. The studies suggest that Adh could be a potential target for interfering with S. mutans colonization of the oral environment.


Asunto(s)
Caries Dental , Streptococcus mutans , Acetoina Deshidrogenasa/genética , Acetoina Deshidrogenasa/metabolismo , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Biopelículas , Regulación Bacteriana de la Expresión Génica , Glucosa/metabolismo , Humanos , Operón , Streptococcus mutans/metabolismo , Sacarosa/metabolismo , Factores de Transcripción/metabolismo
2.
J Environ Sci Health B ; 53(7): 476-485, 2018.
Artículo en Inglés | MEDLINE | ID: mdl-29596028

RESUMEN

To investigate the degradation activity of the manganese ABC transporter, vegetative catalase 1 and acetoin dehydrogenase E1 from Bacillus subtilis YB1, the proteins were prokaryotically expressed and purified. Assay results showed that the three enzymes were able to degrade nicosulfuron (2- (4,6-dimethoxypyrimidine-2-pyrimidinylcarbamoylaminosulfonyl) -N,N-dimethylnicotinamide), with vegetative catalase 1 exhibiting the highest activity. To further examine the degradation pathway, the degradation products of the three enzymes and the YB1 strain were detected by liquid chromatography-mass spectrometry(LC-MS). The nicosulfuron degradation products of the three enzymes were consistent with those of the YB1 strain, indicating the presence of two pathways: one due to cleavage of sulfonylurea bridges and ring-opening of 1-(4,6-dimethoxy-pyrimidin-2-yl)-3-(2-methyliminomethanesulfonyl-acetyl)-ureaas the pyrimidine ring, yielding the product; and the another due to cleavage of a sulfonylurea bridge, yielding 4,6-dihydroxy pyrimidine (111 m/z), 2-ylamine -4,6-dimethoxy pyrimidine and ((4-(dimethycarbamoyl)pyridine-2-yl)sulfonyl)carbamic acid as products, which were further degraded to 4,6-dihydroxy pyrimidine and N,N-dimethyl-2-sulfamoyl-isonicotinamide. The above results reveal a major contribution of extracellular enzymes to the degradation of nicosulfuron by the YB1 strain. Our data help in elucidation of the mechanism of nicosulfuron bio-degradation and may facilitate the construction of engineered strains.


Asunto(s)
Bacillus subtilis/metabolismo , Proteínas Bacterianas/metabolismo , Herbicidas/metabolismo , Piridinas/metabolismo , Compuestos de Sulfonilurea/metabolismo , Acetoina Deshidrogenasa/genética , Acetoina Deshidrogenasa/metabolismo , Bacillus subtilis/enzimología , Bacillus subtilis/genética , Proteínas Bacterianas/genética , Biodegradación Ambiental , Catalasa/genética , Catalasa/metabolismo , Proteínas de Transporte de Catión/genética , Proteínas de Transporte de Catión/metabolismo , Cromatografía Liquida , Herbicidas/química , Espectrometría de Masas , Piridinas/química , Compuestos de Sulfonilurea/química
3.
J Biotechnol ; 258: 41-50, 2017 Sep 20.
Artículo en Inglés | MEDLINE | ID: mdl-28793235

RESUMEN

The gene encoding a putative (R,R)-butane-2,3-diol dehydrogenase (bdhA) from Bacillus clausii DSM 8716T was isolated, sequenced and expressed in Escherichia coli. The amino acid sequence of the encoded protein is only distantly related to previously studied enzymes (identity 33-43%) and exhibited some uncharted peculiarities. An N-terminally StrepII-tagged enzyme variant was purified and initially characterized. The isolated enzyme catalyzed the (R)-specific oxidation of (R,R)- and meso-butane-2,3-diol to (R)- and (S)-acetoin with specific activities of 12U/mg and 23U/mg, respectively. Likewise, racemic acetoin was reduced with a specific activity of up to 115U/mg yielding a mixture of (R,R)- and meso-butane-2,3-diol, while the enzyme reduced butane-2,3-dione (Vmax 74U/mg) solely to (R,R)-butane-2,3-diol via (R)-acetoin. For these reactions only activity with the co-substrates NADH/NAD+ was observed. The enzyme accepted a selection of vicinal diketones, α-hydroxy ketones and vicinal diols as alternative substrates. Although the physiological function of the enzyme in B. clausii remains elusive, the data presented herein clearly demonstrates that the encoded enzyme is a genuine (R,R)-butane-2,3-diol dehydrogenase with potential for applications in biocatalysis and sensor development.


Asunto(s)
Oxidorreductasas de Alcohol/metabolismo , Bacillus clausii/genética , Proteínas Bacterianas/metabolismo , Proteínas Recombinantes/metabolismo , Acetoína/metabolismo , Acetoina Deshidrogenasa/genética , Acetoina Deshidrogenasa/metabolismo , Oxidorreductasas de Alcohol/genética , Bacillus clausii/enzimología , Proteínas Bacterianas/genética , Clonación Molecular , Diacetil/metabolismo , Escherichia coli/genética , Cinética , Proteínas Recombinantes/genética , Estereoisomerismo
4.
J Ind Microbiol Biotechnol ; 42(8): 1105-15, 2015 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-26059458

RESUMEN

Klebsiella pneumoniae is a 2,3-butanediol producer, and R-acetoin is an intermediate of 2,3-butanediol production. R-acetoin accumulation and dissimilation in K. pneumoniae was studied here. A budC mutant, which has lost 2,3-butanediol dehydrogenase activity, accumulated high levels of R-acetoin in culture broth. However, after glucose was exhausted, the accumulated R-acetoin could be reused by the cells as a carbon source. Acetoin dehydrogenase enzyme system, encoded by acoABCD, was responsible for R-acetoin dissimilation. acoABCD mutants lost the ability to grow on acetoin as the sole carbon source, and the acetoin accumulated could not be dissimilated. However, in the presence of another carbon source, the acetoin accumulated in broth of acoABCD mutants was converted to 2,3-butanediol. Parameters of R-acetoin production by budC mutants were optimized in batch culture. Aerobic culture and mildly acidic conditions (pH 6-6.5) favored R-acetoin accumulation. At the optimized conditions, in fed-batch fermentation, 62.3 g/L R-acetoin was produced by budC and acoABCD double mutant in 57 h culture, with an optical purity of 98.0 %, and a substrate conversion ratio of 28.7 %.


Asunto(s)
Acetoína/metabolismo , Klebsiella pneumoniae/enzimología , Klebsiella pneumoniae/genética , Acetoina Deshidrogenasa/genética , Acetoina Deshidrogenasa/metabolismo , Técnicas de Cultivo Celular por Lotes , Butileno Glicoles/metabolismo , Carbono/química , Medios de Cultivo/química , Escherichia coli/enzimología , Escherichia coli/genética , Fermentación , Concentración de Iones de Hidrógeno , Plásmidos/genética
5.
Prikl Biokhim Mikrobiol ; 50(1): 39-43, 2014.
Artículo en Inglés | MEDLINE | ID: mdl-25272750

RESUMEN

The nicosulfuron-degrading enzymes from Bacillus subtilis strain YB1 were purified and their genes were cloned. The proteins of bacterial culture filtrate were precipitated with ammonium sulfate or acetone. The extracellular proteins concentrated by acetone were purified from DEAE-Sepharose Fast Flow chromatography. The four protein peaks eluted from DEAE-column were separated and purified by native PAGE. Three components (P1-1, P3-2, P4-3) had nicosulfuron-degrading activity, and component P4-3 degradated 57.5% of this compound. The molecular weights of the components were 33.5, 54.8 and 37.0 kDa, respectively. The amino acid sequences of nicosulfuron-degrading enzymes from B. subtilis YB1 were determined by MALDI-TOF-MS, indicating these enzymes as manganese ABC transporter, vegetative catalase 1 and acetoin dehydrogenase E1, respectively. Using PCR amplification, genes 918, 1428, 1026 bp in size were detected for the enzymes studied.


Asunto(s)
Transportadoras de Casetes de Unión a ATP/aislamiento & purificación , Acetoina Deshidrogenasa/aislamiento & purificación , Bacillus subtilis/química , Proteínas Bacterianas/aislamiento & purificación , Catalasa/aislamiento & purificación , Piridinas/química , Compuestos de Sulfonilurea/química , Transportadoras de Casetes de Unión a ATP/química , Transportadoras de Casetes de Unión a ATP/genética , Acetoina Deshidrogenasa/química , Acetoina Deshidrogenasa/genética , Bacillus subtilis/enzimología , Bacillus subtilis/genética , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Biodegradación Ambiental , Catalasa/química , Catalasa/genética , Cromatografía por Intercambio Iónico , Clonación Molecular , Contaminantes Ambientales/química , Escherichia coli/genética , Escherichia coli/metabolismo , Herbicidas/química , Peso Molecular , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/aislamiento & purificación , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción
6.
Appl Microbiol Biotechnol ; 98(2): 641-50, 2014 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-23568047

RESUMEN

Rhodococcus erythropolis WZ010 was capable of producing optically pure (2S,3S)-2,3-butanediol in alcoholic fermentation. The gene encoding an acetoin(diacetyl) reductase from R. erythropolis WZ010 (ReADR) was cloned, overexpressed in Escherichia coli, and subsequently purified by Ni-affinity chromatography. ReADR in the native form appeared to be a homodimer with a calculated subunit size of 26,864, belonging to the family of the short-chain dehydrogenase/reductases. The enzyme accepted a broad range of substrates including aliphatic and aryl alcohols, aldehydes, and ketones. It exhibited remarkable tolerance to dimethyl sulfoxide (DMSO) and retained 53.6 % of the initial activity after 4 h incubation with 30 % (v/v) DMSO. The enzyme displayed absolute stereospecificity in the reduction of diacetyl to (2S,3S)-2,3-butanediol via (S)-acetoin. The optimal pH and temperature for diacetyl reduction were pH 7.0 and 30 °C, whereas those for (2S,3S)-2,3-butanediol oxidation were pH 9.5 and 25 °C. Under the optimized conditions, the activity of diacetyl reduction was 11.9-fold higher than that of (2S,3S)-2,3-butanediol oxidation. Kinetic parameters of the enzyme showed lower K(m) values and higher catalytic efficiency for diacetyl and NADH in comparison to those for (2S,3S)-2,3-butanediol and NAD⁺, suggesting its physiological role in favor of (2S,3S)-2,3-butanediol formation. Interestingly, the enzyme showed higher catalytic efficiency for (S)-1-phenylethanol oxidation than that for acetophenone reduction. ReADR-catalyzed asymmetric reduction of diacetyl was coupled with stereoselective oxidation of 1-phenylethanol, which simultaneously formed both (2S,3S)-2,3-butanediol and (R)-1-phenylethanol in great conversions and enantiomeric excess values.


Asunto(s)
Acetoina Deshidrogenasa/metabolismo , Butileno Glicoles/metabolismo , Rhodococcus/enzimología , Acetoina Deshidrogenasa/química , Acetoina Deshidrogenasa/genética , Acetoina Deshidrogenasa/aislamiento & purificación , Cromatografía de Afinidad , Clonación Molecular , ADN Bacteriano/química , ADN Bacteriano/genética , Estabilidad de Enzimas , Escherichia coli/genética , Expresión Génica , Concentración de Iones de Hidrógeno , Cinética , Datos de Secuencia Molecular , Peso Molecular , Multimerización de Proteína , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/aislamiento & purificación , Proteínas Recombinantes/metabolismo , Rhodococcus/genética , Análisis de Secuencia de ADN , Estereoisomerismo , Especificidad por Sustrato , Temperatura
7.
Lett Appl Microbiol ; 57(4): 274-81, 2013 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-23701367

RESUMEN

UNLABELLED: S-acetoin (S-AC) is an important four-carbon chiral compound that has unique industrial applications in the asymmetric synthesis of valuable chiral specialty chemicals. However, previous studies showed that the usually low yield and optical purity of S-AC as well as the very high substrate cost have hindered the application of this compound. In the current work, a gene encoding diacetyl reductase (DAR) from a Paenibacillus polymyxa strain ZJ-9 was cloned and expressed in Escherichia coli. Whole cells of the recombinant E. coli were used to produce S-AC from diacetyl (DA). Under optimal conditions, S-AC with high optical purity (purity >99·9%) was obtained with a yield of 13·5 ± 0·24 and 39·4 ± 0·38 g l(-1) under batch and fed-batch culture conditions, respectively. This process featured the biotransformation of DA into S-AC using whole cells of engineered E. coli. The result is a considerable increase in the yield and optical purity of S-AC, which in turn facilitated the practical application of the compound. SIGNIFICANCE AND IMPACT OF THE STUDY: This study demonstrated a highly efficient new method to produce S-acetoin with higher than 99·9% optical purity from diacetyl using whole cells of engineered Escherichia coli. It will therefore decrease the production cost of S-acetoin and highlight its application in asymmetric synthesis of highly valuable chiral compounds.


Asunto(s)
Acetoina Deshidrogenasa/genética , Acetoína/metabolismo , Proteínas Bacterianas/genética , Escherichia coli/genética , Escherichia coli/metabolismo , Paenibacillus/enzimología , Acetoina Deshidrogenasa/metabolismo , Proteínas Bacterianas/metabolismo , Diacetil/metabolismo , Expresión Génica , Ingeniería Genética , Paenibacillus/genética , Transformación Bacteriana
8.
FEBS Lett ; 584(6): 1231-4, 2010 Mar 19.
Artículo en Inglés | MEDLINE | ID: mdl-20171216

RESUMEN

Like many other aerobic archaea, the hyperthermophile Sulfolobus solfataricus possesses a gene cluster encoding components of a putative 2-oxoacid dehydrogenase complex. In the current paper, we have cloned and expressed the first two genes of this cluster and demonstrate that the protein products form an alpha(2)beta(2) hetero-tetramer possessing the catalytic activity characteristic of the first component enzyme of an acetoin dehydrogenase multienzyme complex. This represents the first report of an acetoin multienzyme complex in archaea, and contrasts with the branched-chain 2-oxoacid dehydrogenase complex activities characterised in two other archaea, Thermoplasma acidophilum and Haloferax volcanii.


Asunto(s)
Acetoina Deshidrogenasa/aislamiento & purificación , Complejos Multienzimáticos/aislamiento & purificación , Sulfolobus solfataricus/enzimología , Acetoína/metabolismo , Acetoina Deshidrogenasa/genética , Acetoina Deshidrogenasa/metabolismo , Archaea/química , Archaea/enzimología , Archaea/genética , Secuencia de Bases , Clonación Molecular , Calor , Complejos Multienzimáticos/genética , Complejos Multienzimáticos/metabolismo , Familia de Multigenes , Proteínas Recombinantes/genética , Proteínas Recombinantes/aislamiento & purificación , Proteínas Recombinantes/metabolismo , Especificidad por Sustrato , Sulfolobus solfataricus/química , Sulfolobus solfataricus/genética , Termodinámica
9.
Lett Appl Microbiol ; 39(6): 533-7, 2004.
Artículo en Inglés | MEDLINE | ID: mdl-15548307

RESUMEN

AIMS: A metabolic pathway for L-2,3-butanediol (BD) as the main product has not yet been found. To rectify this situation, we attempted to produce L-BD from diacetyl (DA) by producing simultaneous expression of diacetyl reductase (DAR) and L-2,3-butanediol dehydrogenase (BDH) using transgenic bacteria, Escherichia coli JM109/pBUD-comb. METHODS AND RESULTS: The meso-BDH of Klebsiella pneumoniae was used for its DAR activity to convert DA to L-acetoin (AC) and the L-BDH of Brevibacterium saccharolyticum was used to reduce L-AC to L-BD. The respective gene coding each enzyme was connected in tandem to the MCS of pFLAG-CTC (pBUD-comb). The divided addition of DA as a source, addition of 2% glucose, and the combination of static and shaking culture was effective for the production. CONCLUSIONS: L-BD (2200 mg l(-1)) was generated from 3000 mg l(-1) added of DA, which corresponded to a 73% conversion rate. Meso-BD as a by-product was mixed by 2% at most. SIGNIFICANCE AND IMPACT OF THE STUDY: An enzyme system for converting DA to L-BD was constructed with a view to using DA-producing bacteria in the future.


Asunto(s)
Butileno Glicoles/metabolismo , Escherichia coli/genética , Escherichia coli/metabolismo , Acetoina Deshidrogenasa/genética , Acetoina Deshidrogenasa/metabolismo , Oxidorreductasas de Alcohol/genética , Oxidorreductasas de Alcohol/metabolismo , Proteínas Bacterianas/genética , Brevibacterium/enzimología , Brevibacterium/genética , Clonación Molecular , Diacetil/metabolismo , Fermentación , Vectores Genéticos , Cinética , Klebsiella pneumoniae/enzimología , Klebsiella pneumoniae/genética , Plásmidos , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Estereoisomerismo
10.
Appl Environ Microbiol ; 69(1): 304-11, 2003 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-12514009

RESUMEN

A plasmid-borne diacetyl (acetoin) reductase (butA) from Leuconostoc pseudomesenteroides CHCC2114 was sequenced and cloned. Nucleotide sequence analysis revealed an open reading frame encoding a protein of 257 amino acids which had high identity at the amino acid level to diacetyl (acetoin) reductases reported previously. Downstream of the butA gene of L. pseudomesenteroides, but coding in the opposite orientation, a putative DNA recombinase was identified. A two-step PCR approach was used to construct FPR02, a butA mutant of the wild-type strain, CHCC2114. FPR02 had significantly reduced diacetyl (acetoin) reductase activity with NADH as coenzyme, but not with NADPH as coenzyme, suggesting the presence of another diacetyl (acetoin)-reducing activity in L. pseudomesenteroides. Plasmid-curing experiments demonstrated that the butA gene is carried on a 20-kb plasmid in L. pseudomesenteroides.


Asunto(s)
Acetoina Deshidrogenasa/genética , Acetoina Deshidrogenasa/metabolismo , Leuconostoc/enzimología , Plásmidos/genética , Clonación Molecular , Escherichia coli/enzimología , Escherichia coli/genética , Eliminación de Gen , Leuconostoc/genética , Datos de Secuencia Molecular , Análisis de Secuencia de ADN
11.
Chem Biol Interact ; 130-132(1-3): 879-89, 2001 Jan 30.
Artículo en Inglés | MEDLINE | ID: mdl-11306103

RESUMEN

Using rapid amplification of cDNA ends PCR, a cDNA species for diacetyl reductase (EC 1.1.1.5) was isolated from hamster liver. The encoded protein consisted of 244 amino acids, and showed high sequence identity to mouse lung carbonyl reductase and hamster sperm P26h protein, which belong to the short-chain dehydrogenase/reductase family. The enzyme efficiently reduced L-xylulose as well as diacetyl, and slowly oxidized xylitol. The K(m) values for L-xylulose and xylitol were similar to those reported for L-xylulose reductase (EC 1.1.1.10) of guinea pig liver. The identity of diacetyl reductase with L-xylulose reductase was demonstrated by co-purification of the two enzyme activities from hamster liver and their proportional distribution in other tissues.


Asunto(s)
Acetoina Deshidrogenasa/genética , Acetoina Deshidrogenasa/metabolismo , Deshidrogenasas del Alcohol de Azúcar/genética , Deshidrogenasas del Alcohol de Azúcar/metabolismo , Acetoina Deshidrogenasa/aislamiento & purificación , Secuencia de Aminoácidos , Animales , Clonación Molecular , Cricetinae , ADN Complementario/genética , Expresión Génica , Cobayas , Técnicas In Vitro , Cinética , Hígado/enzimología , Pulmón/enzimología , Masculino , Datos de Secuencia Molecular , ARN Mensajero/genética , ARN Mensajero/metabolismo , Conejos , Técnica del ADN Polimorfo Amplificado Aleatorio , Proteínas Recombinantes/genética , Proteínas Recombinantes/aislamiento & purificación , Proteínas Recombinantes/metabolismo , Homología de Secuencia de Aminoácido , Espermatozoides/enzimología , Especificidad por Sustrato , Deshidrogenasas del Alcohol de Azúcar/aislamiento & purificación , Distribución Tisular
12.
J Bacteriol ; 183(8): 2497-504, 2001 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-11274109

RESUMEN

Bacillus subtilis grown in media containing amino acids or glucose secretes acetate, pyruvate, and large quantities of acetoin into the growth medium. Acetoin can be reused by the bacteria during stationary phase when other carbon sources have been depleted. The acoABCL operon encodes the E1alpha, E1beta, E2, and E3 subunits of the acetoin dehydrogenase complex in B. subtilis. Expression of this operon is induced by acetoin and repressed by glucose in the growth medium. The acoR gene is located downstream from the acoABCL operon and encodes a positive regulator which stimulates the transcription of the operon. The product of acoR has similarities to transcriptional activators of sigma 54-dependent promoters. The four genes of the operon are transcribed from a -12, -24 promoter, and transcription is abolished in acoR and sigL mutants. Deletion analysis showed that DNA sequences more than 85 bp upstream from the transcriptional start site are necessary for full induction of the operon. These upstream activating sequences are probably the targets of AcoR. Analysis of an acoR'-'lacZ strain of B. subtilis showed that the expression of acoR is not induced by acetoin and is repressed by the presence of glucose in the growth medium. Transcription of acoR is also negatively controlled by CcpA, a global regulator of carbon catabolite repression. A specific interaction of CcpA in the upstream region of acoR was demonstrated by DNase I footprinting experiments, suggesting that repression of transcription of acoR is mediated by the binding of CcpA to the promoter region of acoR.


Asunto(s)
Acetoina Deshidrogenasa/genética , Acetoína/metabolismo , Bacillus subtilis/genética , Proteínas Bacterianas , Regulación Bacteriana de la Expresión Génica , Factor sigma/metabolismo , Acetoina Deshidrogenasa/metabolismo , Bacillus subtilis/crecimiento & desarrollo , Bacillus subtilis/metabolismo , Secuencia de Bases , Medios de Cultivo , Huella de ADN , Proteínas de Unión al ADN/genética , Proteínas de Unión al ADN/metabolismo , Glucosa/metabolismo , Datos de Secuencia Molecular , Operón , Plásmidos , Regiones Promotoras Genéticas , Proteínas Represoras/genética , Proteínas Represoras/metabolismo , Factor sigma/genética , Factores de Transcripción/genética , Factores de Transcripción/metabolismo
13.
J Bacteriol ; 181(12): 3837-41, 1999 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-10368162

RESUMEN

A recent study indicated that Bacillus subtilis catabolizes acetoin by enzymes encoded by the acu gene cluster (F. J. Grundy, D. A. Waters, T. Y. Takova, and T. M. Henkin, Mol. Microbiol. 10:259-271, 1993) that are completely different from those in the multicomponent acetoin dehydrogenase enzyme system (AoDH ES) encoded by aco gene clusters found before in all other bacteria capable of utilizing acetoin as the sole carbon source for growth. By hybridization with a DNA probe covering acoA and acoB of the AoDH ES from Clostridium magnum, genomic fragments from B. subtilis harboring acoA, acoB, acoC, acoL, and acoR homologous genes were identified, and some of them were functionally expressed in E. coli. Furthermore, acoA was inactivated in B. subtilis by disruptive mutagenesis; these mutants were impaired to express PPi-dependent AoDH E1 activity to remove acetoin from the medium and to grow with acetoin as the carbon source. Therefore, acetoin is catabolized in B. subtilis by the same mechanism as all other bacteria investigated so far, leaving the function of the previously described acu genes obscure.


Asunto(s)
Acetoína/metabolismo , Bacillus subtilis/genética , Bacillus subtilis/metabolismo , Familia de Multigenes , Acetoina Deshidrogenasa/genética , Acetoina Deshidrogenasa/metabolismo , Cromosomas Bacterianos , Escherichia coli/genética , Biblioteca de Genes , Cinética , Mutación , Sistemas de Lectura Abierta , Mapeo Restrictivo
14.
J Bacteriol ; 179(5): 1497-504, 1997 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-9045805

RESUMEN

By using transposon insertional mutagenesis and deletion analyses, a recombinant clone containing the region upstream of the acoABCD operon of Klebsiella pneumoniae was found to be required for acetoin-inducible expression of the operon in Escherichia coli. The nucleotide sequence of the region was determined, and it displayed an open reading frame of 2,763 bp that is transcribed divergently to the acoABCD operon. This gene, designated acoK, is capable of encoding a protein with an overall 58.4% amino acid identity with MalT, the transcriptional activator of the E. coli maltose regulon. A conserved sequence for nucleotide binding at the N-terminal region, as well as a helix-turn-helix motif belonging to the LuxR family of transcriptional regulators at the C terminus, was also identified. Primer extension analysis identified two transcription initiation sites, S1 and S2, located 319 and 267 bp, respectively, upstream of the putative start codon of acoK. Several copies of NtrC recognition sequence [CAC-(N11 to N18)-GTG] were found in the promoter regions of both the acoK gene and the acoABCD operon. Acetoin-dependent expression of the acoABCD operon could be restored in the E. coli acoK mutants by supplying a plasmid carrying an intact acoK, suggesting a transactivating function of the gene product. The AcoK protein overproduced in E. coli was approximately 100 kDa, which is in good agreement with the molecular mass deduced from the nucleotide sequence. A specific DNA binding property and an ATPase activity of the purified AcoK were also demonstrated.


Asunto(s)
Acetoina Deshidrogenasa/genética , Proteínas Bacterianas , Proteínas de Unión al ADN , Genes Reguladores , Klebsiella pneumoniae/genética , Operón , Transactivadores/genética , Acetoína/metabolismo , Acetoína/farmacología , Acetoina Deshidrogenasa/biosíntesis , Adenosina Trifosfatasas/metabolismo , Adenosina Trifosfato/metabolismo , Secuencia de Aminoácidos , Secuencia de Bases , ADN Bacteriano/metabolismo , Escherichia coli/genética , Regulación Bacteriana de la Expresión Génica , Genes Bacterianos , Secuencias Hélice-Giro-Hélice , Klebsiella pneumoniae/enzimología , Datos de Secuencia Molecular , Mutagénesis Insercional , ARN Bacteriano/genética , ARN Mensajero/genética , Transactivadores/química , Transactivadores/metabolismo
15.
Microbiology (Reading) ; 142 ( Pt 11): 3057-65, 1996 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-8969503

RESUMEN

In the framework of the international project aimed at the sequencing of the Bacillus subtilis genome, a 40.6 kb chromosome segment, which contains the tre locus, has been cloned and sequenced. This region (40 601 bp; 73 degrees-76 degrees on the genetic map) contains 38 complete ORFs and one partial one. Three ORFs, the closest to the hsdC locus, correspond to the treP, treA and treR genes encoding enzyme IITre, trehalose-6-phosphate hydrolase and the repressor of the tre operon, respectively. A homology search for the products deduced from the 39 ORFs revealed that 23 exhibit significant similarity to known proteins, e.g. proteins involved in acetoin utilization, deoxyribonuclease, methyladenine glycosidase, hydroxyisobutyrate dehydrogenase, multidrug resistance proteins, protein phosphatase, cyclic-nucleotide phosphodiesterase, 5'-nucleotidase and NADP(H)-flavin oxidoreductase. Based on the gene organization and the results of the homology search, it is predicted that YfjG, YfjH, YfjI, YfjJ and YfjK form an acetoin dehydrogenase system (acetoin regulatory protein, and acetoin dehydrogenase components/subunits E3, E2, E1 beta and E1 alpha respectively). yfkN, an extremely large ORF comprising 4386 nucleotides, seems to correspond to the fusion of the genes for 2',3'-cyclic-nucleotide 2'-phosphodiesterase and 5'-nucleotidase precursor.


Asunto(s)
Acetoína/metabolismo , Bacillus subtilis/genética , Bacillus subtilis/metabolismo , Cromosomas Bacterianos/genética , Genes Bacterianos , Trehalosa/metabolismo , Acetoina Deshidrogenasa/genética , Proteínas Bacterianas/genética , Secuencia de Bases , Mapeo Cromosómico , Clonación Molecular , Secuencia de Consenso , Cartilla de ADN/genética , ADN Bacteriano/genética , Genoma Bacteriano , Datos de Secuencia Molecular , Sistemas de Lectura Abierta , Análisis de Secuencia de ADN , Homología de Secuencia de Aminoácido
16.
J Bacteriol ; 176(12): 3614-30, 1994 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-8206840

RESUMEN

E2 (dihydrolipoamide acetyltransferase) and E3 (dihydrolipoamide dehydrogenase) of the Clostridium magnum acetoin dehydrogenase enzyme system were copurified in a three-step procedure from acetoin-grown cells. The denatured E2-E3 preparation comprised two polypeptides with M(r)s of 49,000 and 67,000, respectively. Microsequencing of both proteins revealed identical amino acid sequences. By use of oligonucleotide probes based on the N-terminal sequences of the alpha and beta subunits of E1 (acetoin dehydrogenase, thymine PPi dependent), which were purified recently (H. Lorenzl, F.B. Oppermann, B. Schmidt, and A. Steinbüchel, Antonie van Leeuwenhoek 63:219-225, 1993), and of E2-E3, structural genes acoA (encoding E1 alpha), acoB (encoding E1 beta), acoC (encoding E2), and acoL (encoding E3) were identified on a single ClaI restriction fragment and expressed in Escherichia coli. The nucleotide sequences of acoA (978 bp), acoB (999 bp), acoC (1,332 bp), and acoL (1,734 bp), as well as those of acoX (996 bp) and acoR (1,956 bp), were determined. The amino acid sequences deduced from acoA, acoB, acoC, and acoL for E1 alpha (M(r), 35,532), E1 beta (M(r), 35,541), E2 (M(r), 48,149), and E3 (M(r), 61,255) exhibited striking similarities to the amino acid sequences of the corresponding components of the Pelobacter carbinolicus acetoin dehydrogenase enzyme system and the Alcaligenes eutrophus acetoin-cleaving system, respectively. Significant homologies to the enzyme components of various 2-oxo acid dehydrogenase complexes were also found, indicating a close relationship between the two enzyme systems. As a result of the partial repetition of the 5' coding region of acoC into the corresponding part of acoL, the E3 component of the C. magnum acetoin dehydrogenase enzyme system contains an N-terminal lipoyl domain, which is unique among dihydrolipoamide dehydrogenases. We found strong similarities between the AcoR and AcoX sequences and the A. eutrophus acoR gene product, which is a regulatory protein required for expression of the A. eutrophus aco genes, and the A. eutrophus acoX gene product, which has an unknown function, respectively. The aco genes of C. magnum are probably organized in one single operon (acoABXCL); acoR maps upstream of this operon.


Asunto(s)
Acetoina Deshidrogenasa/genética , Acetiltransferasas/genética , Proteínas Bacterianas , Clostridium/genética , Proteínas de Unión al ADN , Dihidrolipoamida Deshidrogenasa/genética , Genes Bacterianos/genética , Complejo Piruvato Deshidrogenasa , Acetoina Deshidrogenasa/aislamiento & purificación , Acetiltransferasas/aislamiento & purificación , Secuencia de Aminoácidos , Secuencia de Bases , Clostridium/enzimología , Dihidrolipoamida Deshidrogenasa/aislamiento & purificación , Acetiltransferasa de Residuos Dihidrolipoil-Lisina , Flavinas/análisis , Regulación Bacteriana de la Expresión Génica , Modelos Genéticos , Datos de Secuencia Molecular , Complejos Multienzimáticos/genética , Familia de Multigenes/genética , Conformación Proteica , Análisis de Secuencia , Homología de Secuencia de Aminoácido , Factores de Transcripción/genética , Transcripción Genética
17.
J Bacteriol ; 176(2): 469-85, 1994 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-8110297

RESUMEN

Use of oligonucleotide probes, which were deduced from the N-terminal sequences of the purified enzyme components, identified the structural genes for the alpha and beta subunits of E1 (acetoin:2,6-dichlorophenolindophenol oxidoreductase), E2 (dihydrolipoamide acetyltransferase), and E3 (dihydrolipoamide dehydrogenase) of the Pelobacter carbinolicus acetoin dehydrogenase enzyme system, which were designated acoA, acoB, acoC, and acoL, respectively. The nucleotide sequences of acoA (979 bp), acoB (1,014 bp), acoC (1,353 bp), and acoL (1,413 bp) as well as of acoS (933 bp), which encodes a protein with an M(r) of 34,421 exhibiting 64.7% amino acid identity to the Escherichia coli lipA gene product, were determined. These genes are clustered on a 6.1-kbp region. Heterologous expression of acoA, acoB, acoC, acoL, and acoS in E. coli was demonstrated. The amino acid sequences deduced from acoA, acoB, acoC, and acoL for E1 alpha (M(r), 34,854), E1 beta (M(r), 36,184), E2 (M(r), 47,281), and E3 (M(r), 49,394) exhibited striking similarities to the amino acid sequences of the components of the Alcaligenes eutrophus acetoin-cleaving system. Homologies of up to 48.7% amino acid identity to the primary structures of the enzyme components of various 2-oxo acid dehydrogenase complexes also were found. In addition, the respective genes of the 2-oxo acid dehydrogenase complexes and of the acetoin dehydrogenase enzyme system were organized very similarly, indicating a close relationship of the P. carbinolicus acetoin dehydrogenase enzyme system to 2-oxo acid dehydrogenase complexes.


Asunto(s)
Acetoina Deshidrogenasa/genética , Acetiltransferasas/genética , Bacterias Anaerobias/genética , Dihidrolipoamida Deshidrogenasa/genética , Complejos Multienzimáticos/genética , Oxidorreductasas/genética , Complejo Piruvato Deshidrogenasa , Sulfurtransferasas , Acetoina Deshidrogenasa/biosíntesis , Acetiltransferasas/biosíntesis , Secuencia de Aminoácidos , Proteínas Bacterianas/genética , Secuencia de Bases , Dihidrolipoamida Deshidrogenasa/biosíntesis , Acetiltransferasa de Residuos Dihidrolipoil-Lisina , Escherichia coli/genética , Genes Bacterianos/genética , Datos de Secuencia Molecular , Complejos Multienzimáticos/biosíntesis , Oxidorreductasas/biosíntesis , Proteínas Recombinantes/biosíntesis , Secuencias Reguladoras de Ácidos Nucleicos/genética , Análisis de Secuencia de ADN , Homología de Secuencia de Aminoácido , Transcripción Genética
18.
Acta Microbiol Pol ; 27(4): 353-8, 1978.
Artículo en Inglés | MEDLINE | ID: mdl-86283

RESUMEN

Three strains of Streptococcus lactis subsp. diacetylactis, namely DRC-1, DRC-2 and DRC-3 which produced diacetyl up to 120 h of incubation were exposed to the ultraviolet irradiation as well as N-methyl-N'-nitro-N-nitrosoguanidine (NTG) to isolate mutants lacking diacetyl reductase activity. UV irradiation did not produce any isolate completely devoid of diacetyl reductase activity, though, 99.5% loss in activity could be achieved. NTG treatment proved to be more effective and seven survivors exhibiting complete loss of diacetyl reductase activity were recovered. These altered characteristics were retained on repeated subculturing.


Asunto(s)
Acetoina Deshidrogenasa/genética , Oxidorreductasas de Alcohol/genética , Lactococcus lactis/genética , Mutación , Acetoina Deshidrogenasa/metabolismo , Sistema Libre de Células , Diacetil/metabolismo , Lactococcus lactis/efectos de los fármacos , Lactococcus lactis/efectos de la radiación , Metilnitronitrosoguanidina/farmacología , Rayos Ultravioleta
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