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1.
Int J Mol Sci ; 22(12)2021 Jun 15.
Artículo en Inglés | MEDLINE | ID: mdl-34203823

RESUMEN

There are two main types of bacterial photosynthesis: oxygenic (cyanobacteria) and anoxygenic (sulfur and non-sulfur phototrophs). Molecular mechanisms of photosynthesis in the phototrophic microorganisms can differ and depend on their location and pigments in the cells. This paper describes bacteria capable of molecular oxidizing hydrogen sulfide, specifically the families Chromatiaceae and Chlorobiaceae, also known as purple and green sulfur bacteria in the process of anoxygenic photosynthesis. Further, it analyzes certain important physiological processes, especially those which are characteristic for these bacterial families. Primarily, the molecular metabolism of sulfur, which oxidizes hydrogen sulfide to elementary molecular sulfur, as well as photosynthetic processes taking place inside of cells are presented. Particular attention is paid to the description of the molecular structure of the photosynthetic apparatus in these two families of phototrophs. Moreover, some of their molecular biotechnological perspectives are discussed.


Asunto(s)
Chlorobi/genética , Chlorobi/fisiología , Chromatiaceae/genética , Chromatiaceae/fisiología , Procesos Fototróficos/genética , Anaerobiosis , Chlorobi/clasificación , Chromatiaceae/clasificación , Filogenia , Azufre/metabolismo
2.
Can J Microbiol ; 67(4): 332-341, 2021 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-33136441

RESUMEN

Hot Lake is a small heliothermal and hypersaline lake in far north-central Washington State (USA) and is limnologically unusual because MgSO4 rather than NaCl is the dominant salt. In late summer, the Hot Lake metalimnion becomes distinctly green from blooms of planktonic phototrophs. In a study undertaken over 60 years ago, these blooms were predicted to include green sulfur bacteria, but no cultures were obtained. We sampled Hot Lake and established enrichment cultures for phototrophic sulfur bacteria in MgSO4-rich sulfidic media. Most enrichments turned green or red within 2 weeks, and from green-colored enrichments, pure cultures of a lobed green sulfur bacterium (phylum Chlorobi) were isolated. Phylogenetic analyses showed the organism to be a species of the prosthecate green sulfur bacterium Prosthecochloris. Cultures of this Hot Lake phototroph were halophilic and tolerated high levels of sulfide and MgSO4. In addition, unlike all recognized species of Prosthecochloris, the Hot Lake isolates grew at temperatures up to 45 °C, indicating an adaptation to the warm summer temperatures of the lake. Photoautotrophy by Hot Lake green sulfur bacteria may contribute dissolved organic matter to anoxic zones of the lake, and their diazotrophic capacity may provide a key source of bioavailable nitrogen, as well.


Asunto(s)
Chlorobi/aislamiento & purificación , Chlorobi/fisiología , Lagos/microbiología , Chlorobi/clasificación , Calor , Lagos/química , Sulfato de Magnesio/análisis , Sulfato de Magnesio/metabolismo , Fijación del Nitrógeno , Procesos Fototróficos , Filogenia , Estaciones del Año , Sulfuros/análisis , Sulfuros/metabolismo , Washingtón
3.
Acta Crystallogr F Struct Biol Commun ; 75(Pt 3): 171-175, 2019 Mar 01.
Artículo en Inglés | MEDLINE | ID: mdl-30839291

RESUMEN

The Fenna-Matthews-Olson protein from Prosthecochloris aestuarii (PaFMO) has been crystallized in a new form that is amenable to high-resolution X-ray and neutron analysis. The crystals belonged to space group H3, with unit-cell parameters a = b = 83.64, c = 294.78 Å, and diffracted X-rays to ∼1.7 Šresolution at room temperature. Large PaFMO crystals grown to volumes of 0.3-0.5 mm3 diffracted neutrons to 2.2 Šresolution on the MaNDi neutron diffractometer at the Spallation Neutron Source. The resolution of the neutron data will allow direct determination of the positions of H atoms in the structure, which are believed to be fundamentally important in tuning the individual excitation energies of bacteriochlorophylls in this archetypal photosynthetic antenna complex. This is one of the largest unit-cell systems yet studied using neutron diffraction, and will allow the first high-resolution neutron analysis of a photosynthetic antenna complex.


Asunto(s)
Chlorobi/química , Complejos de Proteína Captadores de Luz/química , Difracción de Neutrones/métodos , Fotosíntesis , Difracción de Rayos X/métodos , Chlorobi/fisiología , Conformación Proteica
4.
Biochim Biophys Acta Bioenerg ; 1860(2): 147-154, 2019 02 01.
Artículo en Inglés | MEDLINE | ID: mdl-30537470

RESUMEN

During the millions of years of evolution, photosynthetic organisms have adapted to almost all terrestrial and aquatic habitats, although some environments are obviously more suitable for photosynthesis than others. Photosynthetic organisms living in low-light conditions require on the one hand a large light-harvesting apparatus to absorb as many photons as possible. On the other hand, the excitation trapping time scales with the size of the light-harvesting system, and the longer the distance over which the formed excitations have to be transferred, the larger the probability to lose excitations. Therefore a compromise between photon capture efficiency and excitation trapping efficiency needs to be found. Here we report results on the whole cells of the green sulfur bacterium Chlorobaculum tepidum. Its efficiency of excitation energy transfer and charge separation enables the organism to live in environments with very low illumination. Using fluorescence measurements with picosecond resolution, we estimate that despite a rather large size and complex composition of its light-harvesting apparatus, the quantum efficiency of its photochemistry is around ~87% at 20 °C, ~83% at 45 °C, and about ~81% at 77 K when part of the excitation energy is trapped by low-energy bacteriochlorophyll a molecules. The data are evaluated using target analysis, which provides further insight into the functional organization of the low-light adapted photosynthetic apparatus.


Asunto(s)
Chlorobi/fisiología , Transferencia de Energía/fisiología , Fotoquímica , Fotosíntesis , Adaptación Fisiológica , Bacterioclorofila A/fisiología , Fluorescencia , Fluorometría/métodos , Complejos de Proteína Captadores de Luz/metabolismo
5.
PLoS One ; 12(12): e0189510, 2017.
Artículo en Inglés | MEDLINE | ID: mdl-29245157

RESUMEN

The meromictic Lake Cadagno is characterized by a compact chemocline with high concentrations of anoxygenic phototrophic purple sulfur bacteria (PSB) and green sulfur bacteria (GSB). The co-occurrence of phylogenetically distant bacterial groups such as PSB and GSB in the same ecological niche, makes the chemocline of Lake Cadagno an ideal system for studying the conditions and consequences of coexistence of photosynthetic bacteria populations. In this study, we applied flow cytometry (FCM) as a fast tool to identify metabolic changes due to the production and consumption of inclusion bodies such as sulfur globules (SGBs), and follow population dynamics of closely related anoxygenic photosynthetic sulfur bacteria in their natural environment. Large-celled PSB Chromatium okenii and GSB Chlorobium populations were reliably separated and identified due to differences in auto-fluorescence and cell size. Moreover, we showed that these dominant taxa share the same ecological niche over seasonal periods. Taking advantage of FCM detection of dynamic cellular complexity variation during phases of photosynthetic activity, we identified an unexpected alternation in PSB versus GSB metabolic activity, indicating dynamic interspecific interactions between these two populations.


Asunto(s)
Chlorobi/fisiología , Chromatiaceae/fisiología , Microbiología del Agua , Anaerobiosis , ADN Bacteriano/metabolismo , Lagos/análisis , Lagos/microbiología , Oxidación-Reducción , Fotosíntesis , ARN Bacteriano/metabolismo , Estaciones del Año , Sulfuros/análisis , Sulfuros/metabolismo , Suiza
6.
Sci Rep ; 7(1): 9320, 2017 08 24.
Artículo en Inglés | MEDLINE | ID: mdl-28839161

RESUMEN

Coral reefs are ecologically significant habitats. Coral-algal symbiosis confers ecological success on coral reefs and coral-microbial symbiosis is also vital to coral reefs. However, current understanding of coral-microbial symbiosis on a genomic scale is largely unknown. Here we report a potential microbial symbiont in corals revealed by metagenomics-based genomic study. Microbial cells in coral were enriched for metagenomic analysis and a high-quality draft genome of "Candidatus Prosthecochloris korallensis" was recovered by metagenome assembly and genome binning. Phylogenetic analysis shows "Ca. P. korallensis" belongs to the Prosthecochloris clade and is clustered with two Prosthecochloris clones derived from Caribbean corals. Genomic analysis reveals "Ca. P. korallensis" has potentially important ecological functions including anoxygenic photosynthesis, carbon fixation via the reductive tricarboxylic acid (rTCA) cycle, nitrogen fixation, and sulfur oxidization. Core metabolic pathway analysis suggests "Ca. P. korallensis" is a green sulfur bacterium capable of photoautotrophy or mixotrophy. Potential host-microbial interaction reveals a symbiotic relationship: "Ca. P. korallensis" might provide organic and nitrogenous nutrients to its host and detoxify sulfide for the host; the host might provide "Ca. P. korallensis" with an anaerobic environment for survival, carbon dioxide and acetate for growth, and hydrogen sulfide as an electron donor for photosynthesis.


Asunto(s)
Antozoos/microbiología , Chlorobi/clasificación , Chlorobi/fisiología , Simbiosis , Animales , Región del Caribe , Chlorobi/genética , Análisis por Conglomerados , Biología Computacional , Redes y Vías Metabólicas/genética , Metagenómica , Filogenia , Secuenciación Completa del Genoma
7.
Sci Rep ; 7: 45245, 2017 03 27.
Artículo en Inglés | MEDLINE | ID: mdl-28345621

RESUMEN

Advances in time resolved spectroscopy have provided new insight into the energy transmission in natural photosynthetic complexes. Novel theoretical tools and models are being developed in order to explain the experimental results. We provide a model calculation for the two-dimensional electronic spectra of Cholorobaculum tepidum which correctly describes the main features and transfer time scales found in recent experiments. From our calculation one can infer the coupling of the antenna chlorosome with the environment and the coupling between the chlorosome and the Fenna-Matthews-Olson complex. We show that environment assisted transport between the subunits is the required mechanism to reproduce the experimental two-dimensional electronic spectra.


Asunto(s)
Chlorobi/fisiología , Fotosíntesis , Chlorobi/metabolismo , Modelos Moleculares , Modelos Teóricos
8.
PLoS One ; 11(2): e0148988, 2016.
Artículo en Inglés | MEDLINE | ID: mdl-26882089

RESUMEN

The aim of this study was first to identify lysozymes paralogs in the deep sea mussel Bathymodiolus azoricus then to measure their relative expression or activity in different tissue or conditions. B. azoricus is a bivalve that lives close to hydrothermal chimney in the Mid-Atlantic Ridge (MAR). They harbour in specialized gill cells two types of endosymbiont (gram-bacteria): sulphide oxidizing bacteria (SOX) and methanotrophic bacteria (MOX). This association is thought to be ruled by specific mechanism or actors of regulation to deal with the presence of symbiont but these mechanisms are still poorly understood. Here, we focused on the implication of lysozyme, a bactericidal enzyme, in this endosymbiosis. The relative expression of Ba-lysozymes paralogs and the global anti-microbial activity, were measured in natural population (Lucky Strike--1700 m, Mid-Atlantic Ridge), and in in situ experimental conditions. B. azoricus individuals were moved away from the hydrothermal fluid to induce a loss of symbiont. Then after 6 days some mussels were brought back to the mussel bed to induce a re-acquisition of symbiotic bacteria. Results show the presence of 6 paralogs in B. azoricus. In absence of symbionts, 3 paralogs are up-regulated while others are not differentially expressed. Moreover the global activity of lysozyme is increasing with the loss of symbiont. All together these results suggest that lysozyme may play a crucial role in symbiont regulation.


Asunto(s)
Proteínas Bacterianas/metabolismo , Bivalvos/fisiología , Chlorobi/fisiología , Bacterias Gramnegativas/fisiología , Methylococcaceae/fisiología , Muramidasa/metabolismo , Secuencia de Aminoácidos , Animales , Proteínas Bacterianas/biosíntesis , Proteínas Bacterianas/genética , Bivalvos/microbiología , Chlorobi/clasificación , Chlorobi/enzimología , Chlorobi/genética , Ecosistema , Regulación Bacteriana de la Expresión Génica , Branquias/microbiología , Branquias/fisiología , Bacterias Gramnegativas/clasificación , Bacterias Gramnegativas/enzimología , Bacterias Gramnegativas/genética , Respiraderos Hidrotermales , Isoenzimas/biosíntesis , Isoenzimas/genética , Isoenzimas/metabolismo , Methylococcaceae/clasificación , Methylococcaceae/enzimología , Methylococcaceae/genética , Datos de Secuencia Molecular , Muramidasa/biosíntesis , Muramidasa/genética , Filogenia , Alineación de Secuencia , Simbiosis/genética
9.
Biochim Biophys Acta ; 1837(10): 1635-42, 2014 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-24950126

RESUMEN

Chlorobaculum (Cba) tepidum is a green sulfur bacterium that oxidizes sulfide, elemental sulfur, and thiosulfate for photosynthetic growth. As other anoxygenic green photosynthetic bacteria, Cba tepidum synthesizes bacteriochlorophylls for the assembly of a large light-harvesting antenna structure, the chlorosome. Chlorosomes are sac-like structures that are connected to the reaction centers in the cytoplasmic membrane through the BChl α-containing Fenna-Matthews-Olson protein. Most components of the photosynthetic machinery are known on a biophysical level, however, the structural integration of light harvesting with charge separation is still not fully understood. Despite over two decades of research, gaps in our understanding of cellular architecture exist. Here we present an in-depth analysis of the cellular architecture of the thermophilic photosynthetic green sulfur bacterium of Cba tepidum by cryo-electron tomography. We examined whole hydrated cells grown under different electron donor conditions. Our results reveal the distribution of chlorosomes in 3D in an unperturbed cell, connecting elements between chlorosomes and the cytoplasmic membrane and the distribution of reaction centers in the cytoplasmic membrane.


Asunto(s)
Chlorobi/ultraestructura , Tomografía con Microscopio Electrónico/métodos , Chlorobi/fisiología , Frío , Fotosíntesis
10.
Photosynth Res ; 115(1): 23-41, 2013 May.
Artículo en Inglés | MEDLINE | ID: mdl-23435510

RESUMEN

Chlorobaculum [Cba.] tepidum is known to grow optimally at 48-52 °C and can also be cultured at ambient temperatures. In this paper, we prepared constant temperature, temperature shift, and temperature shift followed by backshift cultures and investigated the intrinsic properties and spectral features of chlorosomes from those cultures using various approaches, including temperature-dependent measurements on circular dichroism (CD), UV-visible, and dynamic light scattering. Our studies indicate that (1) chlorosomes from constant temperature cultures at 50 and 30 °C exhibited more resistance to heat relative to temperature shift cultures; (2) as temperature increases bacteriochlorophyll c (BChl c) in chlorosomes is prone to demetalation, which forms bacteriopheophytin c, and degradation under aerobic conditions. Some BChl c aggregates inside reduced chlorosomes prepared in low-oxygen environments can reform after heat treatments; (3) temperature shift cultures synthesize and incorporate more BChl c homologs with a smaller substituent at C-8 on the chlorin ring and less BChl c homologs with a larger long-chain alcohol at C-17(3) versus constant-temperature cultures. We hypothesize that the long-chain alcohol at C-17(3) (and perhaps together with the substituent at C-8) may account for thermal stability of chlorosomes and the substituent at C-8 may assist self-assembling BChls; and (4) while almost identical absorption spectra are detected, chlorosomes from different growth conditions exhibited differences in the rotational length of the CD signal, and aerobic and reduced chlorosomes also display different Qy CD intensities. Further, chlorosomes exhibited changes of CD features in response to temperature increases. Additionally, we compare temperature-dependent studies for the Cba. tepidum chlorosomes and previous studies for the Chloroflexus aurantiacus chlorosomes. Together, our work provides useful and novel insights on the properties and organization of chlorosomes.


Asunto(s)
Proteínas Bacterianas/metabolismo , Bacterioclorofilas/metabolismo , Chlorobi/fisiología , Orgánulos/fisiología , Oxígeno/farmacología , Proteínas Bacterianas/química , Bacterioclorofilas/química , Chlorobi/química , Chlorobi/efectos de los fármacos , Chlorobi/efectos de la radiación , Transferencia de Energía , Calor , Rayos Ultravioleta
11.
Environ Microbiol ; 15(6): 1759-71, 2013 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-23297868

RESUMEN

A novel moderately thermophilic, facultatively anaerobic chemoorganotrophic bacterium strain P3M-2(T) was isolated from a microbial mat developing on the wooden surface of a chute under the flow of hot water (46°C) coming out of a 2775-m-deep oil exploration well (Tomsk region, Russia). Strain P3M-2(T) is a moderate thermophile and facultative anaerobe growing on mono-, di- or polysaccharides by aerobic respiration, fermentation or by reducing diverse electron acceptors [nitrite, Fe(III), As(V)]. Its closest cultivated relative (90.8% rRNA gene sequence identity) is Ignavibacterium album, the only chemoorganotrophic member of the phylum Chlorobi. New genus and species Melioribacter roseus are proposed for isolate P3M-2(T) . Together with I. album, the new organism represents the class Ignavibacteria assigned to the phylum Chlorobi. The revealed group includes a variety of uncultured environmental clones, the 16S rRNA gene sequences of some of which have been previously attributed to the candidate division ZB1. Phylogenetic analysis of M. roseus and I. album based on their 23S rRNA and RecA sequences confirmed that these two organisms could represent an even deeper, phylum-level lineage. Hence, we propose a new phylum Ignavibacteriae within the Bacteroidetes-Chlorobi group with a sole class Ignavibacteria, two families Ignavibacteriaceae and Melioribacteraceae and two species I. album and M. roseus. This proposal correlates with chemotaxonomic data and phenotypic differences of both organisms from other cultured representatives of Chlorobi. The most essential differences, supported by the analyses of complete genomes of both organisms, are motility, facultatively anaerobic and obligately organotrophic mode of life, the absence of chlorosomes and the apparent inability to grow phototrophically.


Asunto(s)
Chlorobi/clasificación , Chlorobi/fisiología , Filogenia , Bacterias Anaerobias/genética , Chlorobi/genética , Chlorobi/ultraestructura , Compuestos Férricos , Genoma Bacteriano/genética , Datos de Secuencia Molecular , ARN Ribosómico 16S/genética , ARN Ribosómico 23S/genética , Rec A Recombinasas/genética , Federación de Rusia , Especificidad de la Especie
12.
Proc Natl Acad Sci U S A ; 108(52): 20908-12, 2011 Dec 27.
Artículo en Inglés | MEDLINE | ID: mdl-22167798

RESUMEN

The photosynthetic light-harvesting apparatus moves energy from absorbed photons to the reaction center with remarkable quantum efficiency. Recently, long-lived quantum coherence has been proposed to influence efficiency and robustness of photosynthetic energy transfer in light-harvesting antennae. The quantum aspect of these dynamics has generated great interest both because of the possibility for efficient long-range energy transfer and because biology is typically considered to operate entirely in the classical regime. Yet, experiments to date show only that coherence persists long enough that it can influence dynamics, but they have not directly shown that coherence does influence energy transfer. Here, we provide experimental evidence that interaction between the bacteriochlorophyll chromophores and the protein environment surrounding them not only prolongs quantum coherence, but also spawns reversible, oscillatory energy transfer among excited states. Using two-dimensional electronic spectroscopy, we observe oscillatory excited-state populations demonstrating that quantum transport of energy occurs in biological systems. The observed population oscillation suggests that these light-harvesting antennae trade energy reversibly between the protein and the chromophores. Resolving design principles evident in this biological antenna could provide inspiration for new solar energy applications.


Asunto(s)
Chlorobi/fisiología , Transferencia de Energía/fisiología , Complejos de Proteína Captadores de Luz/fisiología , Modelos Moleculares , Fotosíntesis/genética , Modelos Químicos , Fotosíntesis/fisiología , Teoría Cuántica , Análisis Espectral/métodos
13.
Plant Cell ; 23(7): 2644-58, 2011 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-21764989

RESUMEN

Monogalactosyldiacylglycerol (MGDG), which is conserved in almost all photosynthetic organisms, is the most abundant natural polar lipid on Earth. In plants, MGDG is highly accumulated in the chloroplast membranes and is an important bulk constituent of thylakoid membranes. However, precise functions of MGDG in photosynthesis have not been well understood. Here, we report a novel MGDG synthase from the green sulfur bacterium Chlorobaculum tepidum. This enzyme, MgdA, catalyzes MGDG synthesis using UDP-Gal as a substrate. The gene encoding MgdA was essential for this bacterium; only heterozygous mgdA mutants could be isolated. An mgdA knockdown mutation affected in vivo assembly of bacteriochlorophyll c aggregates, suggesting the involvement of MGDG in the construction of the light-harvesting complex called chlorosome. These results indicate that MGDG biosynthesis has been independently established in each photosynthetic organism to perform photosynthesis under different environmental conditions. We complemented an Arabidopsis thaliana MGDG synthase mutant by heterologous expression of MgdA. The complemented plants showed almost normal levels of MGDG, although they also had abnormal morphological phenotypes, including reduced chlorophyll content, no apical dominance in shoot growth, atypical flower development, and infertility. These observations provide new insights regarding the importance of regulated MGDG synthesis in the physiology of higher plants.


Asunto(s)
Proteínas Bacterianas/metabolismo , Chlorobi/enzimología , Chlorobi/fisiología , Galactolípidos/biosíntesis , Galactosiltransferasas/metabolismo , Fotosíntesis/fisiología , Secuencia de Aminoácidos , Arabidopsis/anatomía & histología , Arabidopsis/enzimología , Arabidopsis/genética , Arabidopsis/metabolismo , Proteínas de Arabidopsis/genética , Proteínas de Arabidopsis/metabolismo , Proteínas Bacterianas/clasificación , Proteínas Bacterianas/genética , Chlorobi/química , Chlorobi/genética , Cloroplastos/metabolismo , Cloroplastos/ultraestructura , Galactosiltransferasas/clasificación , Galactosiltransferasas/genética , Técnicas de Silenciamiento del Gen , Prueba de Complementación Genética , Datos de Secuencia Molecular , Fenotipo , Filogenia , Plantas Modificadas Genéticamente , Alineación de Secuencia
14.
J Biol Chem ; 285(45): 35104-12, 2010 Nov 05.
Artículo en Inglés | MEDLINE | ID: mdl-20807773

RESUMEN

The recently discovered heliobacteria are the only Gram-positive photosynthetic bacteria that have been cultured. One of the unique features of heliobacteria is that they have properties of both the photosynthetic green sulfur bacteria (containing the type I reaction center) and Clostridia (forming heat-resistant endospores). Most of the previous studies of heliobacteria, which are strict anaerobes and have the simplest known photosynthetic apparatus, have focused on energy and electron transfer processes. It has been assumed that like green sulfur bacteria, the major carbon flow in heliobacteria is through the (incomplete) reductive (reverse) tricarboxylic acid cycle, whereas the lack of CO(2)-enhanced growth has not been understood. Here, we report studies to fill the knowledge gap of heliobacterial carbon metabolism. We confirm that the CO(2)-anaplerotic pathway is active during phototrophic growth and that isoleucine is mainly synthesized from the citramalate pathway. Furthermore, to our surprise, our results suggest that the oxidative (forward) TCA cycle is operative and more active than the previously reported reductive (reverse) tricarboxylic acid cycle. Both isotopomer analysis and activity assays suggest that citrate is produced by a putative (Re)-citrate synthase and then enters the oxidative (forward) TCA cycle. Moreover, in contrast to (Si)-citrate synthase, (Re)-citrate synthase produces a different isomer of 2-fluorocitrate that is not expected to inhibit the activity of aconitase.


Asunto(s)
Carbono/metabolismo , Chlorobi/fisiología , Ciclo del Ácido Cítrico/fisiología , Clostridium/fisiología , Aconitato Hidratasa/metabolismo , Anaerobiosis/fisiología , Proteínas Bacterianas/metabolismo , Dióxido de Carbono/metabolismo , Citrato (si)-Sintasa/metabolismo , Ácido Cítrico/metabolismo , Isoleucina/metabolismo
15.
Adv Exp Med Biol ; 675: 15-29, 2010.
Artículo en Inglés | MEDLINE | ID: mdl-20532733

RESUMEN

Phototrophic consortia currently represent the most highly developed interspecific association between prokaryotes and consist of green sulfur bacterial epibionts which surround a central, motile, chemotrophic bacterium. Several independent experimental findings indicate that a rapid signal transfer occurs between the epibionts and the central bacterium. First, the cell division of the partner bacteria occurs in a highly coordinated fashion. Second, consortia accumulate scotophobotactically in the light, whereby the central bacterium confers motility to the consortium and the epibionts act as light sensors. Third, the organic carbon uptake of the central bacterium seems to be controlled by the epibiont. A decade ago, a laboratory culture of the phototrophic consortium "Chlorochromatium aggregatum" could be established and maintained. Using "C. aggregatum," recent genomic, transcriptomic, and proteomic studies have started to unravel the molecular basis of prokaryotic heterologous multicellularity in this model system.


Asunto(s)
Chlorobi/fisiología , Fotosíntesis , Células Procariotas/fisiología , Proteobacteria/fisiología , Simbiosis/fisiología
16.
Environ Microbiol ; 12(5): 1348-62, 2010 May.
Artículo en Inglés | MEDLINE | ID: mdl-20236170

RESUMEN

The Black Sea chemocline represents the largest extant habitat of anoxygenic phototrophic bacteria and harbours a monospecific population of Chlorobium phylotype BS-1. High-sensitivity measurements of underwater irradiance and sulfide revealed that the optical properties of the overlying water column were similar across the Black Sea basin, whereas the vertical profiles of sulfide varied strongly between sampling sites and caused a dome-shaped three-dimensional distribution of the green sulfur bacteria. In the centres of the western and eastern basins the population of BS-1 reached upward to depths of 80 and 95 m, respectively, but were detected only at 145 m depth close to the shelf. Using highly concentrated chemocline samples from the centres of the western and eastern basins, the cells were found to be capable of anoxygenic photosynthesis under in situ light conditions and exhibited a photosynthesis-irradiance curve similar to low-light-adapted laboratory cultures of Chlorobium BS-1. Application of a highly specific RT-qPCR method which targets the internal transcribed spacer (ITS) region of the rrn operon of BS-1 demonstrated that only cells at the central station are physiologically active in contrast to those at the Black Sea periphery. Based on the detection of ITS-DNA sequences in the flocculent surface layer of deep-sea sediments across the Black Sea, the population of BS-1 has occupied the major part of the basin for the last decade. The continued presence of intact but non-growing BS-1 cells at the periphery of the Black Sea indicates that the cells can survive long-distant transport and exhibit unusually low maintenance energy requirements. According to laboratory measurements, Chlorobium BS-1 has a maintenance energy requirement of approximately 1.6-4.9.10(-15) kJ cell(-1) day(-1) which is the lowest value determined for any bacterial culture so far. Chlorobium BS-1 thus is particularly well adapted to survival under the extreme low-light conditions of the Black Sea, and can be used as a laboratory model to elucidate general cellular mechanisms of long-term starvation survival. Because of its adaptation to extreme low-light marine environments, Chlorobium BS-1 also represents a suitable indicator for palaeoceanography studies of deep photic zone anoxia in ancient oceans.


Asunto(s)
Adaptación Fisiológica , Chlorobi/aislamiento & purificación , Chlorobi/fisiología , Luz , Fotosíntesis , Agua de Mar/microbiología , Chlorobi/clasificación , Chlorobi/genética , Ecosistema , Ambiente , Sedimentos Geológicos/microbiología , Sulfuros/metabolismo
17.
Antonie Van Leeuwenhoek ; 97(4): 419-31, 2010 May.
Artículo en Inglés | MEDLINE | ID: mdl-20177778

RESUMEN

The taxonomic significance of salt tolerance or requirements in green sulfur bacteria has been analyzed with environmental populations and enrichment cultures from several saline systems (inland and coastal water bodies) with different salinities (salt composition and concentration). Novel phylotypes of green sulfur bacteria have been found in hypersaline and brackish environments and 16S rRNA gene sequence analysis affiliated them into phylogenetic groups in which neither halotolerant nor halophilic species have been known to date. Therefore, salt tolerance does not seem to be restricted to members of any specific subgroup but is widespread among all the different phylogenetic branches of the green sulfur bacteria group, and closely-related phylotypes can have dissimilar salt tolerance capacities. Thus the phenotypic characteristics and phylogenetic structure of the green sulfur bacteria present some incongruities. Phenotypic traits should be studied further in order to determine the ecophysiological features of green sulfur bacteria phylotypes.


Asunto(s)
Chlorobi/clasificación , Chlorobi/fisiología , Ecosistema , Microbiología Ambiental , Salinidad , Chlorobi/genética , Análisis por Conglomerados , ADN Bacteriano/química , ADN Bacteriano/genética , ADN Ribosómico/química , ADN Ribosómico/genética , Datos de Secuencia Molecular , Filogenia , ARN Ribosómico 16S/genética , Sales (Química)/metabolismo , Análisis de Secuencia de ADN
18.
Environ Microbiol ; 12(8): 2259-76, 2010 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-21966918

RESUMEN

The phototrophic consortium 'Chlorochromatium aggregatum' is a highly structured association of green sulfur bacterial epibionts surrounding a central, motile bacterium and is the most specific symbiosis currently known between two phylogenetically distinct bacterial species. Genes and gene products potentially involved in the symbiotic interaction were identified on the genomic, transcriptomic and proteomic level. As compared with the 11 available genomes of free-living relatives, only 186 open reading frames were found to be unique to the epibiont genome. 2-D differential gel electrophoresis (2-D DIGE) of the soluble proteomes recovered 1612 protein spots of which 54 were detected exclusively in consortia but not in pure epibiont cultures. Using mass spectrometry analyses, the 13 most intense of the 54 spots could be attributed to the epibiont. Analyses of the membrane proteins of consortia, of consortia treated with cross-linkers and of pure cultures indicated that a branched chain amino acid ABC-transporter binding protein is only expressed in the symbiotic state of the epibiont. Furthermore, analyses of chlorosomes revealed that an uncharacterized 11 kDa epibiont protein is only expressed during symbiosis. This protein may be involved in the intracellular sorting of chlorosomes. Application of a novel prokaryotic cDNA suppression subtractive hybridization technique led to identification of 14 differentially regulated genes, and comparison of the transcriptomes of symbiotic and free-living epibionts indicated that 328 genes were differentially transcribed. The three approaches were mostly complementary and thereby yielded a first inventory of 352 genes that are likely to be involved in the bacterial interaction in 'C. aggregatum'. Notably, most of the regulated genes encoded components of central metabolic pathways whereas only very few (7.5%) of the unique 'symbiosis genes' turned out to be regulated under the experimental conditions tested. This pronounced regulation of central metabolic pathways may serve to fine-tune the symbiotic interaction in 'C. aggregatum' in response to environmental conditions.


Asunto(s)
Chlorobi/genética , Consorcios Microbianos/genética , Simbiosis/genética , Chlorobi/fisiología , ADN Bacteriano/genética , Regulación Bacteriana de la Expresión Génica , Genes Bacterianos , Genoma Bacteriano , Datos de Secuencia Molecular , Sistemas de Lectura Abierta , Proteoma , Análisis de Secuencia de ADN , Transcriptoma
19.
Mol Plant ; 2(2): 336-43, 2009 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-19825618

RESUMEN

Thioredoxin is a small ubiquitous protein that is involved in the dithiol-disulfide exchange reaction, by way of two cysteine residues located on the molecule surface. In order to elucidate the role of thioredoxin in Chlorobaculum tepidum, an anaerobic green sulfur bacterium that uses various inorganic sulfur compounds and H(2)S as electron donors under strict anaerobic conditions for growth, we applied the thioredoxin affinity chromatography method (Motohashi et al., 2001). In this study, 37 cytoplasmic proteins were captured as thioredoxin target candidates, including proteins involved in sulfur assimilation. Furthermore, six of the candidate proteins were members of the reductive tricarboxylic acid cycle (pyruvate orthophosphate dikinase, pyruvate flavodoxin/ferredoxin oxidoreductase, alpha-oxoglutarate synthase, citrate lyase, citrate synthase, malate dehydrogenase). The redox sensitivity of three enzymes was then examined: citrate lyase, citrate synthase, and malate dehydrogenase, using their recombinant proteins. Based on the information relating to the target proteins, the significance of thioredoxin as a reductant for the metabolic pathway in the anaerobic photosynthetic bacteria is discussed.


Asunto(s)
Chlorobi/fisiología , Tiorredoxinas/fisiología , Chlorobi/metabolismo , Ciclo del Ácido Cítrico , Oxidación-Reducción , Tiorredoxinas/metabolismo
20.
Proc Natl Acad Sci U S A ; 106(41): 17255-60, 2009 Oct 13.
Artículo en Inglés | MEDLINE | ID: mdl-19815512

RESUMEN

The observation of long-lived electronic coherence in a photosynthetic pigment-protein complex, the Fenna-Matthews-Olson (FMO) complex, is suggestive that quantum coherence might play a significant role in achieving the remarkable efficiency of photosynthetic electronic energy transfer (EET), although the data were acquired at cryogenic temperature [Engel GS, et al. (2007) Evidence for wavelike energy transfer through quantum coherence in photosynthetic systems. Nature 446:782-786]. In this paper, the spatial and temporal dynamics of EET through the FMO complex at physiological temperature are investigated theoretically. The numerical results reveal that quantum wave-like motion persists for several hundred femtoseconds even at physiological temperature, and suggest that the FMO complex may work as a rectifier for unidirectional energy flow from the peripheral light-harvesting antenna to the reaction center complex by taking advantage of quantum coherence and the energy landscape of pigments tuned by the protein scaffold. A potential role of quantum coherence is to overcome local energetic traps and aid efficient trapping of electronic energy by the pigments facing the reaction center complex.


Asunto(s)
Fotosíntesis/fisiología , Teoría Cuántica , Evolución Biológica , Chlorobi/fisiología , Electrónica , Transferencia de Energía/fisiología , Modelos Biológicos , Rhodobacter sphaeroides/fisiología , Temperatura
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