Your browser doesn't support javascript.
loading
Mostrar: 20 | 50 | 100
Resultados 1 - 20 de 83
Filtrar
1.
Methods Enzymol ; 702: 21-50, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-39155112

RESUMEN

Siderophore-antibiotic conjugates (SACs) are of past and current interest for delivering antibacterials into Gram-negative bacterial pathogens that express siderophore receptors. Studies of SACs are often multifaceted and involve chemical and biological approaches. Major goals are to evaluate the antimicrobial activity and uptake of novel SACs and use the resulting data to inform further mode-of-action studies and molecular design strategies. In this chapter, we describe four key methods that we apply when investigating the antimicrobial activity and uptake of novel SACs based on the siderophore enterobactin (Ent). These methods are based on approaches from the siderophore literature as well as established protocols for antimicrobial activity testing, and include assays for evaluating SAC antimicrobial activity, time-kill kinetics, siderophore competition, and bacterial cell uptake using 57Fe. These assays have served us well in characterizing our Ent-based conjugates and can be applied to study SACs that use other siderophores as targeting vectors.


Asunto(s)
Antibacterianos , Enterobactina , Sideróforos , Sideróforos/química , Sideróforos/farmacología , Antibacterianos/farmacología , Antibacterianos/química , Enterobactina/química , Enterobactina/metabolismo , Pruebas de Sensibilidad Microbiana/métodos
2.
Protein Sci ; 33(8): e5122, 2024 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-39031458

RESUMEN

Enterobactin is a high-affinity iron chelator produced and secreted by Escherichia coli and Salmonella typhimurium to scavenge scarce extracellular Fe3+ as a micronutrient. EntC and EntB are the first two enzymes in the enterobactin biosynthetic pathway. Isochorismate, produced by EntC, is a substrate for EntB isochorismatase. By using a competing isochorismate-consuming enzyme (the E. coli SEPHCHC synthase MenD), we found in a coupled assay that residual EntB isochorismatase activity decreased as a function of increasing MenD concentration. In the presence of excess MenD, EntB isochorismatase activity was observed to decrease by 84%, indicative of partial EntC-EntB channeling (16%) of isochorismate. Furthermore, addition of glycerol to the assay resulted in an increase of residual EntB isochorismatase activity to approximately 25% while in the presence of excess MenD. These experimental outcomes supported the existence of a substrate channeling surface identified in a previously reported protein-docking model of the EntC-EntB complex. Two positively charged EntB residues (K21 and R196) that were predicted to electrostatically guide negatively charged isochorismate between the EntC and EntB active sites were mutagenized to determine their effects on substrate channeling. The EntB variants K21D and R196D exhibited a near complete loss of isochorismatase activity, likely due to electrostatic repulsion of the negatively charged isochorismate substrate. Variants K21A, R196A, and K21A/R196A retained partial EntB isochorismatase activity in the absence of EntC; in the presence of EntC, isochorismatase activity in all variants increased to near wild-type levels. The MenD competition assay of the variants revealed that while K21A channeled isochorismate as efficiently as wild-type EntB (~ 15%), the variants K21A/R196A and R196A exhibited an approximately 5-fold loss in observed channeling efficiency (~3%). Taken together, these results demonstrate that partial substrate channeling occurs between EntC and EntB via a leaky electrostatic tunnel formed upon dynamic EntC-EntB complex formation and that EntB R196 plays an essential role in isochorismate channeling.


Asunto(s)
Enterobactina , Proteínas de Escherichia coli , Escherichia coli , Enterobactina/biosíntesis , Enterobactina/metabolismo , Enterobactina/química , Escherichia coli/genética , Escherichia coli/metabolismo , Escherichia coli/enzimología , Proteínas de Escherichia coli/metabolismo , Proteínas de Escherichia coli/química , Proteínas de Escherichia coli/genética , Ácido Corísmico/metabolismo , Ácido Corísmico/química , Hidrolasas
3.
Acc Chem Res ; 57(7): 1046-1056, 2024 04 02.
Artículo en Inglés | MEDLINE | ID: mdl-38483177

RESUMEN

Siderophores are secondary metabolites utilized by bacteria to acquire iron (Fe), an essential transition metal nutrient. Fe levels in the host environment are tightly regulated and can be further restricted to starve invading bacterial pathogens in a host-defense process known as nutritional immunity. To survive and colonize the Fe-limited host environment, bacteria produce siderophores and express cognate siderophore transport machinery. These active transport pathways present an opportunity for selective and efficient drug delivery into bacterial cells, motivating decades of research on synthetic siderophore-antibiotic conjugates (SACs) as a Trojan-horse strategy for the development of targeted antibiotics.Enterobactin (Ent) is a triscatecholate siderophore produced and utilized by many Gram-negative bacteria, including all Escherichia coli and Salmonella species. Within these species, pathogenic strains cause a variety of human diseases including urinary tract infections, gastroenteritis, and sepsis. Infections caused by these Gram-negative pathogens can be difficult to treat because of the impermeability of the outer membrane (OM). This impermeability can be overcome by utilizing siderophores as drug delivery vectors for targeting Gram-negative pathogens. Ent is a promising delivery vector because it undergoes active transport across the OM mediated by the Ent uptake machinery after scavenging Fe(III) from the extracellular environment. Despite the well-elucidated chemistry and biology of Ent, its use for SAC development was hampered by the lack of an appropriate functional group for cargo attachment. Our laboratory addressed this need by designing and synthesizing monofunctionalized Ent scaffolds. Over the past decade, we have used these scaffolds to explore Ent-based SACs with a variety of drug warheads, including ß-lactam and fluoroquinolone antibiotics, and Pt(IV) prodrugs. Investigations of the antibacterial activities of these conjugates and their cellular fates have informed our design principles and revealed approaches to achieving enhanced antibacterial potency and pathogen-targeted activity. Collectively, our studies of Ent-drug conjugates have provided discoveries, understanding, and invaluable insights for future design and evaluation of SACs.In this Account, we present the story of our work on Ent-drug conjugates that began about ten years ago with the development of monofunctionalized Ent scaffolds and the design and synthesis of various conjugates based on these scaffolds. We describe the antibacterial activity profiles and uptake pathways of Ent-drug conjugates harboring traditional antibiotics and repurposed platinum anticancer agents as well as studies that address cellular targets and fates. Finally, we discuss other applications of monofunctionalized Ent scaffolds, including a siderophore-based immunization strategy. We intend for this Account to inspire further investigations into the fundamental understanding and translational applications of siderophores and siderophore-drug conjugates.


Asunto(s)
Enterobactina , Compuestos Férricos , Humanos , Enterobactina/química , Enterobactina/metabolismo , Preparaciones Farmacéuticas , Antibacterianos/química , Sideróforos/química , Sideróforos/metabolismo , Escherichia coli/metabolismo
4.
BMC Microbiol ; 24(1): 95, 2024 Mar 22.
Artículo en Inglés | MEDLINE | ID: mdl-38519885

RESUMEN

BACKGROUND: The emergence of antimicrobial resistance in bacterial pathogens is a growing concern worldwide due to its impact on the treatment of bacterial infections. The "Trojan Horse" strategy has been proposed as a potential solution to overcome drug resistance caused by permeability issues. OBJECTIVE: The objective of our research was to investigate the bactericidal activity and mechanism of action of the "Trojan Horse" strategy using enterobactin conjugated with Ciprofloxacin and Fosfomycin against the antibiotic-resistant Escherichia coli strain OQ866153. METHODOLOGY: Enterobactin, a mixed ligand of E. coli OQ866153, was conjugated with Ciprofloxacin and Fosfomycin individually to aid active absorption via specific enterobactin binding proteins (FepABCDG). The effectiveness of the conjugates was assessed by measuring their bactericidal activity against E. coli OQ866153, as well as their ability to inhibit DNA gyrase enzyme and biofilm formation. RESULTS: The Fe+3-enterobactin-Ciprofloxacin conjugate effectively inhibited the DNA gyrase enzyme (Docking score = -8.597 kcal/mol) and resulted in a lower concentration (25 µg/ml) required to eliminate supercoiled DNA plasmids compared to the parent drug (35 µg/ml; Docking score = -6.264 kcal/mol). The Fe+3-Enterobactin-Fosfomycin conjugate showed a higher inhibition percentage (100%) of biofilm formation compared to Fosfomycin (21.58%) at a concentration of 2 mg/ml, with docking scores of -5.481 and -3.756 kcal/mol against UDP-N acetylglucosamine 1-carboxyvinyltransferase MurA. CONCLUSION: The findings of this study suggest that the "Trojan Horse" strategy using enterobactin conjugated with Ciprofloxacin and Fosfomycin can effectively overcome permeability issues caused by efflux proteins and enhance the bactericidal activity of these drugs against antibiotic-resistant strains of E. coli.


Asunto(s)
Antibacterianos , Fosfomicina , Antibacterianos/química , Fosfomicina/farmacología , Ciprofloxacina/farmacología , Escherichia coli , Enterobactina/química , Enterobactina/metabolismo , Enterobactina/farmacología , Girasa de ADN , Pruebas de Sensibilidad Microbiana
5.
Biomolecules ; 12(10)2022 Oct 19.
Artículo en Inglés | MEDLINE | ID: mdl-36291725

RESUMEN

Titanium dioxide nanoparticles (TiO2-NPs) are increasingly used in consumer products for their particular properties. Even though TiO2 is considered chemically stable and insoluble, studying their behavior in biological environments is of great importance to figure their potential dissolution and transformation. The interaction between TiO2-NPs with different sizes and crystallographic forms (anatase and rutile) and the strong chelating enterobactin (ent) siderophore was investigated to look at a possible dissolution. For the first time, direct evidence of anatase TiO2-NP surface dissolution or solubilization (i.e., the removal of Ti atoms located at the surface) in a biological medium by this siderophore was shown and the progressive formation of a hexacoordinated titanium-enterobactin (Ti-ent) complex observed. This complex was characterized by UV-visible and Fourier transform infrared (FTIR) spectroscopy (both supported by Density Functional Theory calculations) as well as electrospray ionization mass spectrometry (ESI-MS) and X-ray photoelectron spectroscopy (XPS). A maximum of ca. 6.3% of Ti surface atoms were found to be solubilized after 24 h of incubation, releasing Ti-ent complexes in the micromolar range that could then be taken up by bacteria in an iron-depleted medium. From a health and environmental point of view, the effects associated to the solubilization of the E171 TiO2 food additive in the presence of enterobactin and the entrance of the Ti-enterobactin complex in bacteria were questioned.


Asunto(s)
Nanopartículas , Titanio , Titanio/química , Enterobactina/química , Sideróforos , Ligandos , Nanopartículas/química , Hierro , Aditivos Alimentarios
6.
Chem Pharm Bull (Tokyo) ; 69(2): 222-225, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-33518604

RESUMEN

The gatekeeping adenylation (A) domain of the non-ribosomal peptide synthetase (NRPS) selectively incorporates specific proteinogenic/non-proteinogenic amino acid into a growing peptide chain. The EntE of the enterobactin NRPS is a discrete aryl acid A-domain with 2,3-dihydroxybenzoic acid (DHB) substrate specificity. Reprogrammed EntE N235G variant possesses an enlarged substrate recognition site, and is capable of accepting non-native aryl acids. Biochemical characterization of this unique substrate recognition site should provide a better understanding of activi-site microenvironments. Here, we synthesized a non-hydrolysable adenylate analogue with 2-aminobenzoic acid (2-ABA), 3-aminobenzoic acid (3-ABA), and 4-aminobenzoic acid (4-ABA) and used them to calculate the apparent inhibition constants (Kiapp.). Dose-response experiments using 3-ABA-sulfamoyladenosine (AMS) provided Kiapp. values of 596 nM for wild-type EntE and 2.4 nM for the N235G variants. These results suggest that 3-amino group of benzoic acid plays an important role in substrate recognition by the N235G variant. These findings would help designing aryl acid substrates with substituents at the 2- and 3-positions.


Asunto(s)
Simulación de Dinámica Molecular , Péptido Sintasas/metabolismo , Ácido 4-Aminobenzoico/química , Ácido 4-Aminobenzoico/metabolismo , Sitios de Unión , Enterobactina/química , Enterobactina/metabolismo , Cinética , Mutagénesis Sitio-Dirigida , Péptido Sintasas/antagonistas & inhibidores , Péptido Sintasas/genética , Unión Proteica , Dominios Proteicos , Especificidad por Sustrato
7.
J Nat Prod ; 84(1): 136-141, 2021 01 22.
Artículo en Inglés | MEDLINE | ID: mdl-33337146

RESUMEN

Chemical investigation of a marine sponge-associated Bacillus sp. led to the discovery of bacillibactins E and F (1 and 2). Despite containing the well-established cyclic triester core of iron-binding natural products such as enterobactin, bacillibactins E and F (1 and 2) are the first bacterial siderophores that contain nicotinic and benzoic acid moieties. The structures of the new compounds, including their absolute configurations, were determined by extensive spectroscopic analyses and Marfey's method. A plausible biosynthetic pathway to 1 and 2 is proposed; this route bears great similarity to other previously established bacillibactin-like pathways but appears to differentiate itself by a promiscuous DhbE, which likely installs the nicotinic moiety of 1 and the benzoic acid group of 2.


Asunto(s)
Bacillus/química , Enterobactina/química , Hierro/metabolismo , Poríferos/metabolismo , Sideróforos/química , Animales , Bacillus/metabolismo , Enterobactina/metabolismo , Hierro/química , Estructura Molecular , Oligopéptidos , Poríferos/química
8.
J Phys Chem Lett ; 11(15): 6063-6067, 2020 Aug 06.
Artículo en Inglés | MEDLINE | ID: mdl-32635727

RESUMEN

Two-photon-excited fluorescence spectroscopy is a powerful tool to study the structural and electronic properties of optically active complexes and molecules. Although numerous lanthanide complexes have been characterized by two-photon-excited fluorescence in solution, this report is the first to apply such a technique to actinide compounds. Contrasting with previous observations in lanthanides, we demonstrate that the two-photon absorption properties of the complexes significantly depend on the metal (4f vs 5f), with Cm(III) complexes showing significantly higher two-photon absorption cross sections than lanthanide analogues and up to 200-fold stronger emission intensities. These results are consistent with electronic and structural differences between the lanthanide and actinide systems studied. Hence, the described methodology can provide valuable insights into the interactions between f-elements and ligands, along with promising prospects on the characterization of scarce compounds.


Asunto(s)
Complejos de Coordinación/química , Curio/química , Colorantes Fluorescentes/química , Catecolaminas/química , Transporte de Electrón , Enterobactina/química , Europio/química , Fluoresceína/química , Ligandos , Estructura Molecular , Fotones , Piridonas/química , Espectrometría de Fluorescencia , Terbio/química
9.
ACS Chem Biol ; 15(5): 1154-1160, 2020 05 15.
Artículo en Inglés | MEDLINE | ID: mdl-31869199

RESUMEN

Both host and pathogen competitively manipulate coordination environments during bacterial infections. Human cells release the innate immune protein siderocalin (Scn, also known as lipocalin-2/Lcn2, neutrophil gelatinase-associated lipocalin/NGAL) that can inhibit bacterial growth by sequestering iron in a ferric complex with enterobactin (Ent), the ubiquitous Escherichia coli siderophore. Pathogenic E. coli use the virulence-associated esterase IroE to linearize the Ent cyclic trilactone to linear enterobactin (lin-Ent). We characterized lin-Ent interactions with Scn by using native mass spectrometry (MS) with hydrogen-deuterium exchange (HDX) and Lys/Arg specific covalent footprinting. These approaches support 1:1 binding of both Fe(III)-lin-Ent to Scn and iron-free lin-Ent to Scn. Both ferric and nonferric lin-Ent localize to all three pockets of the Scn calyx, consistent with Scn capture of lin-Ent both before and after Fe(III) chelation. These findings raise the possibility that Scn neutralizes both siderophores and siderophore-bound iron during infections. This integrated, MS-based approach circumvents the limitations that frustrate traditional structural approaches to examining Scn interactions with enterobactin-based ligands.


Asunto(s)
Aminoácidos/química , Proteínas Portadoras/química , Enterobactina/química , Compuestos Férricos/química , Espectrometría de Masas/métodos , Sitios de Unión , Complejos de Coordinación/química , Deuterio/química , Escherichia coli/química , Humanos , Marcaje Isotópico , Ligandos , Lipocalina 2 , Péptidos/química , Conformación Proteica , Sideróforos/química
10.
ACS Chem Biol ; 15(1): 234-242, 2020 01 17.
Artículo en Inglés | MEDLINE | ID: mdl-31613081

RESUMEN

Lcn2 is a host defense protein induced via the innate immune response to sequester iron-loaded bacterial siderophores. However, excess or prolonged elevation of Lcn2 levels can induce adverse cellular effects, including oxidative stress and inflammation. In this work, we use Hydrogen-Deuterium eXchange (HDX) and Isothermal Titration Calorimetry (ITC) to characterize the binding interaction between Lcn2 and siderophores enterobactin and 2,3-DHBA, in the presence and absence of iron. Our results indicate a rare "Type II" interaction in which binding of siderophores drives the protein conformational equilibrium toward an unfolded state. Linking our molecular model to cellular assays, we demonstrate that this "distorted binding mode" facilitates a deleterious cellular accumulation of reactive oxygen species that could represent the molecular origin of Lcn2 pathology. These results add important insights into mechanisms of Lcn2 action and have implications in Lcn2-mediated effects including inflammation.


Asunto(s)
Antiinfecciosos/química , Proteínas Bacterianas/química , Deuterio/química , Lipocalina 2/química , Sideróforos/química , Antiinfecciosos/metabolismo , Proteínas Bacterianas/metabolismo , Línea Celular , Relación Dosis-Respuesta a Droga , Descubrimiento de Drogas , Enterobactina/química , Humanos , Hidroxibenzoatos/química , Inmunidad Innata/efectos de los fármacos , Hierro/química , Cinética , Lipocalina 2/metabolismo , Simulación del Acoplamiento Molecular , Unión Proteica , Conformación Proteica , Especies Reactivas de Oxígeno/metabolismo , Sideróforos/metabolismo , Coloración y Etiquetado , Relación Estructura-Actividad
11.
Nat Commun ; 10(1): 3673, 2019 08 14.
Artículo en Inglés | MEDLINE | ID: mdl-31413254

RESUMEN

Bacteria use small molecules called siderophores to scavenge iron. Siderophore-Fe3+ complexes are recognised by outer-membrane transporters and imported into the periplasm in a process dependent on the inner-membrane protein TonB. The siderophore enterobactin is secreted by members of the family Enterobacteriaceae, but many other bacteria including Pseudomonas species can use it. Here, we show that the Pseudomonas transporter PfeA recognises enterobactin using extracellular loops distant from the pore. The relevance of this site is supported by in vivo and in vitro analyses. We suggest there is a second binding site deeper inside the structure and propose that correlated changes in hydrogen bonds link binding-induced structural re-arrangements to the structural adjustment of the periplasmic TonB-binding motif.


Asunto(s)
Proteínas de la Membrana Bacteriana Externa/metabolismo , Proteínas Portadoras/metabolismo , Enterobactina/metabolismo , Hierro/metabolismo , Pseudomonas aeruginosa/metabolismo , Receptores de Superficie Celular/metabolismo , Proteínas de la Membrana Bacteriana Externa/química , Proteínas Bacterianas , Sitios de Unión , Proteínas Portadoras/química , Cristalización , Cristalografía por Rayos X , Enterobactina/química , Escherichia coli , Técnicas In Vitro , Radioisótopos de Hierro , Proteínas de la Membrana , Receptores de Superficie Celular/química , Sideróforos/química , Sideróforos/metabolismo
12.
Phys Chem Chem Phys ; 21(29): 16017-16031, 2019 Jul 24.
Artículo en Inglés | MEDLINE | ID: mdl-31304940

RESUMEN

Enterobactin (Ent) is a typical siderophore with strong iron affinity. Its dynamics in its intact form and holo state remains to be studied to understand its role in the in vivo behavior of metal ions and to facilitate its potential application in drug design and environmental remediation. Here, we report molecular dynamics simulations of both Ent enantiomers and their complexes with key actinides (Am3+, Cm3+, Th4+, U4+, Np4+ and Pu4+) to study the folding equilibria of Ent enantiomers and their binding affinity with actinides. For comparison, the ferric cation was also considered. In their neutral state, both enantiomers may exist in their folded and extended states in the aqueous phase with the former more stable owing to the favorable cation-π, π-π, and H-bond interactions. A helicity preference was observed in the folded states of Ent enantiomers, which was solidified when binding with Fe3+ while disrupted when binding with actinides. Upon binding with metal ions, the dynamics of Ent enantiomers exhibited dependence on the metal ions, and appeared to be more flexible in An3+/4+-Ent complexes than in Fe3+-Ent complexes. The conformational analysis and the energy decomposition of M3+/4+-Ent complexes indicated that their distinct conformational variations and dynamic fluxionality are enthalpy driven behaviors and dependent on the nature of the loaded metal ions. The Fe3+-Ent complexes had a more compact conformation, while the relatively loosely bound An3+/4+-Ent complexes allowed solvent water molecules to access the first coordination shell of An3+/4+ and weaken the interaction between An3+/4+ and Ent. This work is expected to enrich our knowledge of the folding equilibria of Ent enantiomers and their An3+/4+-Ent complexes, and contribute to communities that concern the in vivo and in vitro behaviors of Ent enantiomers and actinides.


Asunto(s)
Elementos de Series Actinoides/química , Enterobactina/química , Modelos Moleculares , Conformación Molecular , Simulación de Dinámica Molecular , Estereoisomerismo , Termodinámica
13.
Sci Rep ; 8(1): 13540, 2018 09 10.
Artículo en Inglés | MEDLINE | ID: mdl-30202114

RESUMEN

Given the tight relation between protein structure and function, we present a set of methods to analyze protein topology, implemented in the VLDP program, relying on Laguerre space partitions built from series of molecular dynamics snapshots. The Laguerre partition specifies inter-atomic contacts, formalized in graphs. The deduced properties are the existence and count of water aggregates, possible passage ways and constrictions, the structure, connectivity, stability and depth of the water network. As a test-case, the membrane protein FepA is investigated in its full environment, yielding a more precise description of the protein surface. Inside FepA, the solvent splits into isolated clusters and an intricate network connecting both sides of the lipid bilayer. The network is dynamic, connections set on and off, occasionally substantially relocating traversing paths. Subtle differences are detected between two forms of FepA, ligand-free and complexed with its natural iron carrier, the enterobactin. The complexed form has more constricted and more centered openings in the upper part whereas, in the lower part, constriction is released: two main channels between the plug and barrel lead directly to the periplasm. Reliability, precision and the variety of topological features are the main interest of the method.


Asunto(s)
Proteínas de la Membrana Bacteriana Externa/química , Proteínas Portadoras/química , Simulación de Dinámica Molecular , Estructura Secundaria de Proteína , Receptores de Superficie Celular/química , Enterobactina/química , Estabilidad Proteica , Relación Estructura-Actividad , Agua/química
14.
J Biol Inorg Chem ; 23(7): 1009-1022, 2018 10.
Artículo en Inglés | MEDLINE | ID: mdl-30135989

RESUMEN

Vibrio campbellii BAA-1116 (formerly Vibrio harveyi) is a model organism for quorum sensing study and produces the siderophores anguibactin and amphi-enterobactin. This study examined the mechanisms and specificity of siderophore uptake in V. campbellii and V. harveyi, and surveyed the diversity of siderophore production in V. campbellii and V. harveyi strains. The amphi-enterobactin gene cluster of BAA-1116 harbors a gene, named fapA, that is a homologue of genes encoding Fe(III)-siderophore-specific outer membrane receptors. Another strain, V. campbellii HY01, a strain pathogenic to shrimp, also carries this cluster including fapA. Our siderophore bioassay results using HY01-derived indicator strains show that the FapA protein localized in the outer membrane fraction of V. campbellii HY01 is essential for the uptake of Fe(III)-amphi-enterobactin as well as exogenous siderophores, including enterobactin from E. coli, but not vanchrobactin from V. anguillarum RV22 while Fe(III)-amphi-enterobactin can be utilized by V. anguillarum. Electrospray ionization mass spectrometry as well as bioassay revealed that various V. campbellii and V. harveyi strains produce a suite of amphi-enterobactins with various fatty acid appendages, including several novel amphi-enterobactins, and these amphi-enterobactins can be taken up by V. campbellii HY01 via FapA, indicating that amphi-enterobactin production is a common phenotype among V. campbellii and V. harveyi, whereas our previous work, confirmed herein, showed that anguibactin is only produced by V. campbellii strains. These results along with the additional finding that a 2,3-dihydroxybenzoic acid biosynthesis gene, aebA, located in the amphi-enterobactin gene cluster, is essential for both anguibactin and amphi-enterobactin biosynthesis, suggest the possibility that amphi-enterobactin is a native siderophore of V. campbellii and V. harveyi, while the anguibactin system has been acquired by V. campbellii during evolution.


Asunto(s)
Proteínas de la Membrana Bacteriana Externa/metabolismo , Enterobactina/metabolismo , Compuestos Férricos/metabolismo , Vibrio/química , Proteínas de la Membrana Bacteriana Externa/química , Enterobactina/biosíntesis , Enterobactina/química , Compuestos Férricos/química , Conformación Molecular , Vibrio/metabolismo
15.
Spectrochim Acta A Mol Biomol Spectrosc ; 198: 264-277, 2018 Jun 05.
Artículo en Inglés | MEDLINE | ID: mdl-29550657

RESUMEN

Emerging and re-emerging epidemic diseases pose an ongoing threat to global health. Currently, Enterobactin and Enterobactin derivatives have gained interest, owing to their potential application in the pharmaceutical field. As it is known [J. Am. Chem. Soc (1979) 101, 20, 6097-6104], Enterobactin (H6EB) is an efficient iron carrier synthesized and secreted by many microbial species. In order to facilitate the elucidation of enterobactin and its analogues, here we propose the creation of a H6EB standard set using Density Functional Theory Infrared (IR) and NMR spectra. We used two exchange-correlation (xc) functionals (PBE including long-range corrections LC-PBE and mPW1), 2 basis sets (QZVP and 6-31G(d)) and 2 grids (fine and ultrafine) for most of the H6EB structures dependent of dihedral angles. The results show a significant difference between the OH and NH bands, while the CO amide and O(CO) IR bands are often found on top of each other. The NMR DFT calculations show a strong dependence on the xc functional, basis set, and grid used for the H6EB structure. Calculated 1H and 13C NMR spectra enable the effect of the solvent to be understood in the context of the experimental measurements. The good agreement between the experimental and the calculated spectra using LC-PBE/QZVP and ultrafine grid suggest the possibility of the systems reported here to be considered as a standard set. The dependence of electrostatic potential and frontier orbitals with the catecholamide dihedral angles of H6EB is described. The matrix-assisted laser desorption/ionization time of the flight mass spectrometry (MALDI-TOF MS) of H6EB is also reported of manner to enrich the knowledge about its reactivity.


Asunto(s)
Enterobactina/química , Espectroscopía de Resonancia Magnética , Espectrofotometría Infrarroja , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción
16.
J Am Chem Soc ; 140(15): 5193-5201, 2018 04 18.
Artículo en Inglés | MEDLINE | ID: mdl-29578687

RESUMEN

Enteric Gram-negative bacteria, including Escherichia coli, biosynthesize and deploy the triscatecholate siderophore enterobactin (Ent) in the vertebrate host to acquire iron, an essential nutrient. We report that Ent-Cipro, a synthetic siderophore-antibiotic conjugate based on the native Ent platform that harbors an alkyl linker at one of the catechols with a ciprofloxacin cargo attached, affords targeted antibacterial activity against E. coli strains that express the pathogen-associated iroA gene cluster. Attachment of the siderophore to ciprofloxacin, a DNA gyrase inhibitor and broad-spectrum antibiotic that is used to treat infections caused by E. coli, generates an inactive prodrug and guides the antibiotic into the cytoplasm of bacteria that express the Ent uptake machinery (FepABCDG). Intracellular hydrolysis of the siderophore restores the activity of the antibiotic. Remarkably, Fes, the cytoplasmic Ent hydrolase expressed by all E. coli, does not contribute to Ent-Cipro activation. Instead, this processing step requires IroD, a cytoplasmic hydrolase that is expressed only by E. coli that harbor the iroA gene cluster and are predominantly pathogenic. In the uropathogenic E. coli UTI89 and CFT073, Ent-Cipro provides antibacterial activity comparable to unmodified ciprofloxacin. This work highlights the potential of leveraging and targeting pathogen-associated microbial enzymes in narrow-spectrum antibacterial approaches. Moreover, because E. coli include harmless gut commensals as well as resident microbes that can contribute to disease, Ent-Cipro may provide a valuable chemical tool for strain-selective modulation of the microbiota.


Asunto(s)
Antibacterianos/farmacología , Ciprofloxacina/farmacología , Enterobactina/farmacología , Escherichia coli/efectos de los fármacos , Esterasas/metabolismo , Antibacterianos/química , Antibacterianos/metabolismo , Biocatálisis , Ciprofloxacina/química , Ciprofloxacina/metabolismo , Relación Dosis-Respuesta a Droga , Enterobactina/química , Enterobactina/metabolismo , Hidrólisis , Pruebas de Sensibilidad Microbiana , Conformación Molecular , Relación Estructura-Actividad
17.
Nat Chem Biol ; 14(3): 253-255, 2018 03.
Artículo en Inglés | MEDLINE | ID: mdl-29334382

RESUMEN

Producing novel enzymes that are catalytically active in vitro and biologically functional in vivo is a key goal of synthetic biology. Here we describe Syn-F4, the first de novo protein that meets both criteria. Purified Syn-F4 hydrolyzes the siderophore ferric enterobactin, and expression of Syn-F4 allows an inviable strain of Escherichia coli to grow in iron-limited medium. These findings demonstrate that entirely new sequences can provide life-sustaining enzymatic functions in living organisms.


Asunto(s)
Medios de Cultivo/química , Enterobactina/química , Escherichia coli/enzimología , Hierro/química , Biología Sintética/métodos , Catálisis , Biología Computacional , Dimerización , Proteínas de Escherichia coli/química , Hidrólisis , Cinética , Mutagénesis , Mutación , Fenotipo , Pliegue de Proteína , Sideróforos/química
18.
J Am Chem Soc ; 139(42): 15245-15250, 2017 10 25.
Artículo en Inglés | MEDLINE | ID: mdl-28956921

RESUMEN

Enterobactin is a secondary metabolite produced by Enterobacteriaceae for acquiring iron, an essential metal nutrient. The biosynthesis and utilization of enterobactin permits many Gram-negative bacteria to thrive in environments where low soluble iron concentrations would otherwise preclude survival. Despite extensive work carried out on this celebrated molecule since its discovery over 40 years ago, the ferric enterobactin complex has eluded crystallographic structural characterization. We report the successful growth of single crystals containing ferric enterobactin using racemic crystallization, a method that involves cocrystallization of a chiral molecule with its mirror image. The structures of ferric enterobactin and ferric enantioenterobactin obtained in this work provide a definitive assignment of the stereochemistry at the metal center and reveal secondary coordination sphere interactions. The structures were employed in computational investigations of the interactions of these complexes with two enterobactin-binding proteins, which illuminate the influence of metal-centered chirality on these interactions. This work highlights the utility of small-molecule racemic crystallography for obtaining elusive structures of coordination complexes.


Asunto(s)
Enterobactina/análogos & derivados , Enterobactina/química , Compuestos Férricos/química , Cristalización , Cristalografía , Estructura Molecular , Estereoisomerismo
19.
Metallomics ; 9(7): 824-839, 2017 07 19.
Artículo en Inglés | MEDLINE | ID: mdl-28594012

RESUMEN

Bacteria often produce siderophores to facilitate iron uptake. One of the most studied siderophores is enterobactin, the macrolactone trimer of 2,3-dihydroxybenzoyl-l-serine, produced by E. coli and many other enteric bacteria. Other siderophores are variants of enterobactin, with structural modifications including expansion of the tri-serine core to a tetra-serine macrolactone, substitution of l-serine with l-threonine, insertion of amino acids (i.e., Gly, l-Ala, d-Lys, d- and l-Arg, l-Orn), catechol glucosylation, and linearization of the tri-serine macrolactone core. In this review we summarize the current understanding of the biosyntheses of these enterobactin variants, placing them in contrast with the well-established biosynthesis of enterobactin.


Asunto(s)
Catecoles/metabolismo , Lactonas/metabolismo , Serina/metabolismo , Sideróforos/metabolismo , Treonina/metabolismo , Secuencia de Aminoácidos , Catecoles/química , Enterobactina/química , Enterobactina/metabolismo , Sideróforos/química
20.
J Immunol ; 198(11): 4293-4303, 2017 06 01.
Artículo en Inglés | MEDLINE | ID: mdl-28432145

RESUMEN

Neutrophils are the primary immune cells that respond to inflammation and combat microbial transgression. To thrive, the bacteria residing in their mammalian host have to withstand the antibactericidal responses of neutrophils. We report that enterobactin (Ent), a catecholate siderophore expressed by Escherichia coli, inhibited PMA-induced generation of reactive oxygen species (ROS) and neutrophil extracellular traps (NETs) in mouse and human neutrophils. Ent also impaired the degranulation of primary granules and inhibited phagocytosis and bactericidal activity of neutrophils, without affecting their migration and chemotaxis. Molecular analysis revealed that Ent can chelate intracellular labile iron that is required for neutrophil oxidative responses. Other siderophores (pyoverdine, ferrichrome, deferoxamine) likewise inhibited ROS and NETs in neutrophils, thus indicating that the chelation of iron may largely explain their inhibitory effects. To counter iron theft by Ent, neutrophils rely on the siderophore-binding protein lipocalin 2 (Lcn2) in a "tug-of-war" for iron. The inhibition of neutrophil ROS and NETs by Ent was augmented in Lcn2-deficient neutrophils compared with wild-type neutrophils but was rescued by the exogenous addition of recombinant Lcn2. Taken together, our findings illustrate the novel concept that microbial siderophore's iron-scavenging property may serve as an antiradical defense system that neutralizes the immune functions of neutrophils.


Asunto(s)
Enterobactina/metabolismo , Enterobactina/farmacología , Trampas Extracelulares/inmunología , Neutrófilos/efectos de los fármacos , Neutrófilos/fisiología , Sideróforos/farmacología , Animales , Quimiotaxis/efectos de los fármacos , Enterobactina/química , Escherichia coli/química , Trampas Extracelulares/efectos de los fármacos , Humanos , Hierro/metabolismo , Lipocalina 2/genética , Lipocalina 2/metabolismo , Lipocalina 2/farmacología , Ratones , Neutrófilos/inmunología , Neutrófilos/patología , Fagocitosis/efectos de los fármacos , Sideróforos/metabolismo , Acetato de Tetradecanoilforbol/farmacología
SELECCIÓN DE REFERENCIAS
DETALLE DE LA BÚSQUEDA