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1.
Ying Yong Sheng Tai Xue Bao ; 35(4): 1064-1072, 2024 Apr 18.
Artículo en Chino | MEDLINE | ID: mdl-38884241

RESUMEN

Transpiration is a significant part of water cycle in forest ecosystems, influenced by meteorological factors and potentially constrained by soil moisture. We used Granier-type thermal dissipation probes to monitor xylem sap flow dynamics of three tree species (Quercus liaotungensis, Platycladus orientalis, and Robinia pseudoacacia) in a semi-arid loess hilly region, and to continuously monitor the key meteorological factors and soil water content (SWC). We established the SWC thresholds delineating soil moisture-limited and -unlimited sap flow responses to transpiration drivers. The results showed that mean sap flux density (Js) of Q. liaotungensis and R. pseudoacacia was significantly higher during period with higher soil moisture compared to lower soil moisture, while the difference in Js for P. orientalis between the two periods was not significant. We used an exponential saturation function to fit the relationship between the Js of each tree species and the integrated transpiration variable (VT) which reflected solar radiation and vapor pressure deficit. The difference in the fitting curve parameters indicated that there were distinct response patterns between Js and VT under different soil moisture conditions. There was a threshold in soil moisture limitation on sap flow for each species, which was identified as 0.129 m3·m-3 for Q. liaotungensis, 0.116 m3·m-3 for P. orientalis, and 0.108 m3·m-3 for R. pseudoacacia. Below the thresholds, Js was limited by soil moisture. Above these points, the normalized sensitivity index (NSI) for Q. liaotungensis and P. orientalis reached saturation, while that of R. pseudoacacia did not reach saturation but exhibited a significant reduction in moisture limitation. Among the three species, P. orientalis was the most capable of overcoming soil moisture constraints.


Asunto(s)
Transpiración de Plantas , Suelo , Árboles , Agua , Suelo/química , Agua/metabolismo , Agua/análisis , Árboles/crecimiento & desarrollo , Árboles/fisiología , Árboles/metabolismo , China , Quercus/fisiología , Quercus/crecimiento & desarrollo , Quercus/metabolismo , Ecosistema , Robinia/fisiología , Robinia/crecimiento & desarrollo , Robinia/metabolismo , Bosques , Xilema/fisiología , Xilema/metabolismo , Exudados de Plantas/metabolismo
2.
Nat Commun ; 15(1): 5125, 2024 Jun 15.
Artículo en Inglés | MEDLINE | ID: mdl-38879580

RESUMEN

The plant health status is determined by the interplay of plant-pathogen-microbiota in the rhizosphere. Here, we investigate this tripartite system focusing on the pathogen Fusarium oxysporum f. sp. lycopersici (FOL) and tomato plants as a model system. First, we explore differences in tomato genotype resistance to FOL potentially associated with the differential recruitment of plant-protective rhizosphere taxa. Second, we show the production of fusaric acid by FOL to trigger systemic changes in the rhizosphere microbiota. Specifically, we show this molecule to have opposite effects on the recruitment of rhizosphere disease-suppressive taxa in the resistant and susceptible genotypes. Last, we elucidate that FOL and fusaric acid induce changes in the tomato root exudation with direct effects on the recruitment of specific disease-suppressive taxa. Our study unravels a mechanism mediating plant rhizosphere assembly and disease suppression by integrating plant physiological responses to microbial-mediated mechanisms in the rhizosphere.


Asunto(s)
Ácido Fusárico , Fusarium , Microbiota , Enfermedades de las Plantas , Exudados de Plantas , Raíces de Plantas , Rizosfera , Solanum lycopersicum , Ácido Fusárico/metabolismo , Fusarium/patogenicidad , Raíces de Plantas/microbiología , Raíces de Plantas/metabolismo , Solanum lycopersicum/microbiología , Solanum lycopersicum/metabolismo , Enfermedades de las Plantas/microbiología , Exudados de Plantas/metabolismo , Microbiología del Suelo , Resistencia a la Enfermedad , Genotipo
3.
Appl Environ Microbiol ; 90(6): e0058924, 2024 Jun 18.
Artículo en Inglés | MEDLINE | ID: mdl-38814059

RESUMEN

Dormant microsclerotia play a vital role in the survival and spread of Verticillium longisporum, as they can stay viable in the soil and maintain their infectivity for many years. In our previous work, we revealed that soil bacterial volatiles are a key inhibitory factor causing microsclerotia dormancy in the soil. In this study, we further demonstrate that root exudates collected from both host and non-host plants can effectively rescue microsclerotia from bacterial suppression and initiate germination. To identify the specific compounds in root exudates responsible for microsclerotia germination, we fractionated the collected root exudates into polar and non-polar compounds. Subsequently, we conducted comprehensive bioassays with each fraction on germination-suppressed microsclerotia. The result revealed a pivotal role of primary metabolites in root exudates, particularly glutamic acid, in triggering microsclerotia germination and overcoming bacterial inhibition. Moreover, our studies revealed a decrease in inhibitory bacterial volatile fatty acids when bacteria were cultured in the presence of root exudates or glutamic acid. This suggests a potential mechanism, by which root exudates set-off bacterial suppression on microsclerotia. Here, we reveal for the first time that plant root exudates, instead of directly inducing the germination of microsclerotia, enact a set-off effect by counteracting the suppressive impact of soil bacteria on the microsclerotia germination process. This nuanced interaction advances our understanding of the multifaceted dynamics governing microsclerotia dormancy and germination in the soil environment. IMPORTANCE: Our research provides first-time insights into the crucial interaction between plant root exudates and soil bacteria in regulating the germination of Verticillium longisporum microsclerotia, a significant structure in the survival and proliferation of this soil-borne pathogen. We describe so far unknown mechanisms, which are key to understand how root infections on oilseed rape can occur. By pinpointing primary metabolites in root exudates as key factors in overcoming bacteria-induced dormancy and promote microsclerotia germination, our study highlights the potential for exploiting plant - as well as soil microbe-derived - compounds to control V. longisporum. This work underscores the importance of elucidating the nuanced interactions within the soil ecosystem to devise innovative strategies for managing root infective plant diseases, thereby contributing to the resilience and health of cropping systems.


Asunto(s)
Exudados de Plantas , Raíces de Plantas , Microbiología del Suelo , Verticillium , Raíces de Plantas/microbiología , Raíces de Plantas/crecimiento & desarrollo , Verticillium/crecimiento & desarrollo , Verticillium/fisiología , Exudados de Plantas/metabolismo , Enfermedades de las Plantas/microbiología , Enfermedades de las Plantas/prevención & control , Bacterias/metabolismo , Bacterias/clasificación
4.
Zhongguo Zhong Yao Za Zhi ; 49(8): 2128-2137, 2024 Apr.
Artículo en Chino | MEDLINE | ID: mdl-38812228

RESUMEN

The rhizosphere is an important place for material exchange between medicinal plants and soil. Root exudates are the medium of material and signal exchange between plants and soil and are the key factors in the regulation of rhizosphere microecology. Rhizosphere microorganisms are an important part of the rhizosphere microecology of medicinal plants, and the interaction between root exudates and rhizosphere microorganisms has an important influence on the growth and quality formation of medicinal plants. Rational utilization of the interaction between root exudates and rhizosphere microorganisms of medicinal plants is one of the important ways to ensure the healthy growth of medicinal plants and promote the development of ecological planting of Chinese medicinal materials. In the paper, the research status of root exudates and rhizosphere microorganisms of medicinal plants in recent years was summarized. The interaction mechanism between root exudates and rhizosphere microorganisms of medicinal plants, as well as the influence of rhizosphere microorganisms on the growth of medicinal plants, were analyzed. In addition, the advantages and promoting effects of intercropping ecological planting mode on rhizosphere microecology of medicinal plants and quality improvement of Chinese medicinal materials were explained, providing a good basis for the study of the interaction among medicinal plants, microorganisms, and soil. Furthermore, it could produce important theoretical and practical significance for the ecological planting and sustainable utilization of medicinal plants.


Asunto(s)
Raíces de Plantas , Plantas Medicinales , Rizosfera , Microbiología del Suelo , Plantas Medicinales/metabolismo , Plantas Medicinales/microbiología , Plantas Medicinales/química , Plantas Medicinales/crecimiento & desarrollo , Raíces de Plantas/microbiología , Raíces de Plantas/metabolismo , Raíces de Plantas/crecimiento & desarrollo , Bacterias/metabolismo , Bacterias/clasificación , Exudados de Plantas/metabolismo , Exudados de Plantas/química
5.
Sci Rep ; 14(1): 11274, 2024 05 17.
Artículo en Inglés | MEDLINE | ID: mdl-38760388

RESUMEN

Soil sickness a severe problem in tobacco production, leading to soil-borne diseases and reduce in tobacco yield. This occurs as a result of the interaction between root exudates and rhizosphere microorganisms, which is however, little studied until now. By combining the field investigation and pot experiment, we found the output yield consistently decreased during the first 10 years of continuous cropping in a tobacco field, but increased at the 15th year (15Y). The root exudate and rhizosphere bacterial community was further analyzed to reveal the underlying mechanism of the suppressive soil formation. Root exudate of 15Y tobacco enriched in amino acids and derivatives, while depleted in the typical autotoxins including phenolic acids and alkaloids. This was correlated to the low microbial diversity in 15Y, but also the changes in community composition and topological properties of the co-occurrence network. Especially, the reduced autotoxins were associated with low Actinobacteria abundance, low network complexity and high network modularity, which significantly correlated with the recovered output yield in 15Y. This study revealed the coevolution of rhizosphere microbiota and root exudate as the soil domesticated by continuous cropping of tobacco, and indicated a potential role of the autotoxins and theirs effect on the microbial community in the formation of suppressive soil.


Asunto(s)
Microbiota , Nicotiana , Raíces de Plantas , Rizosfera , Microbiología del Suelo , Nicotiana/microbiología , Nicotiana/crecimiento & desarrollo , Raíces de Plantas/microbiología , Raíces de Plantas/crecimiento & desarrollo , Exudados de Plantas/metabolismo , Suelo/química
6.
BMC Plant Biol ; 24(1): 340, 2024 Apr 26.
Artículo en Inglés | MEDLINE | ID: mdl-38671402

RESUMEN

Astragalus mongholicus is a medicinal plant that is known to decrease in quality in response to continuous cropping. However, the differences in the root-associated microbiome and root exudates in the rhizosphere soil that may lead to these decreases are barely under studies. We investigated the plant biomass production, root-associated microbiota, and root exudates of A. mongholicus grown in two different fields: virgin soil (Field I) and in a long-term continuous cropping field (Field II). Virgin soil is soil that has never been cultivated for A. mongholicus. Plant physiological measurements showed reduced fresh and dry weight of A. mongholicus under continuous cropping conditions (i.e. Field II). High-throughput sequencing of the fungal and bacterial communities revealed differences in fungal diversity between samples from the two fields, including enrichment of potentially pathogenic fungi in the roots of A. mongholicus grown in Field II. Metabolomic analysis yielded 20 compounds in A. mongholicus root exudates that differed in relative abundance between rhizosphere samples from the two fields. Four of these metabolites (2-aminophenol, quinic acid, tartaric acid, and maleamate) inhibited the growth of A. mongholicus, the soil-borne pathogen Fusarium oxysporum, or both. This comprehensive analysis enhances our understanding of the A. mongholicus microbiome, root exudates, and interactions between the two in response to continuous cropping. These results offer new information for future design of effective, economical approaches to achieving food security.


Asunto(s)
Microbiota , Raíces de Plantas , Rizosfera , Microbiología del Suelo , Raíces de Plantas/microbiología , Planta del Astrágalo/microbiología , Exudados de Plantas/metabolismo , Hongos/genética , Hongos/fisiología , Producción de Cultivos/métodos , Bacterias/genética , Bacterias/metabolismo
7.
PLoS Biol ; 22(4): e3002232, 2024 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-38662644

RESUMEN

Plant-associated microbes play vital roles in promoting plant growth and health, with plants secreting root exudates into the rhizosphere to attract beneficial microbes. Exudate composition defines the nature of microbial recruitment, with different plant species attracting distinct microbiota to enable optimal adaptation to the soil environment. To more closely examine the relationship between plant genotype and microbial recruitment, we analysed the rhizosphere microbiomes of landrace (Chevallier) and modern (NFC Tipple) barley (Hordeum vulgare) cultivars. Distinct differences were observed between the plant-associated microbiomes of the 2 cultivars, with the plant-growth promoting rhizobacterial genus Pseudomonas substantially more abundant in the Tipple rhizosphere. Striking differences were also observed between the phenotypes of recruited Pseudomonas populations, alongside distinct genotypic clustering by cultivar. Cultivar-driven Pseudomonas selection was driven by root exudate composition, with the greater abundance of hexose sugars secreted from Tipple roots attracting microbes better adapted to growth on these metabolites and vice versa. Cultivar-driven selection also operates at the molecular level, with both gene expression and the abundance of ecologically relevant loci differing between Tipple and Chevallier Pseudomonas isolates. Finally, cultivar-driven selection is important for plant health, with both cultivars showing a distinct preference for microbes selected by their genetic siblings in rhizosphere transplantation assays.


Asunto(s)
Genotipo , Hordeum , Microbiota , Raíces de Plantas , Pseudomonas , Rizosfera , Hordeum/microbiología , Hordeum/genética , Hordeum/metabolismo , Raíces de Plantas/microbiología , Raíces de Plantas/metabolismo , Microbiota/fisiología , Microbiota/genética , Pseudomonas/genética , Pseudomonas/metabolismo , Pseudomonas/fisiología , Microbiología del Suelo , Exudados de Plantas/metabolismo
8.
Chemosphere ; 356: 141896, 2024 May.
Artículo en Inglés | MEDLINE | ID: mdl-38579949

RESUMEN

Complex rhizoremediation is the main mechanism of phytoremediation in organic-contaminated soil. Low molecular weight organic acids (LMWOAs) in root exudates have been shown to increase the bioavailability of contaminants and are essential for promoting the dissipation of contaminants. The effects of root exudates on the dissipation of organophosphate esters (OPEs) in soil are unclear. Consequently, we studied the combined effects of root exudates, soil enzymes and microorganisms on OPEs (tri (1-chloro-2-propyl) phosphate (TCPP) and triphenyl phosphate (TPP)) dissipation through pot experiments. Oxalic acid (OA) was confirmed to be the main component of LMWOAs in root exudates of ryegrass. The existence of OA increased the dissipation rate of OPEs by 6.04%-25.50%. Catalase and dehydrogenase activities were firstly activated and then inhibited in soil. While, urease activity was activated and alkaline phosphatase activity was inhibited during the exposure period. More bacteria enrichment (e.g., Sphingomonas, Pseudomonas, Flavisolibacter, Pontibacter, Methylophilus and Massilia) improved the biodegradation of OPEs. In addition, the transformation paths of OPEs hydrolysis and methylation under the action of root exudates were observed. This study provided theoretical insights into reducing the pollution risk of OPEs in the soil.


Asunto(s)
Biodegradación Ambiental , Ésteres , Lolium , Ácido Oxálico , Raíces de Plantas , Microbiología del Suelo , Contaminantes del Suelo , Suelo , Ácido Oxálico/metabolismo , Contaminantes del Suelo/metabolismo , Lolium/metabolismo , Raíces de Plantas/metabolismo , Suelo/química , Ésteres/metabolismo , Organofosfatos/metabolismo , Oxidorreductasas/metabolismo , Catalasa/metabolismo , Bacterias/metabolismo , Exudados de Plantas/metabolismo , Exudados de Plantas/química
9.
Nat Commun ; 15(1): 3436, 2024 Apr 23.
Artículo en Inglés | MEDLINE | ID: mdl-38653767

RESUMEN

Symbiosis with soil-dwelling bacteria that fix atmospheric nitrogen allows legume plants to grow in nitrogen-depleted soil. Symbiosis impacts the assembly of root microbiota, but it is unknown how the interaction between the legume host and rhizobia impacts the remaining microbiota and whether it depends on nitrogen nutrition. Here, we use plant and bacterial mutants to address the role of Nod factor signaling on Lotus japonicus root microbiota assembly. We find that Nod factors are produced by symbionts to activate Nod factor signaling in the host and that this modulates the root exudate profile and the assembly of a symbiotic root microbiota. Lotus plants with different symbiotic abilities, grown in unfertilized or nitrate-supplemented soils, display three nitrogen-dependent nutritional states: starved, symbiotic, or inorganic. We find that root and rhizosphere microbiomes associated with these states differ in composition and connectivity, demonstrating that symbiosis and inorganic nitrogen impact the legume root microbiota differently. Finally, we demonstrate that selected bacterial genera characterizing state-dependent microbiomes have a high level of accurate prediction.


Asunto(s)
Lotus , Microbiota , Nitrógeno , Raíces de Plantas , Transducción de Señal , Simbiosis , Lotus/microbiología , Lotus/metabolismo , Nitrógeno/metabolismo , Raíces de Plantas/microbiología , Raíces de Plantas/metabolismo , Microbiota/fisiología , Rizosfera , Proteínas Bacterianas/metabolismo , Proteínas Bacterianas/genética , Microbiología del Suelo , Fijación del Nitrógeno , Exudados de Plantas/metabolismo
10.
Plant Physiol Biochem ; 210: 108573, 2024 May.
Artículo en Inglés | MEDLINE | ID: mdl-38569423

RESUMEN

Riboflavins are secreted under iron deficiency as a part of the iron acquisition Strategy I, mainly when the external pH is acidic. In plants growing under Fe-deficiency and alkaline conditions, riboflavins have been reported to accumulate inside the roots, with very low or negligible secretion. However, the fact that riboflavins may undergo hydrolysis under alkaline conditions has been so far disregarded. In this paper, we report the presence of riboflavin derivatives and products of their alkaline hydrolysis (lumichrome, lumiflavin and carboxymethylflavin) in nutrient solutions of Cucumis sativus plants grown under different iron regimes (soluble Fe-EDDHA in the nutrient solution, total absence of iron in the nutrient solution, or two different doses of FeSO4 supplied as a foliar spray), either cultivated in slightly acidic (pH 6) or alkaline (pH 8.8, 10 mM bicarbonate) nutrient solutions. The results show that root synthesis and exudation of riboflavins is controlled by shoot iron status, and that exuded riboflavins undergo hydrolysis, especially at alkaline pH, with lumichrome being the main product of hydrolysis.


Asunto(s)
Raíces de Plantas , Raíces de Plantas/metabolismo , Raíces de Plantas/efectos de los fármacos , Hidrólisis , Cucumis sativus/metabolismo , Cucumis sativus/efectos de los fármacos , Deficiencias de Hierro , Riboflavina/metabolismo , Concentración de Iones de Hidrógeno , Estrés Fisiológico/efectos de los fármacos , Hierro/metabolismo , Exudados de Plantas/metabolismo
11.
Can J Microbiol ; 70(5): 150-162, 2024 May 01.
Artículo en Inglés | MEDLINE | ID: mdl-38427979

RESUMEN

This study characterizes seedling exudates of peas, tomatoes, and cucumbers at the level of chemical composition and functionality. A plant experiment confirmed that Rhizobium leguminosarum bv. viciae 3841 enhanced growth of pea shoots, while Azospirillum brasilense Sp7 supported growth of pea, tomato, and cucumber roots. Chemical analysis of exudates after 1 day of seedling incubation in water yielded differences between the exudates of the three plants. Most remarkably, cucumber seedling exudate did not contain detectable sugars. All exudates contained amino acids, nucleobases/nucleosides, and organic acids, among other compounds. Cucumber seedling exudate contained reduced glutathione. Migration on semi solid agar plates containing individual exudate compounds as putative chemoattractants revealed that R. leguminosarum bv. viciae was more selective than A. brasilense, which migrated towards any of the compounds tested. Migration on semi solid agar plates containing 1:1 dilutions of seedling exudate was observed for each of the combinations of bacteria and exudates tested. Likewise, R. leguminosarum bv. viciae and A. brasilense grew on each of the three seedling exudates, though at varying growth rates. We conclude that the seedling exudates of peas, tomatoes, and cucumbers contain everything that is needed for their symbiotic bacteria to migrate and grow on.


Asunto(s)
Azospirillum brasilense , Cucumis sativus , Pisum sativum , Rhizobium leguminosarum , Plantones , Solanum lycopersicum , Solanum lycopersicum/microbiología , Solanum lycopersicum/crecimiento & desarrollo , Cucumis sativus/microbiología , Cucumis sativus/crecimiento & desarrollo , Plantones/crecimiento & desarrollo , Plantones/microbiología , Rhizobium leguminosarum/crecimiento & desarrollo , Rhizobium leguminosarum/metabolismo , Azospirillum brasilense/crecimiento & desarrollo , Azospirillum brasilense/metabolismo , Pisum sativum/microbiología , Pisum sativum/crecimiento & desarrollo , Raíces de Plantas/microbiología , Raíces de Plantas/crecimiento & desarrollo , Quimiotaxis , Exudados de Plantas/química , Exudados de Plantas/metabolismo
12.
Sci Rep ; 14(1): 2359, 2024 01 29.
Artículo en Inglés | MEDLINE | ID: mdl-38286879

RESUMEN

Biotransformation of organic pollutants is crucial for the dissipation of environmental pollutants. While the roles of microorganisms have been extensively studied, the significant contribution of various root exudates are still not very well understood. Through plant growth experiment, coupled with gas and liquid chromatography-mass spectrometry methods, this study examined the effect of the presence of M. sativa on microbial-associated biochemical transformation of petroleum hydrocarbons. The results of this study revealed that the concentration of exudates within the soil matrix is a function of proximity to root surfaces. Similarly, biodegradation was found to correlate with distance from roots, ranging from ≥ 90% within the rhizosphere to < 50% in bulk soil and unplanted control soil. Most importantly, for the first time in a study of an entire petroleum distillate, this study revealed a statistically significant negative correlation between root exudate concentration and residual total petroleum hydrocarbons. While not all the compounds that may influence biodegradation are derived from roots, the results of this study show that the presence of plant can significantly influence biodegradation of hydrocarbon pollutants through such root exudation as organic acids, amino acids, soluble sugars and terpenoids. Therefore, root exudates, including secondary metabolites, offer great prospects for biotechnological applications in the remediation of organic pollutants, including recalcitrant ones.


Asunto(s)
Contaminantes Ambientales , Petróleo , Contaminantes del Suelo , Contaminantes Ambientales/metabolismo , Contaminantes del Suelo/metabolismo , Rizosfera , Biodegradación Ambiental , Suelo , Biotransformación , Exudados y Transudados/metabolismo , Hidrocarburos/metabolismo , Petróleo/metabolismo , Raíces de Plantas/metabolismo , Microbiología del Suelo , Exudados de Plantas/metabolismo
13.
Microbiol Res ; 279: 127564, 2024 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-38071833

RESUMEN

A wide range of abiotic and biotic stresses adversely affect plant's growth and production. Under stress, one of the main responses of plants is the modulation of exudates excreted in the rhizosphere, which consequently leads to alterations in the resident microbiota. Thus, the exudates discharged into the rhizospheric environment play a preponderant role in the association and formation of plant-microbe interactions. In this review, we aimed to provide a synthesis of the latest and most pertinent literature on the diverse biochemical and structural compositions of plant root exudates. Also, this work investigates into their multifaceted role in microbial nutrition and intricate signaling processes within the rhizosphere, which includes quorum-sensing molecules. Specifically, it explores the contributions of low molecular weight compounds, such as carbohydrates, phenolics, organic acids, amino acids, and secondary metabolites, as well as the significance of high molecular weight compounds, including proteins and polysaccharides. It also discusses the state-of-the-art omics strategies that unveil the vital role of root exudates in plant-microbiome interactions, including defense against pathogens like nematodes and fungi. We propose multiple challenges and perspectives, including exploiting plant root exudates for host-mediated microbiome engineering. In this discourse, root exudates and their derived interactions with the rhizospheric microbiota should receive greater attention due to their positive influence on plant health and stress mitigation.


Asunto(s)
Microbiota , Raíces de Plantas , Raíces de Plantas/microbiología , Microbiota/fisiología , Exudados y Transudados/metabolismo , Exudados de Plantas/metabolismo , Percepción de Quorum , Plantas/microbiología , Rizosfera , Microbiología del Suelo
14.
New Phytol ; 239(6): 2307-2319, 2023 09.
Artículo en Inglés | MEDLINE | ID: mdl-37357338

RESUMEN

Rhizomicrobiome plays important roles in plant growth and health, contributing to the sustainable development of agriculture. Plants recruit and assemble the rhizomicrobiome to satisfy their functional requirements, which is widely recognized as the 'cry for help' theory, but the intrinsic mechanisms are still limited. In this study, we revealed a novel mechanism by which plants reprogram the functional expression of inhabited rhizobacteria, in addition to the de novo recruitment of soil microbes, to satisfy different functional requirements as plants grow. This might be an efficient and low-cost strategy and a substantial extension to the rhizomicrobiome recruitment theory. We found that the plant regulated the sequential expression of genes related to biocontrol and plant growth promotion in two well-studied rhizobacteria Bacillus velezensis SQR9 and Pseudomonas protegens CHA0 through root exudate succession across the plant developmental stages. Sixteen key chemicals in root exudates were identified to significantly regulate the rhizobacterial functional gene expression by high-throughput qPCR. This study not only deepens our understanding of the interaction between the plant-rhizosphere microbiome, but also provides a novel strategy to regulate and balance the different functional expression of the rhizomicrobiome to improve plant health and growth.


Asunto(s)
Desarrollo de la Planta , Raíces de Plantas , Raíces de Plantas/metabolismo , Exudados y Transudados , Plantas/microbiología , Suelo , Rizosfera , Microbiología del Suelo , Exudados de Plantas/metabolismo
15.
Nat Commun ; 14(1): 1649, 2023 03 24.
Artículo en Inglés | MEDLINE | ID: mdl-36964135

RESUMEN

Root exudates are plant-derived, exported metabolites likely shaping root-associated microbiomes by acting as nutrients and signals. However, root exudation dynamics are unclear and thus also, if changes in exudation are reflected in changes in microbiome structure. Here, we assess commonalities and differences between exudates of different plant species, diurnal exudation dynamics, as well as the accompanying methodological aspects of exudate sampling. We find that exudates should be collected for hours rather than days as many metabolite abundances saturate over time. Plant growth in sterile, nonsterile, or sugar-supplemented environments significantly alters exudate profiles. A comparison of Arabidopsis thaliana, Brachypodium distachyon, and Medicago truncatula shoot, root, and root exudate metabolite profiles reveals clear differences between these species, but also a core metabolome for tissues and exudates. Exudate profiles also exhibit a diurnal signature. These findings add to the methodological and conceptual groundwork for future exudate studies to improve understanding of plant-microbe interactions.


Asunto(s)
Arabidopsis , Microbiota , Raíces de Plantas/metabolismo , Exudados de Plantas/metabolismo , Metaboloma , Arabidopsis/genética , Arabidopsis/metabolismo
16.
Glob Chang Biol ; 29(12): 3476-3488, 2023 06.
Artículo en Inglés | MEDLINE | ID: mdl-36931867

RESUMEN

Root exudates are an important pathway for plant-microbial interactions and are highly sensitive to climate change. However, how extreme drought affects root exudates and the main components, as well as species-specific differences in response magnitude and direction, are poorly understood. In this study, root exudation rates of total carbon (C) and its components (e.g., sugar, organic acid, and amino acid) were measured under the control and extreme drought treatments (i.e., 70% throughfall reduction) by in situ collection of four tree species with different growth rates in a subtropical forest. We also quantified soil properties, root morphological traits, and mycorrhizal infection rates to examine the driving factors underlying variations in root exudation. Our results showed that extreme drought significantly decreased root exudation rates of total C, sugar, and amino acid by 17.8%, 30.8%, and 35.0%, respectively, but increased root exudation rate of organic acid by 38.6%, which were largely associated with drought-induced changes in tree growth rates, root morphological traits, and mycorrhizal infection rates. Specifically, trees with relatively high growth rates were more responsive to drought for root exudation rates compared with those with relatively low growth rates, which were closely related to root morphological traits and mycorrhizal infection rates. These findings highlight the importance of plant growth strategy in mediating drought-induced changes in root exudation rates. The coordinations among root exudation rates, root morphological traits, and mycorrhizal symbioses in response to drought could be incorporated into land surface models to improve the prediction of climate change impacts on rhizosphere C dynamics in forest ecosystems.


Asunto(s)
Ecosistema , Micorrizas , Raíces de Plantas/metabolismo , Sequías , Bosques , Micorrizas/metabolismo , Árboles , Exudados y Transudados/metabolismo , Compuestos Orgánicos/análisis , Aminoácidos/análisis , Aminoácidos/metabolismo , Suelo/química , Azúcares/análisis , Azúcares/metabolismo , Exudados de Plantas/análisis , Exudados de Plantas/metabolismo
17.
Int J Mol Sci ; 23(23)2022 Dec 03.
Artículo en Inglés | MEDLINE | ID: mdl-36499572

RESUMEN

Diazotrophic bacteria isolated from the rhizosphere of a wild wheat ancestor, grown from its refuge area in the Fertile Crescent, were found to be efficient Plant Growth-Promoting Rhizobacteria (PGPR), upon interaction with an elite wheat cultivar. In nitrogen-starved plants, they increased the amount of nitrogen in the seed crop (per plant) by about twofold. A bacterial growth medium was developed to investigate the effects of bacterial exudates on root development in the elite cultivar, and to analyze the exo-metabolomes and exo-proteomes. Altered root development was observed, with distinct responses depending on the strain, for instance, with respect to root hair development. A first conclusion from these results is that the ability of wheat to establish effective beneficial interactions with PGPRs does not appear to have undergone systematic deep reprogramming during domestication. Exo-metabolome analysis revealed a complex set of secondary metabolites, including nutrient ion chelators, cyclopeptides that could act as phytohormone mimetics, and quorum sensing molecules having inter-kingdom signaling properties. The exo-proteome-comprised strain-specific enzymes, and structural proteins belonging to outer-membrane vesicles, are likely to sequester metabolites in their lumen. Thus, the methodological processes we have developed to collect and analyze bacterial exudates have revealed that PGPRs constitutively exude a highly complex set of metabolites; this is likely to allow numerous mechanisms to simultaneously contribute to plant growth promotion, and thereby to also broaden the spectra of plant genotypes (species and accessions/cultivars) with which beneficial interactions can occur.


Asunto(s)
Microbiología del Suelo , Triticum , Triticum/metabolismo , Raíces de Plantas/metabolismo , Rizosfera , Bacterias , Desarrollo de la Planta , Plantas , Nitrógeno/metabolismo , Exudados de Plantas/metabolismo
18.
J Am Soc Mass Spectrom ; 33(9): 1615-1625, 2022 Sep 07.
Artículo en Inglés | MEDLINE | ID: mdl-35904879

RESUMEN

The plant rhizosphere is a complex and dynamic chemical environment where the exchange of molecular signals between plants, microbes, and fungi drives the development of the entire biological system. Exogenous compounds in the rhizosphere are known to affect plant-microbe organization, interactions between organisms, and ultimately, growth and survivability. The function of exogenous compounds in the rhizosphere is still under much investigation, specifically with respect to their roles in plant growth and development, the assembly of the associated microbial community, and the spatiotemporal distribution of molecular components. A major challenge for spatiotemporal measurements is developing a nondisruptive and nondestructive technique capable of analyzing the exogenous compounds contained within the environment. A methodology using liquid microjunction-surface sampling probe-mass spectrometry (LMJ-SSP-MS) and microfluidic devices with attached microporous membranes was developed for in situ, spatiotemporal measurement of amino acids (AAs) from bacterial biofilms and plant roots. Exuded arginine was measured from a living Pantoea YR343 biofilm, which resulted in a chemical image indicative of biofilm growth within the device. Spot sampling along the roots of Populus trichocarpa with the LMJ-SSP-MS resulted in the detection of 15 AAs. Variation in AA concentrations across the root system was observed, indicating that exudation is not homogeneous and may be linked to local rhizosphere architecture and different biological processes along the root.


Asunto(s)
Aminoácidos , Exudados de Plantas , Aminoácidos/análisis , Bacterias , Biopelículas , Exudados y Transudados/química , Espectrometría de Masas , Exudados de Plantas/análisis , Exudados de Plantas/metabolismo , Raíces de Plantas/química
19.
PLoS One ; 17(1): e0262671, 2022.
Artículo en Inglés | MEDLINE | ID: mdl-35077467

RESUMEN

Alterations in the frequency and intensity of drought events are expected due to climate change and might have consequences for plant metabolism and the development of plant antagonists. In this study, the responses of spring wheat (Triticum aestivum) and one of its major pests, the aphid Sitobion avenae, to different drought regimes were investigated, considering different time points and plant parts. Plants were kept well-watered or subjected to either continuous or pulsed drought. Phloem exudates were collected twice from leaves and once from ears during the growth period and concentrations of amino acids, organic acids and sugars were determined. Population growth and survival of the aphid S. avenae were monitored on these plant parts. Relative concentrations of metabolites in the phloem exudates varied with the time point, the plant part as well as the irrigation regime. Pronounced increases in relative concentrations were found for proline, especially in pulsed drought-stressed plants. Moreover, relative concentrations of sucrose were lower in phloem exudates of ears than in those of leaves. The population growth and survival of aphids were decreased on plants subjected to drought and populations grew twice as large on ears compared to leaves. Our study revealed that changes in irrigation frequency and intensity modulate plant-aphid interactions. These effects may at least partly be mediated by changes in the metabolic composition of the phloem sap.


Asunto(s)
Áfidos , Floema/metabolismo , Exudados de Plantas/metabolismo , Hojas de la Planta/metabolismo , Triticum , Aminoácidos/análisis , Animales , Carbohidratos/análisis , Deshidratación , Herbivoria , Floema/parasitología , Exudados de Plantas/química , Hojas de la Planta/parasitología , Factores de Tiempo , Triticum/metabolismo , Triticum/parasitología
20.
J Sci Food Agric ; 102(2): 540-549, 2022 Jan 30.
Artículo en Inglés | MEDLINE | ID: mdl-34146349

RESUMEN

BACKGROUND: Pasture farming in south-western Australia is challenged by nutrient-poor soils. We assessed the impact of microbial consortium inoculant (MI) and rock mineral fertiliser (MF) on growth, nutrient uptake, root morphology, rhizosphere carboxylate exudation and mycorrhizal colonisation in three pasture grasses - tall fescue (Festuca arundinacea L.), veldt grass (Ehrharta calycina Sm.) and tall wheatgrass (Thinopyrum ponticum L.) grown in low-phosphorus (P) sandy soil in a glasshouse for 30 and 60 days after sowing (DAS). RESULTS: Veldt grass produced the highest specific root length and smallest average root diameter in both growth periods, and had similar shoot weight, root surface area and fine root length (except at 30 DAS) to tall fescue. Compared with the control, MI alone or combined with MF significantly increased shoot and root biomass (except root biomass at 30 DAS), likely due to the significant increases in root surface area and fine root length. Plants supplied with MI + MF had higher shoot N and P contents than those in the MI and the control treatments at 60 DAS. Malate, citrate and trans-aconitate were the major rhizosphere carboxylates exuded at both 30 and 60 DAS. Malate exudation varied among species and treatments in both growth periods, but citrate exudation was consistently higher in the low-P treatments (control and MI) than the MF and MI + MF treatments. CONCLUSION: Microbial consortium inoculant can positively influence pasture production in low-P soil by increasing root surface area and fine root length, whereas exudation of nutrient-mobilising carboxylates (citrate) is dependent more on soil P supply than microbial consortium inoculant. © 2021 Society of Chemical Industry.


Asunto(s)
Inoculantes Agrícolas/crecimiento & desarrollo , Micorrizas/crecimiento & desarrollo , Fósforo/análisis , Exudados de Plantas/metabolismo , Raíces de Plantas/crecimiento & desarrollo , Poaceae/microbiología , Ácidos Carboxílicos/análisis , Ácidos Carboxílicos/metabolismo , Fertilizantes/análisis , Consorcios Microbianos , Fósforo/metabolismo , Exudados de Plantas/análisis , Raíces de Plantas/química , Raíces de Plantas/metabolismo , Raíces de Plantas/microbiología , Poaceae/química , Poaceae/crecimiento & desarrollo , Poaceae/metabolismo , Rizosfera , Suelo/química
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